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revision 1.11.2.11 by edhill, Sat Oct 4 13:56:40 2003 UTC revision 1.211 by jmc, Tue Nov 2 22:45:07 2010 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
56  # the package list.  # the package list.
57  expand_pkg_groups() {  expand_pkg_groups() {
58      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
59      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
60          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
61          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
62          matched=0          matched=0
63          for i in $PACKAGES ; do          for i in $PACKAGES ; do
64              line=`grep $i ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
65              RETVAL=$?              RETVAL=$?
66              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
67                  matched=1                  matched=1
68                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
69                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
70                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
71              else              else
72                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 62  expand_pkg_groups() { Line 74  expand_pkg_groups() {
74          done          done
75          PACKAGES=$new_packages          PACKAGES=$new_packages
76          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
77            return $matched
78      else      else
79          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
80      fi      fi
81  }  }
82    
83    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
84    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
85    check_for_broken_Ff()  {
86        #  Do we have defaults for $FS and/or $FS90 ?
87        tfs=f
88        tfs9=f90
89        if test "x$FS" != x ; then
90            tfs="$FS"
91        fi
92        if test "x$FS90" != x ; then
93            tfs9="$FS90"
94        fi
95    
96        #  First check the ability to create a *.F/.f pair.
97        cat <<EOF >> genmake_hello.F
98          program hello
99          write(*,*) 'hi'
100          stop
101          end
102    EOF
103        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
104        RETVAL=$?
105        if test "x$RETVAL" != x0 ; then
106            if test "x$FS" = x ; then
107                FS='for'
108                FS90='fr9'
109                check_for_broken_Ff
110            else
111                cat <<EOF 2>&1
112    ERROR: Your file system cannot distinguish between *.F and *.f files
113      (fails the "cp" test) and this program cannot find a suitable
114      replacement extension.  Please try a different build environment or
115      contact the <MITgcm-support@mitgcm.org> list for help.
116    
117    EOF
118                exit -1
119            fi
120            return
121        fi
122        rm -f genmake_hello.*
123    
124        #  Check the ability of ${MAKE} and ${LN} to use the current set
125        #  of extensions.
126        cat <<EOF >> genmake_hello.F
127          program hello
128          write(*,*) 'hi'
129          stop
130          end
131    EOF
132        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
133        cat <<EOF >> $MAKEFILE
134    .SUFFIXES:
135    .SUFFIXES: .$tfs .F
136    .F.$tfs:
137            $LN \$< \$@
138    EOF
139        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
140        RETVAL=$?
141        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
142            if test "x$FS" = x ; then
143                FS='for'
144                FS90='fr9'
145                check_for_broken_Ff
146            else
147                cat <<EOF 2>&1
148    ERROR: Your file system cannot distinguish between *.F and *.f files
149      (fails the "make/ln" test) and this program cannot find a suitable
150      replacement extension.  Please try a different build environment or
151      contact the <MITgcm-support@mitgcm.org> list for help.
152    
153    EOF
154                exit -1
155                return
156            fi
157        fi
158        rm -f genmake_hello.* $MAKEFILE
159        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
160    
161        #  If we make it here, use the extensions
162        FS=$tfs
163        FS90=$tfs9
164        return
165    }
166    
167    
168    look_for_makedepend()  {
169    
170        #  The "original" makedepend is part of the Imake system that is
171        #  most often distributed with XFree86 or with an XFree86 source
172        #  package.  As a result, many machines (eg. generic Linux) do not
173        #  have a system-default "makedepend" available.  For those
174        #  systems, we have two fall-back options:
175        #
176        #    1) a makedepend implementation shipped with the cyrus-imapd
177        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
178        #
179        #    2) a known-buggy xmakedpend shell script
180        #
181        #  So the choices are, in order:
182        #
183        #    1) use the user-specified program
184        #    2) use a system-wide default
185        #    3) locally build and use the cyrus implementation
186        #    4) fall back to the buggy local xmakedpend script
187        #
188        if test "x${MAKEDEPEND}" = x ; then
189            which makedepend > /dev/null 2>&1
190            RV0=$?
191            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
192            #  echo 'MAKEFILE="'$MAKEFILE'"'
193            cat <<EOF >> $MAKEFILE
194    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
195    #
196    #   Some "makedepend" implementations will die if they cannot
197    #   find a Makefile -- so this file is here to gives them an
198    #   empty one to find and parse.
199    EOF
200            cat <<EOF >> genmake_tc.f
201          program test
202          write(*,*) 'test'
203          stop
204          end
205    EOF
206            makedepend genmake_tc.f > /dev/null 2>&1
207            RV1=$?
208            test -f $MAKEFILE  &&  rm -f $MAKEFILE
209            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
210            if test "x${RV0}${RV1}" = x00 ; then
211                MAKEDEPEND=makedepend
212            else
213                echo "    a system-default makedepend was not found."
214    
215                #  Try to build the cyrus implementation
216                build_cyrus_makedepend
217                RETVAL=$?
218                if test "x$RETVAL" != x0 ; then
219                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
220                fi
221                rm -f ./genmake_cy_md
222            fi
223        else
224            #  echo "MAKEDEPEND=${MAKEDEPEND}"
225            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
226            RETVAL=$?
227            if test x"$RETVAL" = x0 ; then
228                build_cyrus_makedepend
229            fi
230        fi
231    }
232    
233    
234    build_cyrus_makedepend()  {
235        rm -f ./genmake_cy_md
236        (
237            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
238                &&  ./configure > /dev/null 2>&1  \
239                &&  make > /dev/null 2>&1
240            if test -x ./makedepend.exe ; then
241                $LN ./makedepend.exe ./makedepend
242            fi
243            ./makedepend ifparser.c > /dev/null 2>&1  \
244                &&  echo "true"
245        ) > ./genmake_cy_md
246        grep true ./genmake_cy_md > /dev/null 2>&1
247        RETVAL=$?
248        rm -f ./genmake_cy_md
249        if test "x$RETVAL" = x0 ; then
250            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
251            return 0
252        else
253            echo "WARNING: unable to build cyrus-imapd-makedepend"
254            return 1
255        fi
256    }
257    
258    
259    build_embed_encode()
260    {
261        printf "  building the embed-encode utility...  "
262        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
263            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
264                echo
265                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
266                echo
267                EMBED_SRC=f
268                return 1
269            fi
270            clist="cc gcc c89 $CC"
271            for ic in $clist ; do
272                comm="$ic -o encode_files encode_files.c"
273                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
274                RETVAL=$?
275                if test "x$RETVAL" = x0 ; then
276                    echo "OK"
277                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
278                    return 0
279                fi
280            done
281            echo
282            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
283            echo "      so it has been disabled"
284            echo
285            EMBED_SRC=f
286            return 1
287        fi
288        echo "OK"
289        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
290    }
291    
292    
293  # Guess possible config options for this host  # Guess possible config options for this host
294  find_possible_configs()  {  find_possible_configs()  {
295    
296      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
297      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
298      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
299        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
300        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
301        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
302        PLATFORM=$tmp3
303        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
304      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
305      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
306  #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
307      echo "test" > test      echo "test" > test
308      ln -s ./test link      ln -s ./test link
309      RETVAL=$?      RETVAL=$?
# Line 103  find_possible_configs()  { Line 320  find_possible_configs()  {
320          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
321      fi      fi
322    
323      # look for possible fortran compilers      look_for_makedepend
324      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
325        #================================================================
326        #  look for possible C compilers
327        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
328        p_CC=
329        for c in $tmp ; do
330            rm -f ./genmake_hello.c  ./genmake_hello
331            cat >> genmake_hello.c << EOF
332    #include <stdio.h>
333    int main(int argc, char **argv) {
334      printf("Hello!\n");
335      return 0;
336    }
337    EOF
338            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
339            RETVAL=$?
340            if test "x${RETVAL}" = x0 ; then
341                p_CC="$p_CC $c"
342            fi
343        done
344        rm -f ./genmake_hello.c ./genmake_hello
345        if test "x${p_CC}" = x ; then
346            cat 1>&2 <<EOF
347    
348    Error: No C compilers were found in your path.  Please specify one using:
349    
350        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
351        2) the CC or MITGCM_CC environment variables.
352    
353    EOF
354            exit 1
355        else
356            echo "  The possible C compilers found in your path are:"
357            echo "   "$p_CC
358            if test "x$CC" = x ; then
359                CC=`echo $p_CC | $AWK '{print $1}'`
360                echo "  Setting C compiler to: "$CC
361            fi
362        fi
363    
364        #================================================================
365        #  look for possible FORTRAN compilers
366        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
367      p_FC=      p_FC=
368      for c in $tmp ; do      for c in $tmp ; do
369          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 380  EOF
380              p_FC="$p_FC $c"              p_FC="$p_FC $c"
381          fi          fi
382      done      done
383        rm -f ./hello.f ./hello
384      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
385          cat 1>&2 <<EOF          cat 1>&2 <<EOF
386    
# Line 128  Error: No Fortran compilers were found i Line 388  Error: No Fortran compilers were found i
388    
389      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
390      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
391      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
392    
393  EOF  EOF
394          exit 1          exit 1
395      else      else
396          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
397          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
398      fi      fi
399    
400      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
401          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
402          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
403              OPTFILE=$p_OF          for i in $p_FC ; do
404              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
405              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
406              break                  echo "  Setting OPTFILE to: "$OPTFILE
407          fi                  break
408      done              fi
409            done
410        fi
411    
412        if test "x$OPTFILE" = x ; then
413            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
414            if test ! -r $OPTFILE ; then
415                 echo "  I looked for the file "$OPTFILE" but did not find it"
416            fi
417        fi
418    #    echo "  The options file:  $p_OF"
419    #    echo "    appears to match so we'll use it."
420    #   for i in $p_FC ; do
421    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
422    #if test -r $p_OF ; then
423    #    OPTFILE=$p_OF
424    #    echo "  The options file:  $p_OF"
425    #    echo "    appears to match so we'll use it."
426    #    break
427    #fi
428    #   done
429      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
430          cat 1>&2 <<EOF          cat 1>&2 <<EOF
431    
# Line 164  Error: No options file was found in:  $R Line 441  Error: No options file was found in:  $R
441  EOF  EOF
442          exit 1          exit 1
443      fi      fi
444        
445  #     # look for possible MPI libraries  #     # look for possible MPI libraries
446  #     mpi_libs=  #     mpi_libs=
447  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 183  EOF Line 460  EOF
460  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
461  #           a=`cat out`  #           a=`cat out`
462  #           for i in $a ; do  #           for i in $a ; do
463  #               case $i in  #               case $i in
464  #                   -*)  #                   -*)
465  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
466  #               esac  #               esac
# Line 202  get_pdepend_list()  { Line 479  get_pdepend_list()  {
479      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
480      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
481      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
482          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
483          > ./.pd_tmp          > ./.pd_tmp
484      source ./.pd_tmp      RETVAL=$?
485        if test ! "x${RETVAL}" = x0 ; then
486          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
487          exit 1
488        fi
489        . ./.pd_tmp
490      rm -f ./.pd_tmp      rm -f ./.pd_tmp
491    
     echo -n "PNAME = "${}  
492  }  }
493    
494    
495  #  Explain usage  #  Explain usage
496  usage()  {  usage()  {
497      echo  cat <<EOF
498      echo "Usage: "$0" [OPTIONS]"  
499      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
500      echo    where [OPTIONS] can be:
501      echo "    -help | --help | -h | --h"  
502      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
503      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
504      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
505      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
506      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
507      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
508      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
509      echo "    -make NAME | -m NAME"  
510      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
511      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
512      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
513      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
514      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
515      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
516      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
517      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
518      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
519      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
520      echo "      -disable=NAME | --disable=NAME"  
521      echo "    -enable NAME | --enable NAME"      -pgroups NAME | --pgroups NAME
522      echo "      -enable=NAME | --enable=NAME"        -pgroups=NAME | --pgroups=NAME
523      echo "    -standarddirs NAME | --standarddirs NAME"            Get the package groups information from "NAME".
524      echo "      -standarddirs=NAME | --standarddirs=NAME"  
525      echo "    -noopt NAME | --noopt NAME"      -bash NAME
526      echo "      -noopt=NAME | --noopt=NAME"            Explicitly specify the Bourne or BASH shell to use
527  #    echo "    -cpp NAME | --cpp NAME"  
528  #    echo "      -cpp=NAME | --cpp=NAME"      -make NAME | -m NAME
529      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"        --make=NAME | -m=NAME
530      echo "      -fc=NAME | --fc=NAME"            Use "NAME" for the MAKE program. The default is "make" but
531      echo "    -[no]ieee | --[no]ieee"            many platforms, "gmake" is the preferred choice.
532      echo "    -[no]mpi | --[no]mpi"  
533      echo "    -[no]jam | --[no]jam"      -makefile NAME | -mf NAME
534      echo        --makefile=NAME | -mf=NAME
535      echo "  and NAME is a string such as:"            Call the makefile "NAME".  The default is "Makefile".
536      echo  
537      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      -makedepend NAME | -md NAME
538      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        --makedepend=NAME | -md=NAME
539      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            Use "NAME" for the MAKEDEPEND program.
540      echo  
541      echo "  which, depending upon your shell, may need to be single-quoted"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
542      echo "  if it contains spaces, dashes, or other special characters."        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
543              Specify the location of the MITgcm ROOTDIR as "NAME".
544              By default, genamke will try to find the location by
545              looking in parent directories (up to the 5th parent).
546    
547        -mods NAME | --mods NAME | -mo NAME | --mo NAME
548          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
549              Here, "NAME" specifies a list of directories that are
550              used for additional source code.  Files found in the
551              "mods list" are given preference over files of the same
552              name found elsewhere.
553    
554        -disable NAME | --disable NAME
555          -disable=NAME | --disable=NAME
556              Here "NAME" specifies a list of packages that we don't
557              want to use.  If this violates package dependencies,
558              genamke will exit with an error message.
559    
560        -enable NAME | --enable NAME
561          -enable=NAME | --enable=NAME
562              Here "NAME" specifies a list of packages that we wish
563              to specifically enable.  If this violates package
564              dependencies, genamke will exit with an error message.
565    
566        -standarddirs NAME | --standarddirs NAME
567          -standarddirs=NAME | --standarddirs=NAME
568              Here, "NAME" specifies a list of directories to be
569              used as the "standard" code.
570    
571        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
572          -fc=NAME | --fc=NAME
573              Use "NAME" as the fortran compiler.  By default, genmake
574              will search for a working compiler by trying a list of
575              "usual suspects" such as g77, f77, etc.
576    
577        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
578              Use "NAME" as the C compiler.  By default, genmake
579              will search for a working compiler by trying a list of
580              "usual suspects" such as gcc, c89, cc, etc.
581    
582        -[no]ieee | --[no]ieee
583              Do or don't use IEEE numerics.  Note that this option
584              *only* works if it is supported by the OPTFILE that
585              is being used.
586    
587        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
588              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
589              *only* works if CPP_EEOPTIONS.h allows this.
590    
591        -ignoretime | -ignore_time | --ignoretime | --ignore_time
592              Ignore all the "wall clock" routines entirely.  This will
593              not in any way hurt the model results -- it simply means
594              that the code that checks how long the model spends in
595              various routines will give junk values.
596    
597        -ts | --ts
598              Produce timing information per timestep
599        -papis | --papis
600              Produce summary MFlop/s (and IPC) with PAPI per timestep
601        -pcls | --pcls
602              Produce summary MFlop/s etc. with PCL per timestep
603        -foolad | --foolad
604              Fool the AD code generator
605        -papi | --papi
606              Performance analysis with PAPI
607        -pcl | --pcl
608              Performance analysis with PCL
609        -hpmt | --hpmt
610              Performance analysis with the HPM Toolkit
611    
612        -gsl | --gsl
613              Use GSL to control floating point rounding and precision
614        -devel | --devel
615              Add additional warning and debugging flags for development
616    
617        -mpi | --mpi
618              Include MPI header files and link to MPI libraries
619        -mpi=PATH | --mpi=PATH
620              Include MPI header files and link to MPI libraries using MPI_ROOT
621              set to PATH. i.e. Include files from \$PATH/include, link to libraries
622              from \$PATH/lib and use binaries from \$PATH/bin.
623    
624        -omp | --omp
625              Activate OpenMP code + use Compiler option OMPFLAG
626        -omp=OMPFLAG | --omp=OMPFLAG
627              Activate OpenMP code + use Compiler option OMPFLAG
628    
629        -es | --es | -embed-source | --embed-source
630              Embed a tarball containing the full source code
631              (including the Makefile, etc.) used to build the
632              executable [off by default]
633    
634      While it is most often a single word, the "NAME" variables specified
635      above can in many cases be a space-delimited string such as:
636    
637        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
638        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
639        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
640    
641      which, depending upon your shell, may need to be single-quoted.
642    
643      For more detailed genmake documentation, please see:
644    
645        http://mitgcm.org/public/devel_HOWTO/
646    
647    EOF
648    
649      exit 1      exit 1
650  }  }
651    
652  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
653  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
654  #eh3 set CPP        = ( '/lib/cpp -P' )  
655  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
656  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
657  #eh3 set FC         = ( 'f77' )          return 0
658  #eh3 set LINK       = $FC      fi
659  #eh3 set MAKEDEPEND = ( 'makedepend' )      echo "running: get_fortran_c_namemangling()" >> $LOGFILE
660  #eh3 set INCLUDES   = ( -I. )  
661  #eh3 set FFLAGS     = (  )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
662  #eh3 set FOPTIM     = (  )  
663  #eh3 set CFLAGS     = (  )      cat > genmake_test.c <<EOF
664  #eh3 set KFLAGS1    = (  )  void tcall( char * string ) { tsub( string ); }
665  #eh3 set KFLAGS2    = (  )  EOF
666  #eh3 set LIBS       = (  )      $MAKE genmake_test.o >> $LOGFILE 2>&1
667  #eh3 set KPPFILES   = (  )      RETVAL=$?
668  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      if test "x$RETVAL" != x0 ; then
669  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          FC_NAMEMANGLE=$default_nm
670            cat <<EOF>> $LOGFILE
671    
672    WARNING: C test compile fails
673    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675    EOF
676            return 1
677        fi
678        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679        RETVAL=$?
680        if test "x$RETVAL" != x0 ; then
681            FC_NAMEMANGLE=$default_nm
682            cat <<EOF>> $LOGFILE
683    
684    WARNING: The "nm" command failed.
685    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687    EOF
688            return 1
689        fi
690        cat > genmake_tcomp.$FS <<EOF
691          subroutine tcall( string )
692          character*(*) string
693          call tsub( string )
694          end
695    EOF
696        $FC $FFLAGS -c genmake_tcomp.$FS >> $LOGFILE 2>&1
697        RETVAL=$?
698        if test "x$RETVAL" != x0 ; then
699            FC_NAMEMANGLE=$default_nm
700            cat <<EOF>> $LOGFILE
701    
702    WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
703    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705    EOF
706            return 1
707        fi
708        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
709        RETVAL=$?
710        if test "x$RETVAL" != x0 ; then
711            FC_NAMEMANGLE=$default_nm
712            cat <<EOF>> $LOGFILE
713    
714    WARNING: The "nm" command failed.
715    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717    EOF
718            return 1
719        fi
720    
721        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
722        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
723        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
724        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
725    
726        nmangle="X"
727        if test "x$c_a" != "x$f_a" ; then
728            comm="echo x$f_a | sed -e 's|x$c_a||'"
729            a=`eval $comm`
730            nmangle="$a ## $nmangle"
731        fi
732        if test "x$c_b" != "x$f_b" ; then
733            comm="echo x$f_b | sed -e 's|x$c_b||'"
734            b=`eval $comm`
735            nmangle="$nmangle ## $b"
736        fi
737    
738        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
739    
740        #  cleanup the testing files
741        rm -f genmake_tcomp.* genmake_test.*
742    }
743    
744    
745    check_HAVE_CLOC()  {
746        echo >> $LOGFILE
747        echo "running: check_HAVE_CLOC()" >> $LOGFILE
748        get_fortran_c_namemangling
749        cat <<EOF > genmake_tc_1.c
750    $FC_NAMEMANGLE
751    #include <stdio.h>
752    #include <stdlib.h>
753    #include <unistd.h>
754    #include <assert.h>
755    #include <sys/time.h>
756    void FC_NAMEMANGLE(cloc) ( double *curtim )
757    {
758     struct timeval tv1;
759     gettimeofday(&tv1 , (void *)NULL );
760     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
761     *curtim = *curtim/1.E6;
762    }
763    EOF
764        COMM="$CC $CFLAGS -c genmake_tc_1.c"
765        echo $COMM >> $LOGFILE
766        $COMM >> $LOGFILE 2>&1
767        RET_C=$?
768        cat <<EOF > genmake_tc_2.$FS
769          program hello
770          REAL*8 wtime
771          external cloc
772          call cloc(wtime)
773          print *," HELLO WORLD", wtime
774          end
775    EOF
776        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
777        echo $COMM >> $LOGFILE
778        $COMM >> $LOGFILE 2>&1
779        RET_F=$?
780        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
781        RETVAL=$?
782        if test "x$RETVAL" = x0 ; then
783            HAVE_CLOC=t
784            DEFINES="$DEFINES -DHAVE_CLOC"
785        fi
786        rm -f genmake_tc*
787    }
788    
789    
790    check_HAVE_SIGREG()  {
791        if test ! "x$HAVE_SIGREG" = x ; then
792            return
793        fi
794        echo >> $LOGFILE
795        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
796        get_fortran_c_namemangling
797        cat <<EOF > genmake_tc_1.c
798    $FC_NAMEMANGLE
799    #include <stdlib.h>
800    #include <stdio.h>
801    #include <signal.h>
802    #include <errno.h>
803    #include <ucontext.h>
804    
805    int * ip;
806    
807    static void killhandler(
808        unsigned int sn, siginfo_t  si, struct ucontext *sc )
809    {
810        *ip = *ip + 1;
811        return;
812    }
813    
814    void FC_NAMEMANGLE(sigreg) (int * aip)
815    {
816        struct sigaction s;
817        ip = aip;
818        s.sa_flags = SA_SIGINFO;
819        s.sa_sigaction = (void *)killhandler;
820        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
821            printf("Sigaction returned error = %d\n", errno);
822            exit(0);
823        }
824        return;
825    }
826    EOF
827        COMM="$CC $CFLAGS -c genmake_tc_1.c"
828        echo $COMM >> $LOGFILE
829        $COMM >> $LOGFILE 2>&1
830        RET_C=$?
831        cat <<EOF > genmake_tc_2.$FS
832          program hello
833          integer anint
834          common /iv/ anint
835          external sigreg
836          call sigreg(anint)
837          end
838    EOF
839        cat genmake_tc_2.$FS >> $LOGFILE
840        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841        echo $COMM >> $LOGFILE
842        $COMM >> $LOGFILE 2>&1
843        RETVAL=$?
844        if test "x$RETVAL" = x0 ; then
845            HAVE_SIGREG=t
846            DEFINES="$DEFINES -DHAVE_SIGREG"
847        fi
848        rm -f genmake_tc*
849    }
850    
851    
852    check_HAVE_SETRLSTK()  {
853        if test "x$HAVE_SETRLSTK" = xt ; then
854            DEFINES="$DEFINES -DHAVE_SETRLSTK"
855            return
856        fi  
857        if test ! "x$HAVE_SETRLSTK" = x ; then
858            return
859        fi
860        echo >> $LOGFILE
861        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
862        get_fortran_c_namemangling
863        cat <<EOF > genmake_tc_1.c
864    $FC_NAMEMANGLE
865    #include <sys/time.h>
866    #include <sys/resource.h>
867    #include <unistd.h>
868    void FC_NAMEMANGLE(setrlstk) ()
869    {
870        struct rlimit rls;
871        rls.rlim_cur = RLIM_INFINITY;
872        rls.rlim_max = RLIM_INFINITY;
873        setrlimit(RLIMIT_STACK, &rls);
874        return;
875    }
876    EOF
877        COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> $LOGFILE 2>&1
880        RET_C=$?
881        cat <<EOF > genmake_tc_2.$FS
882          program hello
883          external setrlstk
884          call setrlstk()
885          end
886    EOF
887        cat genmake_tc_2.$FS >> $LOGFILE
888        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
889        echo $COMM >> $LOGFILE
890        $COMM >> $LOGFILE 2>&1
891        RETVAL=$?
892        if test "x$RETVAL" = x0 ; then
893            HAVE_SETRLSTK=t
894            DEFINES="$DEFINES -DHAVE_SETRLSTK"
895        fi
896        rm -f genmake_tc*
897    }
898    
899    
900    check_HAVE_STAT()  {
901        echo >> $LOGFILE
902        echo "running: check_HAVE_STAT()" >> $LOGFILE
903        get_fortran_c_namemangling
904        cat <<EOF > genmake_tc_1.c
905    $FC_NAMEMANGLE
906    #include <stdio.h>
907    #include <stdlib.h>
908    #include <unistd.h>
909    #include <sys/stat.h>
910    #include <sys/types.h>
911    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
912    {
913        char name[512];
914        struct stat astat;
915    
916        name[0] = 'a'; name[1] = '\0';
917        if (! stat(name, &astat))
918            *nbyte = (int)(astat.st_size);
919        else
920            *nbyte = -1;
921    }
922    EOF
923        COMM="$CC $CFLAGS -c genmake_tc_1.c"
924        echo $COMM >> $LOGFILE
925        $COMM >> genmake_tc.log 2>&1
926        RET_C=$?
927        cat <<EOF > genmake_tc_2.$FS
928          program hello
929          integer nbyte
930          call tfsize(nbyte)
931          print *," HELLO WORLD", nbyte
932          end
933    EOF
934        cat genmake_tc_2.$FS >> $LOGFILE
935        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
936        echo $COMM >> $LOGFILE
937        $COMM >> genmake_tc.log 2>&1
938        RETVAL=$?
939        if test "x$RETVAL" = x0 ; then
940            HAVE_STAT=t
941            DEFINES="$DEFINES -DHAVE_STAT"
942        fi
943        rm -f genmake_tc*
944    }
945    
946    
947    check_netcdf_libs()  {
948        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
949            return
950        fi
951        echo >> $LOGFILE
952        echo "running: check_netcdf_libs()" >> $LOGFILE
953        cat <<EOF > genmake_tnc.F
954          program fgennc
955    #include "netcdf.inc"
956    EOF
957        if test ! "x$MPI" = x ; then
958            echo '#include "mpif.h"' >> genmake_tnc.F
959        fi
960        cat <<EOF >> genmake_tnc.F
961          integer iret, ncid, xid
962          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
963          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
964          iret = nf_def_dim(ncid, 'X', 11, xid)
965          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
966          iret = nf_close(ncid)
967          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
968          end
969    EOF
970        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
971        cat genmake_tnc.F >> genmake_tnc.log
972        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
973        RET_CPP=f
974        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
975        echo "$COMM" >> genmake_tnc.log
976        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
977        if test "x$RET_CPP" = xf ; then
978            echo "  WARNING: CPP failed to pre-process the netcdf test." \
979                >> genmake_tnc.log
980            echo "    Please check that \$INCLUDES is properly set." \
981                >> genmake_tnc.log
982        fi
983        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
984        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
985        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
986            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
987        RET_COMPILE=$?
988        cat genmake_tnc.log >> $LOGFILE
989    
990        #EH3  Remove test program execution for machines that either disallow
991        #EH3  execution or cannot support it (eg. cross-compilers)
992        #EH3
993        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
994        #EH3 RETVAL=$?
995        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
996    
997        if test "x$RET_COMPILE" = x0 ; then
998            HAVE_NETCDF=t
999            echo "check_netcdf: successful" >> $LOGFILE
1000        else
1001            # try again with "-lnetcdf" added to the libs
1002            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1003            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1004            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1005            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1006            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1007                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1008                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1009            RET_COMPILE=$?
1010            echo >> $LOGFILE
1011            cat genmake_tnc.log >> $LOGFILE
1012            if test "x$RET_COMPILE" = x0 ; then
1013                LIBS="$LIBS -lnetcdf"
1014                HAVE_NETCDF=t
1015                echo "check_netcdf: successful" >> $LOGFILE
1016            else
1017            # try again with "-lnetcdff" added to the libs
1018                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1019                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1020                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1021                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1022                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1023                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1024                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1025                RET_COMPILE=$?
1026                echo >> $LOGFILE
1027                cat genmake_tnc.log >> $LOGFILE
1028                if test "x$RET_COMPILE" = x0 ; then
1029                    LIBS="$LIBS -lnetcdff -lnetcdf"
1030                    HAVE_NETCDF=t
1031                    echo "check_netcdf: successful" >> $LOGFILE
1032                fi
1033            fi
1034        fi
1035        rm -f genmake_tnc*
1036    }
1037    
1038    
1039    
1040    ###############################################################################
1041    #   Sequential part of script starts here
1042    ###############################################################################
1043    
1044  #  Set defaults here  #  Set defaults here
1045  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 1048  PLATFORM=
1048  LN=  LN=
1049  S64=  S64=
1050  KPP=  KPP=
1051  FC=  #FC=
1052    #CC=gcc
1053    #CPP=
1054  LINK=  LINK=
1055  DEFINES="-DWORDLENGTH=4"  DEFINES=
1056  PACKAGES=  PACKAGES=
1057  ENABLE=  ENABLE=
1058  DISABLE=  DISABLE=
1059  MAKEFILE=  # MAKEFILE=
1060  MAKEDEPEND=  # MAKEDEPEND=
1061  PDEPEND=  PKG_DEPEND=
1062  DUMPSTATE=t  PKG_GROUPS=
1063  PDEFAULT=  DUMPSTATE=f
1064  OPTFILE=  OPTFILE=
1065  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1066  FFLAGS=  FFLAGS=
1067  FOPTIM=  FOPTIM=
1068    FEXTRAFLAGS=
1069    USE_EXTENDED_SRC=
1070    EXTENDED_SRC_FLAG=
1071  CFLAGS=  CFLAGS=
1072  KFLAGS1=  KFLAGS1=
1073  KFLAGS2=  KFLAGS2=
1074    #LDADD=
1075  LIBS=  LIBS=
1076  KPPFILES=  KPPFILES=
1077  NOOPTFILES=  NOOPTFILES=
1078  NOOPTFLAGS=  NOOPTFLAGS=
1079    MPI=
1080    MPIPATH=
1081    OMP=
1082    OMPFLAG=
1083    USE_R4=
1084    TS=
1085    PAPIS=
1086    PCLS=
1087    FOOLAD=
1088    PAPI=
1089    PCL=
1090    HPMT=
1091    GSL=
1092    DEVEL=
1093    HAVE_TEST_L=
1094    
1095    # DEFINES checked by test compilation or command-line
1096    HAVE_SYSTEM=
1097    HAVE_FDATE=
1098    FC_NAMEMANGLE=
1099    HAVE_CLOC=
1100    # HAVE_SETRLSTK=
1101    HAVE_STAT=
1102    HAVE_NETCDF=
1103    HAVE_ETIME=
1104    IGNORE_TIME=
1105    
1106  MODS=  MODS=
1107  TOOLSDIR=  TOOLSDIR=
1108  SOURCEDIRS=  SOURCEDIRS=
1109  INCLUDEDIRS=  INCLUDEDIRS=
1110  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1111    
1112    G2ARGS=
1113    BASH=
1114  PWD=`pwd`  PWD=`pwd`
1115  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1116  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1117    EMBED_SRC=
1118    THISHOST=`hostname`
1119  THISCWD=`pwd`  THISCWD=`pwd`
1120  THISDATE=`date`  THISDATE=`date`
1121    THISUSER=`echo $USER`
1122    THISVER=
1123  MACHINE=`uname -a`  MACHINE=`uname -a`
1124  EXECUTABLE=  EXECUTABLE=
1125  EXEHOOK=  EXEHOOK=
1126  EXEDIR=  EXEDIR=
1127  PACKAGES_CONF=  PACKAGES_CONF=
1128    IEEE=
1129  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1130      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1131  fi  fi
1132    FS=
1133    FS90=
1134    
1135    AUTODIFF_PKG_USED=f
1136    AD_OPTFILE=
1137    TAF=
1138    AD_TAF_FLAGS=
1139    FTL_TAF_FLAGS=
1140    SVD_TAF_FLAGS=
1141    TAF_EXTRA=
1142    TAMC=
1143    AD_TAMC_FLAGS=
1144    FTL_TAF_FLAGS=
1145    SVD_TAMC_FLAGS=
1146    TAMC_EXTRA=
1147    
1148  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1149  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1150  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1151    
1152  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1153  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1154  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1155  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1156  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1157    gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1158    
1159  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
1160    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1161    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1162    gm_s12="TAF_EXTRA TAMC_EXTRA"
1163    
1164    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1165    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1166    
1167    cat <<EOF
1168    
1169    GENMAKE :
1170    
1171    A program for GENerating MAKEfiles for the MITgcm project.
1172       For a quick list of options, use "genmake2 -h"
1173    or for more detail see the Developer's HOWTO manual at:
1174       http://mitgcm.org/public/docs.html
1175    
1176    EOF
1177    
1178    LOGFILE="genmake.log"
1179    #- clean-up previous genmake logfiles:
1180    rm -f genmake_state genmake_*optfile $LOGFILE
1181    
 echo  
1182  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1183  gm_local="genmake_local"  gm_local="genmake_local"
1184  for i in . $MODS ; do  printf "  getting local config information:  "
1185      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1186      echo "using $gm_local"      echo "using $gm_local"
1187      source $gm_local      . $gm_local
1188      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1189      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1190  else  else
1191      echo "none found"      echo "none found"
1192  fi  fi
1193    
1194  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1195  #parse_options  #parse_options
   
1196  ac_prev=  ac_prev=
1197  for ac_option ; do  for ac_option in "$@" ; do
1198    
1199        G2ARGS="$G2ARGS \"$ac_option\""
1200    
1201      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1202      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 384  for ac_option ; do Line 1204  for ac_option ; do
1204          ac_prev=          ac_prev=
1205          continue          continue
1206      fi      fi
1207        
1208      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1209        
1210      case $ac_option in      case $ac_option in
1211                    
1212          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 399  for ac_option ; do Line 1219  for ac_option ; do
1219          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1220              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1221                    
1222            -adoptfile | --adoptfile | -adof | --adof)
1223                ac_prev=AD_OPTFILE ;;
1224            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1225                AD_OPTFILE=$ac_optarg ;;
1226            
1227          -pdepend | --pdepend)          -pdepend | --pdepend)
1228              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1229          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1230              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1231                    
1232          -pdefault | --pdefault)          -pgroups | --pgroups)
1233              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1234          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1235              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1236                    
1237          -make | --make | -m | --m)          -make | --make | -m | --m)
1238              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1239          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1240              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1241                    
1242            -bash | --bash)
1243                ac_prev=BASH ;;
1244            -bash=* | --bash=*)
1245                BASH=$ac_optarg ;;
1246            
1247            -makedepend | --makedepend | -md | --md)
1248                ac_prev=MAKEDEPEND ;;
1249            -makedepend=* | --makedepend=* | -md=* | --md=*)
1250                MAKEDEPEND=$ac_optarg ;;
1251            
1252          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1253              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1254          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1255              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1256                    
1257          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1258              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1259          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1260              PLATFORM=$ac_optarg ;;              echo
1261                usage
1262                ;;
1263                    
1264          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1265              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 449  for ac_option ; do Line 1286  for ac_option ; do
1286          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1287              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1288    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1289  #           -cpp | --cpp)  #           -cpp | --cpp)
1290  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1291  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1292  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1293                        
1294            -cc | --cc)
1295                ac_prev=CC ;;
1296            -cc=* | --cc=*)
1297                CC=$ac_optarg ;;
1298            
1299          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1300              ac_prev=FC ;;              ac_prev=FC ;;
1301          -fc=* | --fc=*)          -fc=* | --fc=*)
1302              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1303                    
1304            -fs | --fs)
1305                ac_prev=FS ;;
1306            -fs=* | --fs=*)
1307                FS=$ac_optarg ;;
1308            
1309            -fs90 | --fs90)
1310                ac_prev=FS90 ;;
1311            -fs90=* | --fs90=*)
1312                FS90=$ac_optarg ;;
1313            
1314          -ieee | --ieee)          -ieee | --ieee)
1315              IEEE=true ;;              IEEE=true ;;
1316          -noieee | --noieee)          -noieee | --noieee)
1317              IEEE= ;;              IEEE= ;;
1318            
1319            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1320                USE_R4=true ;;
1321    
1322            -ts | --ts)
1323                TS=true ;;
1324            -papis | --papis)
1325                PAPIS=true ;;
1326            -pcls | --pcls)
1327                PCLS=true ;;
1328            -foolad | --foolad)
1329                FOOLAD=true ;;
1330            -papi | --papi)
1331                PAPI=true ;;
1332            -pcl | --pcl)
1333                PCL=true ;;
1334            -hpmt | --hpmt)
1335                HPMT=true ;;
1336    
1337            -gsl | --gsl)
1338                GSL=true ;;
1339    
1340            -devel | --devel)
1341                DEVEL=true ;;
1342    
1343          -mpi | --mpi)          -mpi | --mpi)
1344              MPI=true ;;              MPI=true ;;
1345          -nompi | --nompi)          -mpi=* | --mpi=*)
1346              MPI= ;;              MPIPATH=$ac_optarg
1347                MPI=true ;;
1348                    
1349          -jam | --jam)          -omp | --omp)
1350              JAM=1 ;;              OMP=true ;;
1351          -nojam | --nojam)          -omp=* | --omp=*)
1352              JAM=0 ;;              OMPFLAG=$ac_optarg
1353                OMP=true ;;
1354                    
1355          -ds | --ds)          -ds | --ds)
1356              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1357                    
1358            -taf_extra | --taf_extra)
1359                ac_prev=TAF_EXTRA ;;
1360            -taf_extra=* | --taf_extra=*)
1361                TAF_EXTRA=$ac_optarg ;;
1362    
1363            -tamc_extra | --tamc_extra)
1364                ac_prev=TAMC_EXTRA ;;
1365            -tamc_extra=* | --tamc_extra=*)
1366                TAMC_EXTRA=$ac_optarg ;;
1367            
1368            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1369                IGNORE_TIME="-DIGNORE_TIME" ;;
1370    
1371            -es | --es | -embed-source | --embed-source)
1372                EMBED_SRC=t ;;
1373    
1374          -*)          -*)
1375              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1376              usage              usage
# Line 493  for ac_option ; do Line 1382  for ac_option ; do
1382              ;;              ;;
1383                    
1384      esac      esac
1385        
1386  done  done
1387    
1388    
1389    if test -f ./.genmakerc ; then
1390        echo
1391        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1392        echo "  file.  This file format is no longer supported.  For directions on"
1393        echo "  how to setup and use the new \"genmake2\" script, please see:"
1394        echo "    http://mitgcm.org/devel_HOWTO/"
1395        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1396        echo "WARNING: ignore \"./.genmakerc\" and continue."
1397        echo
1398    fi
1399    
1400    #  Find the MITgcm ${ROOTDIR}
1401  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1402      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1403        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1404          ROOTDIR=".."          ROOTDIR=".."
1405      else      else
1406          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1407              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1408                  ROOTDIR=$d                  ROOTDIR=$d
1409                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1410                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1411                  break                  break
1412              fi              fi
# Line 521  if test ! -d ${ROOTDIR} ; then Line 1424  if test ! -d ${ROOTDIR} ; then
1424      exit 1      exit 1
1425  fi  fi
1426    
1427    #  Find the MITgcm ${THISVER}
1428    version_file="${ROOTDIR}/doc/tag-index"
1429    if test -f $version_file ; then
1430        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1431    #-  remove ./BUILD_INFO.h file if older than version_file
1432        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1433            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1434            rm -f ./BUILD_INFO.h
1435        fi
1436    fi
1437    
1438    if test "x$MAKEFILE" = x ; then
1439        MAKEFILE="Makefile"
1440    fi
1441    
1442  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1443  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1444      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 534  fi Line 1452  fi
1452  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1453      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1454          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1455          source "$OPTFILE"          . "$OPTFILE"
1456          RETVAL=$?          RETVAL=$?
1457          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1458              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1459              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1460              exit 1              exit 1
1461          fi          fi
1462          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1463              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1464          fi          fi
1465      else      else
# Line 550  if test "x$OPTFILE" != xNONE ; then Line 1468  if test "x$OPTFILE" != xNONE ; then
1468      fi      fi
1469  fi  fi
1470    
1471  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
1472  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
1473        if test "x$MITGCM_AD_OF" = x ; then
1474            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1475        else
1476            AD_OPTFILE=$MITGCM_AD_OF
1477        fi
1478    fi
1479    if test "x${AD_OPTFILE}" != xNONE ; then
1480        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1481            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1482            . "$AD_OPTFILE"
1483            RETVAL=$?
1484            if test "x$RETVAL" != x0 ; then
1485                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1486                echo "--please check that variable syntax is bash-compatible"
1487                exit 1
1488            fi
1489            if test "x$DUMPSTATE" = xt ; then
1490                cp -f $AD_OPTFILE "genmake_ad_optfile"
1491            fi
1492        else
1493            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1494            exit 1
1495        fi
1496    fi
1497    
1498    #====================================================================
1499    #  Set default values if not set by the optfile
1500    #
1501    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1502    #  either set defaults or complain and abort!
1503    if test ! "x$BASH" = x ; then
1504        # add a trailing space so that it works within the Makefile syntax (see below)
1505        BASH="$BASH "
1506    fi
1507  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1508      cat <<EOF 1>&2      cat <<EOF 1>&2
1509    
# Line 562  Error: no Fortran compiler: please speci Line 1514  Error: no Fortran compiler: please speci
1514  EOF  EOF
1515      exit 1      exit 1
1516  fi  fi
1517    if test "x$CC" = x ; then
1518        CC=cc
1519    #     cat <<EOF 1>&2
1520    # Error: no C compiler: please specify using one of the following:
1521    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1522    #   2) the "-cc=XXX" command-line option
1523    #   3) the "./genmake_local" file
1524    # EOF
1525    #     exit 1
1526    fi
1527  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1528      LINK=$FC      LINK=$FC
1529  fi  fi
1530    if test "x$MAKE" = x ; then
1531        MAKE="make"
1532    fi
1533  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1534      CPP="cpp"      CPP=cpp
1535  fi  fi
1536  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
1537    #  The following is an ugly little hack to check for $CPP in /lib/ and
1538    #  it should eventually be replaced with a more general function that
1539    #  searches a combo of the user's path and a list of "usual suspects"
1540    #  to find the correct location for binaries such as $CPP.
1541    for i in " " "/lib/" ; do
1542        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1543    done
1544    #EH3 === UGLY ===
1545    echo "#define A a" | $CPP > test_cpp 2>&1
1546  RETVAL=$?  RETVAL=$?
1547  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1548      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 577  Error: C pre-processor "$CPP" failed the Line 1551  Error: C pre-processor "$CPP" failed the
1551    
1552    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1553    2) the "./genmake_local" file    2) the "./genmake_local" file
1554      3) with the CPP environment variable
1555    
1556  EOF  EOF
1557      exit 1      exit 1
1558  else  else
1559      rm -f test_cpp      rm -f test_cpp
1560  fi  fi
1561  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1562      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1563        LN="ln -s"
1564    fi
1565    echo "test" > genmake_test_ln
1566    $LN genmake_test_ln genmake_tlink
1567    RETVAL=$?
1568    if test "x$RETVAL" != x0 ; then
1569        cat <<EOF 1>&2
1570    
1571    Error: The command "ln -s" failed -- please specify a working soft-link
1572      command in the optfile.
1573    
1574    EOF
1575        exit 1
1576    fi
1577    test -L genmake_tlink > /dev/null 2>&1
1578    RETVAL=$?
1579    if test "x$RETVAL" = x0 ; then
1580        HAVE_TEST_L=t
1581    fi
1582    rm -f genmake_test_ln genmake_tlink
1583    
1584    #  Check for broken *.F/*.f handling and fix if possible
1585    check_for_broken_Ff
1586    
1587    if test ! "x$MPI" = x ; then
1588          echo "  Turning on MPI cpp macros"
1589          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1590    fi
1591    if test ! "x$OMP" = x ; then
1592          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1593          FFLAGS="$FFLAGS $OMPFLAG"
1594          F90FLAGS="$F90FLAGS $OMPFLAG"
1595          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1596    fi
1597    
1598    if test ! "x$USE_R4" = x ; then
1599          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1600          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1601    fi
1602    
1603    if test ! "x$TS" = x ; then
1604          echo "  Turning on timing per timestep"
1605          if test ! "x$FOOLAD" = x ; then
1606                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1607          else
1608                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1609          fi
1610          PACKAGES="$PACKAGES showflops"
1611    fi
1612    if test ! "x$PAPIS" = x ; then
1613          echo "  Turning on PAPI flop summary per timestep"
1614          echo "  Please make sure PAPIINC, PAPILIB are defined"
1615          if test ! "x$FOOLAD" = x ; then
1616                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1617          else
1618                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1619          fi
1620          INCLUDES="$INCLUDES $PAPIINC"
1621          LIBS="$LIBS $PAPILIB"
1622          PACKAGES="$PACKAGES showflops"
1623    fi
1624    if test ! "x$PCLS" = x ; then
1625          echo "  Turning on PCL counter summary per timestep"
1626          echo "  Please make sure PCLINC, PCLLIB are defined"
1627          if test ! "x$FOOLAD" = x ; then
1628                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1629          else
1630                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1631          fi
1632          INCLUDES="$INCLUDES $PCLINC"
1633          LIBS="$LIBS $PCLLIB"
1634          PACKAGES="$PACKAGES showflops"
1635    fi
1636    if test ! "x$PAPI" = x ; then
1637          if test ! "x$PAPIS" = x ; then
1638              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1639              echo "  Sticking with PAPI flop summary per timestep!"
1640          else
1641              echo "  Turning on performance analysis with PAPI"
1642              echo "  Please make sure PAPIINC, PAPILIB are defined"
1643              DEFINES="$DEFINES -DUSE_PAPI"
1644              INCLUDES="$INCLUDES $PAPIINC"
1645              LIBS="$LIBS $PAPILIB"
1646          fi
1647    fi
1648    if test ! "x$PCL" = x ; then
1649          if test ! "x$PCLS" = x ; then
1650              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1651              echo "  Sticking with PCL flop summary per timestep!"
1652          else
1653              echo "  Turning on performance analysis with PCL"
1654              echo "  Please make sure PCLINC, PCLLIB are defined"
1655              DEFINES="$DEFINES -DUSE_PCL"
1656              INCLUDES="$INCLUDES $PCLINC"
1657              LIBS="$LIBS $PCLLIB"
1658          fi
1659    fi
1660    if test ! "x$HPMT" = x ; then
1661          if test ! "x$PAPI" = x ; then
1662              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1663              echo "  Sticking with PAPI!"
1664          else if test ! "x$PCL" = x ; then
1665              echo "  PCL and the HPM Toolkit cannot co-exist!"
1666              echo "  Sticking with PCL!"
1667          else
1668              echo "  Turning on performance analysis with the HPM Toolkit"
1669              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1670              DEFINES="$DEFINES -DUSE_LIBHPM"
1671              INCLUDES="$INCLUDES $HPMTINC"
1672              LIBS="$LIBS $HPMTLIB"
1673          fi
1674          fi
1675    fi
1676    if test ! "x$GSL" = x ; then
1677          echo "  Turning on use of GSL to control floating point calculations"
1678          echo "  Please make sure GSLINC, GSLLIB are defined"
1679          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1680          INCLUDES="$INCLUDES $GSLINC"
1681          LIBS="$LIBS $GSLLIB"
1682    fi
1683    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1684    if test ! "x$USE_EXTENDED_SRC" = x ; then
1685          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1686          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1687    fi
1688    
1689    printf "\n===  Checking system libraries  ===\n"
1690    printf "  Do we have the system() command using $FC...  "
1691    cat > genmake_tcomp.$FS <<EOF
1692          program hello
1693          call system('echo hi')
1694          end
1695    EOF
1696    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1697    RETVAL=$?
1698    if test "x$RETVAL" = x0 ; then
1699        HAVE_SYSTEM=t
1700        DEFINES="$DEFINES -DHAVE_SYSTEM"
1701        echo "yes"
1702    else
1703        HAVE_SYSTEM=
1704        echo "no"
1705    fi
1706    rm -f genmake_tcomp*
1707    
1708    printf "  Do we have the fdate() command using $FC...  "
1709    cat > genmake_tcomp.$FS <<EOF
1710          program hello
1711          CHARACTER*(128) string
1712          string = ' '
1713          call fdate( string )
1714          print *, string
1715          end
1716    EOF
1717    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1718    RETVAL=$?
1719    if test "x$RETVAL" = x0 ; then
1720        HAVE_FDATE=t
1721        DEFINES="$DEFINES -DHAVE_FDATE"
1722        echo "yes"
1723    else
1724        HAVE_FDATE=
1725        echo "no"
1726    fi
1727    rm -f genmake_tcomp*
1728    
1729    printf "  Do we have the etime() command using $FC...  "
1730    cat > genmake_tcomp.$FS <<EOF
1731          program hello
1732          REAL*4 ACTUAL, TARRAY(2)
1733          EXTERNAL ETIME
1734          REAL*4 ETIME
1735          actual = etime( tarray )
1736          print *, tarray
1737          end
1738    EOF
1739    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1740    RETVAL=$?
1741    if test "x$RETVAL" = x0 ; then
1742        HAVE_ETIME=t
1743        DEFINES="$DEFINES -DHAVE_ETIME"
1744        echo "yes"
1745    else
1746        HAVE_ETIME=
1747        echo "no"
1748    fi
1749    rm -f genmake_tcomp*
1750    
1751    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1752    check_HAVE_CLOC
1753    if test "x$HAVE_CLOC" != x ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757        if test "x$EMBED_SRC" = xt ; then
1758            echo "    WARNING: you requested file embedding but it has"
1759            echo "      been disabled since C code cannot be called"
1760            EMBED_SRC=
1761        fi
1762    fi
1763    rm -f genmake_t*
1764    
1765    printf "  Can we unlimit the stack size using $FC...  "
1766    check_HAVE_SETRLSTK
1767    if test "x$HAVE_SETRLSTK" = xt ; then
1768        echo "yes"
1769    else
1770        echo "no"
1771  fi  fi
1772    rm -f genmake_t*
1773    
1774    printf "  Can we register a signal handler using $FC...  "
1775    check_HAVE_SIGREG
1776    if test "x$HAVE_SIGREG" = xt ; then
1777        echo "yes"
1778    else
1779        echo "no"
1780    fi
1781    rm -f genmake_t*
1782    
1783    printf "  Can we use stat() through C calls...  "
1784    check_HAVE_STAT
1785    if test "x$HAVE_STAT" != x ; then
1786        echo "yes"
1787    else
1788        echo "no"
1789    fi
1790    rm -f genmake_t*
1791    
1792    printf "  Can we create NetCDF-enabled binaries...  "
1793    check_netcdf_libs
1794    if test "x$HAVE_NETCDF" != x ; then
1795        echo "yes"
1796    else
1797        echo "no"
1798    fi
1799    DEFINES="$DEFINES $IGNORE_TIME"
1800    
1801    if test "x$EMBED_SRC" = xt ; then
1802        build_embed_encode
1803    fi
1804    if test "x$EMBED_SRC" = xt ; then
1805        ENABLE="$ENABLE embed_files"
1806    fi
1807    
1808    
1809  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1810  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1811  for d in $MODS ; do  for d in $MODS ; do
1812      if test ! -d $d ; then      if test ! -d $d ; then
1813          echo          echo
1814          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1815          exit 1          exit 1
1816      else      else
1817          echo -n " $d"          printf "$d "
1818          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1819          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1820      fi      fi
1821  done  done
1822  echo  echo
1823    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1824  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1825      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1826  fi  fi
1827    
1828  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1829      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1830        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1831          EXEDIR=../exe          EXEDIR=../exe
1832      else      else
1833          EXEDIR=.          EXEDIR=.
# Line 621  if test ! -d ${EXEDIR} ; then Line 1838  if test ! -d ${EXEDIR} ; then
1838      exit 1      exit 1
1839  fi  fi
1840    
1841  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
1842      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1843  fi  fi
1844  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1845      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1846      exit 1      exit 1
1847    fi
1848    if test "x$S64" = x ; then
1849        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1850        RETVAL=$?
1851        if test "x${RETVAL}" = x0 ; then
1852            S64='$(TOOLSDIR)/set64bitConst.sh'
1853        else
1854            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1855            RETVAL=$?
1856            if test "x${RETVAL}" = x0 ; then
1857                S64='$(TOOLSDIR)/set64bitConst.csh'
1858            else
1859                cat <<EOF
1860    
1861    ERROR: neither of the two default scripts:
1862    
1863        ${TOOLSDIR}/set64bitConst.sh
1864        ${TOOLSDIR}/set64bitConst.csh
1865    
1866      are working so please check paths or specify (with \$S64) a
1867      working version of this script.
1868    
1869    EOF
1870                exit 1
1871            fi
1872        fi
1873    fi
1874    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1875    
1876    EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1877    
1878    #  Set Standard Code Directories:
1879    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1880        STANDARDDIRS="eesupp model"
1881  fi  fi
1882  if test "x$S64" = x ; then  #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1883      S64='$(TOOLSDIR)/set64bitConst.sh'  echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1884    ckM=$?
1885    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1886    ckE=$?
1887    if test $ckM = 0 -a $ckE = 1 ; then
1888        STANDARDDIRS="$STANDARDDIRS eesupp"
1889  fi  fi
1890    
 EXECUTABLE=${EXECUTABLE:-mitgcmuv}  
   
1891  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1892  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1893  #  they appear as regular source code  #  they appear as regular source code
1894  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1895      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1896      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1897        ) > make_eesupp.errors 2>&1
1898      RETVAL=$?      RETVAL=$?
1899      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1900          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1901      else      else
1902          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1903          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1904          exit 1          exit 1
1905      fi      fi
1906  fi  fi
1907    
1908    #same for pkg/exch2 and pkg/regrid
1909    for pdir in exch2 regrid ; do
1910        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1911            echo "  Making source files in pkg/${pdir} from templates"
1912            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1913            ) > make_${pdir}.errors 2>&1
1914            RETVAL=$?
1915            if test "x${RETVAL}" = x0 ; then
1916                rm -f make_${pdir}.errors
1917            else
1918                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1919                cat make_${pdir}.errors 1>&2
1920                exit 1
1921            fi
1922        fi
1923    done
1924    
1925  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1926  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1927      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1928      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1929          PDEPEND=$tmp  fi
1930      else  if  test "x${PKG_DEPEND}" = x ; then
1931          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1932          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1933  else  else
1934      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1935          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1936          exit 1          exit 1
1937      fi      fi
1938        echo "  getting package dependency info from  $PKG_DEPEND"
1939    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1940        get_pdepend_list $PKG_DEPEND
1941  fi  fi
1942  echo "  getting package dependency info from  $PDEPEND"  
1943  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1944  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1945  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1946      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1947      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1948  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1949  if test ! "x${RETVAL}" = x0 ; then  fi
1950      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1951      exit 1          echo "Warning:  No package groups information was specified."
1952            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1953    else
1954        if test ! -r ${PKG_GROUPS} ; then
1955            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1956            exit 1
1957        fi
1958        echo "  getting package groups info from      $PKG_GROUPS"
1959  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
1960    
1961  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1962  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1963  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1964  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1965      for i in "." $MODS ; do      for i in "." $MODS ; do
1966          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1967                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1968                  break                  break
1969          fi          fi
1970      done      done
1971  fi  fi
1972  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1973      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1974  fi      if test "x${PKG_GROUPS}" = x ; then
1975  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1976      echo "default packages file disabled"          exit 1
1977        fi
1978  else  else
1979      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1980          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1981          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
1982      else      else
1983          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1984          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1985          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1986          RETVAL=$?          RETVAL=$?
1987          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1988              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
1989              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1990              exit 1              exit 1
1991          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
1992      fi      fi
1993  fi  fi
1994    for i in $pkg_list ; do
1995        PACKAGES="$PACKAGES $i"
1996    done
1997    echo     "    before group expansion packages are:$PACKAGES"
1998    if test "x${PKG_GROUPS}" != x ; then
1999        RET=1
2000        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2001        echo "    after group expansion packages are: $PACKAGES"
2002    fi
2003    
2004  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2005    echo "" > ./.tmp_pack
2006    for i in $PACKAGES ; do
2007        echo $i >> ./.tmp_pack
2008    done
2009    for i in `grep  "-" ./.tmp_pack` ; do
2010        j=`echo $i | sed 's/[-]//'`
2011        DISABLE="$DISABLE $j"
2012    done
2013  pack=  pack=
2014  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2015      addit="t"      addit="t"
# Line 736  PACKAGES="$pack" Line 2026  PACKAGES="$pack"
2026  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2027  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2028  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2029    # Test if each explicitly referenced package exists
2030  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2031      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2032          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2033          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2034            exit 1
2035      fi      fi
2036      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2037  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2038  PACKAGES=  PACKAGES=
2039  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2040      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2041  done  done
2042  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2043    echo "    packages are: $PACKAGES"
2044    
2045    #  Check for package MNC: if NetCDF is available, then build the MNC
2046    #  template files ; otherwise, delete mnc from the list of packages.
2047    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2048    mnc_in=$?
2049    if test "x$HAVE_NETCDF" != xt ; then
2050        if test "x$mnc_in" = x0 ; then
2051            cat <<EOF
2052    *********************************************************************
2053    WARNING: the "mnc" package was enabled but tests failed to compile
2054      NetCDF applications.  Please check that:
2055    
2056      1) NetCDF is correctly installed for this compiler and
2057      2) the LIBS variable (within the "optfile") specifies the correct
2058           NetCDF library to link against.
2059    
2060      Due to this failure, the "mnc" package is now DISABLED.
2061    *********************************************************************
2062    EOF
2063            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2064            DISABLE="$DISABLE mnc"
2065        else
2066        #  this prevent to add mnc (due to pdepend rules) if not available
2067            DISABLE="$DISABLE mnc"
2068        fi
2069    else
2070        # we have NetCDF, we try to build MNC template files
2071        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2072        RETVAL=$?
2073        if test "x${RETVAL}" = x0 ; then
2074            rm -f make_mnc.errors
2075        else
2076            echo "Error: problem encountered while building source files in pkg/mnc:"
2077            cat make_mnc.errors 1>&2
2078            if test "x$mnc_in" = x0 ; then
2079                exit 1
2080            else
2081                DISABLE="$DISABLE mnc"
2082            fi
2083        fi
2084    fi
2085    
2086    #  Check for package PROFILES: if NetCDF is not available,
2087    #  then delete profiles from the list of available packages.
2088    if test "x$HAVE_NETCDF" != xt ; then
2089        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2090        RETVAL=$?
2091        if test "x$RETVAL" = x0 ; then
2092            cat <<EOF
2093    *********************************************************************
2094    WARNING: the "profiles" package was enabled but tests failed to
2095      compile NetCDF applications.  Please check that:
2096    
2097      1) NetCDF is correctly installed for this compiler and
2098      2) the LIBS variable (within the "optfile") specifies the correct
2099           NetCDF library to link against.
2100    
2101      Due to this failure, the "profiles" package is now DISABLED.
2102    *********************************************************************
2103    EOF
2104            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2105            DISABLE="$DISABLE profiles"
2106        else
2107        #  this prevent to add profiles (due to pdepend rules) if not available
2108            DISABLE="$DISABLE profiles"
2109        fi
2110    fi
2111    
2112  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2113  ck=    echo "  applying package dependency rules"
2114  while test "x$ck" != xtt ; do    ck=
2115      while test "x$ck" != xtt ; do
2116      i=0      i=0
2117      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2118      rtot=$nname      rtot=$nname
2119      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2120    
2121          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2122          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 769  while test "x$ck" != xtt ; do Line 2128  while test "x$ck" != xtt ; do
2128                  pin="t"                  pin="t"
2129              fi              fi
2130          done          done
2131            #  or in the current $STANDARDDIRS list?
2132            for p in $STANDARDDIRS ; do
2133                if test "x$p" = "x$pname" ; then pin="t" ; fi
2134            done
2135    
2136          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2137          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 791  while test "x$ck" != xtt ; do Line 2154  while test "x$ck" != xtt ; do
2154    
2155          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2156          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2157                #echo "   " $pname ": need to add :" $dname
2158              in_dis="f"              in_dis="f"
2159              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2160                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 811  while test "x$ck" != xtt ; do Line 2175  while test "x$ck" != xtt ; do
2175          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2176          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2177              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2178              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2179              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2180              exit 1              exit 1
2181          fi          fi
2182          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2183            #i=$(( $i + 1 ))
2184      done      done
2185      ck=$ck"t"      ck=$ck"t"
2186  done    done
2187  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2188    fi
2189  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2190      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2191      if test -d $adr ; then      if test -d $adr ; then
2192          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2193          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2194            if test "x$i" = xautodiff ; then
2195                AUTODIFF_PKG_USED=t
2196            fi
2197      else      else
2198          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2199          exit 1          exit 1
2200      fi      fi
2201  done  done
2202    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2203  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2204  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2205  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2206  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2207  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2208  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2209  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2210  all_pack=  all_pack=
2211    DISABLED_PACKAGES=
2212  for n in $names ; do  for n in $names ; do
2213      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2214          has_pack="f"          has_pack="f"
# Line 880  for n in $names ; do Line 2219  for n in $names ; do
2219              fi              fi
2220          done          done
2221          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2222              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2223              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2224          fi          fi
2225      fi      fi
2226  done  done
2227  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2228  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2229      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2230      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2231  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2232    
2233  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2234      case $i in      case $i in
2235          aim_v23)          aim_v23)
2236              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2237              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2238              ;;              ;;
2239      esac      esac
2240  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2241    
2242  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2243    
2244  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2245  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2246  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2247      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2248            adr="$ROOTDIR/$d/src"
2249            if test ! -d $adr ; then
2250                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2251                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2252                exit 1
2253            else
2254                SOURCEDIRS="$SOURCEDIRS $adr"
2255            fi
2256            adr="$ROOTDIR/$d/inc"
2257            if test ! -d $adr ; then
2258                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2259                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2260                exit 1
2261            else
2262                INCLUDEDIRS="$INCLUDEDIRS $adr"
2263            fi
2264        done
2265  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2266    
2267  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2268  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2269  CPP_OPTIONS=  CPP_OPTIONS=
2270    CPP_EEOPTIONS=
2271  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2272    names=`ls -1 "$ROOTDIR/pkg"`
2273  for i in $spaths ; do  for i in $spaths ; do
2274      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2275      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2276          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2277          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2278          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2279            for n in $names ; do
2280                test_for_package_in_cpp_options $CPP_OPTIONS $n
2281            done
2282        fi
2283        try="$i/CPP_EEOPTIONS.h"
2284        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2285            echo "    found CPP_EEOPTIONS=\"$try\""
2286            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2287    #**** not yet enabled ****
2288    #        test_for_mpi_in_cpp_eeoptions $try
2289    #**** not yet enabled ****
2290            CPP_EEOPTIONS="$try"
2291      fi      fi
2292  done  done
2293  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2294      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2295      exit 1      exit 1
2296  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
2297    
2298    #  Here, we build the list of files to be "run through" the adjoint
2299    #  compiler.
2300    if test -f ./adSrcFiles.tmp ; then
2301        rm -f ./adSrcFiles.tmp
2302    fi
2303    echo "  Creating the list of files for the adjoint compiler."
2304    touch adSrcFiles.tmp
2305    for i in $SOURCEDIRS ; do
2306        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2307        for j in $list_files ; do
2308            cat $i/$j >> adSrcFiles.tmp
2309        done
2310    done
2311    if test ! "x"$FS = "x.f" ; then
2312        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2313        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2314    fi
2315    
2316  echo  echo
2317  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2318  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2319  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2320      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2321          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2322      fi      fi
2323  done  done
2324    
2325    if test ! "x$DIVA" = x ; then
2326        echo "  Creating the pseudo-MPI include directory"
2327        INCLUDES="-I./mpi_headers $INCLUDES"
2328        rm -rf ./mpi_headers
2329        mkdir -p ./mpi_headers
2330    
2331        if test "x$MPIINCLUDEDIR" = x ; then
2332            if test "x$MPIHOME" = x ; then
2333                MPIHOME='/usr'
2334            fi
2335            MPIINCLUDEDIR='$MPIHOME/include'
2336        fi
2337    
2338        if test -r $MPIINCLUDEDIR/mpif.h ; then
2339            for i in $MPI_HEADER_FILES; do
2340                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2341            done
2342    
2343            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2344        else
2345            echo " We cannot create a copy of mpif.h!"
2346    #       exit -1
2347        fi
2348    fi
2349    
2350  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2351  rm -rf .links.tmp  rm -rf .links.tmp
2352  mkdir .links.tmp  mkdir .links.tmp
2353    touch .links.tmp/foo
2354    if test ! -r ".links.tmp/foo" ; then
2355        echo
2356        echo "ERROR : something is wrong with your directory permissions or"
2357        echo "   your user file-creation mask (\"umask\") since creating a"
2358        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2359        echo "   not working.  Please try setting your umask to something"
2360        echo "   sane such as:"
2361        echo
2362        echo "      umask 0002"
2363        echo
2364        echo "   and please verify that you have the proper permissions for"
2365        echo "   creating sub-directories and then reading files created"
2366        echo "   within them."
2367        echo
2368        exit 1
2369    fi
2370    rm -f .links.tmp/foo
2371    
2372    if test "x$OPENAD" != x ; then
2373        OAD_DONT_COMPILE="/dev/null"
2374        OAD_DONT_TRANSFORM="/dev/null"
2375        OAD_KEEP_ORIGINAL="/dev/null"
2376        OAD_CB2M_FILES="/dev/null"
2377        echo "  looking for dontCompile file:  "
2378        for i in "." $MODS ; do
2379            if test -r $i"/dontCompile" ; then
2380                OAD_DONT_COMPILE=$i"/dontCompile"
2381                echo "     found $OAD_DONT_COMPILE"
2382                break
2383            fi
2384        done
2385        echo "  looking for dontTransform file:  "
2386        for i in "." $MODS ; do
2387            if test -r $i"/dontTransform" ; then
2388                OAD_DONT_TRANSFORM=$i"/dontTransform"
2389                echo "     found $OAD_DONT_TRANSFORM"
2390                break
2391            fi
2392        done
2393        echo "  looking for keepOriginal file:  "
2394        for i in "." $MODS ; do
2395            if test -r $i"/keepOriginal" ; then
2396                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2397                echo "     found $OAD_KEEP_ORIGINAL"
2398                break
2399            fi
2400        done
2401        echo "  looking for cb2mFiles:  "
2402        for i in "." $MODS ; do
2403            if test -r $i"/cb2mFiles" ; then
2404                OAD_CB2M_FILES=$i"/cb2mFiles"
2405                echo "     found $OAD_CB2M_FILES"
2406                break
2407            fi
2408        done
2409        echo "   OpenAD exceptions:  "
2410    fi
2411    
2412  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2413  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2414  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2415  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2416  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2417  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2418    printf 'H_SRC_FILES = '   > hsrclist.tmp
2419    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2420  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2421  for d in $alldirs ; do  for d in $alldirs ; do
2422      deplist=      deplist=
2423      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2424      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2425        if test "x$OPENAD" != x ; then
2426            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2427        fi
2428      for sf in $sfiles ; do      for sf in $sfiles ; do
2429          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2430              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2431                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2432                  touch .links.tmp/$sf                  case $d/$sf in
2433                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2434                  case $extn in                          ignore_f=t
2435                      F)                          ;;
2436                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2437                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2438                            ;;
2439                      ./FC_NAMEMANGLE.h)
2440                            ignore_f=t
2441                            ;;
2442                      ./BUILD_INFO.h)
2443                            ignore_f=t
2444                            ;;
2445                      ./EMBEDDED_FILES.h)
2446                            ignore_f=t
2447                            ;;
2448                      *)
2449                            #  For the local directory *ONLY*,
2450                            #  ignore all soft-links
2451                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2452                                ignore_f=t
2453                            else
2454                                touch .links.tmp/$sf
2455                                deplist="$deplist $sf"
2456                            fi
2457                            ;;
2458                    esac
2459                    if test "x$ignore_f" = xf ; then
2460                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2461                        case $extn in
2462                          F)
2463                            echo    " \\"  >> F77srclist.tmp
2464                            printf " $sf" >> F77srclist.tmp
2465                            if test "x$OPENAD" != x ; then
2466                                basename=${sf%%.F}
2467                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2468                                if test -z "$isAD" ; then
2469                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2470                                    if test -z "$toBeIgnored" ; then
2471                                        echo    " \\"  >> nonADF77srclist.tmp
2472                                        printf " $sf" >> nonADF77srclist.tmp
2473                                    else
2474                                        echo "    not to be compiled   :  $sf"
2475                                    fi
2476                                else # file is initially listed as an AD file we want to exclude it
2477                                     # or we want to retain the untransformed version
2478                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2479                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2480                                    if test -n "$notToBeTransformed"; then
2481                                        echo "    not to be transformed:  $sf"
2482                                    fi
2483                                    if test -n "$untransformedVersionToBeKept" ; then
2484                                        echo "    original to be kept  :  $sf"
2485                                    fi
2486                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2487                                        echo    " \\"  >> nonADF77srclist.tmp
2488                                        printf " $sf" >> nonADF77srclist.tmp
2489                                    fi
2490                                fi
2491                            fi
2492                          ;;                          ;;
2493                      F90)                      F90)
2494                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2495                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2496                          ;;                          ;;
2497                      c)                      c)
2498                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2499                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2500                          ;;                          ;;
2501                      h)                      h)
2502                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2503                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2504                          ;;                          ;;
2505                  esac                      flow)
2506                            echo    " \\"  >> ad_flow_files.tmp
2507                            printf " $sf" >> ad_flow_files.tmp
2508                            ;;
2509                       esac
2510                    fi
2511              fi              fi
2512          fi          fi
2513      done      done
2514      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2515          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2516            echo "" >> srclinks.tmp
2517          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2518          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2519          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2520    # This may happen when make thinks that a header file has to be "remade"
2521    # because a module it depends on has changed.  In this case we do nothing.
2522            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2523          fi
2524      fi      fi
2525  done  done
2526  rm -rf .links.tmp  rm -rf .links.tmp
2527  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2528  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2529  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2530  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2531    echo "" >> hsrclist.tmp
2532    echo "" >> ad_flow_files.tmp
2533    
2534    CMDLINE=$0
2535    for xx in "$@" ; do nw=`echo $xx | wc -w`
2536        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2537                            else CMDLINE="$CMDLINE '$xx'" ; fi
2538    done
2539    
2540  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2541      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2542  fi  fi
2543  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2544  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1061  echo "#    $MACHINE" >> $MAKEFILE Line 2546  echo "#    $MACHINE" >> $MAKEFILE
2546  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2547  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2548  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2549  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2550  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2551  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2552    
2553    EXE_AD=$EXECUTABLE"_ad"
2554    EXE_FTL=$EXECUTABLE"_ftl"
2555    EXE_SVD=$EXECUTABLE"_svd"
2556    
2557  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2558  #  #
2559    # OPTFILE="$OPTFILE"
2560    #
2561  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2562  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2563  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1085  cat >>$MAKEFILE <<EOF Line 2577  cat >>$MAKEFILE <<EOF
2577  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2578    
2579  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2580  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2581  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2582  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2583  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2584  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2585  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2586    
2587    #eh3  new defines for the adjoint work
2588    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2589    EXE_AD      = ${EXE_AD}
2590    EXE_FTL     = ${EXE_FTL}
2591    EXE_SVD     = ${EXE_SVD}
2592    
2593    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2594    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2595    
2596    # These files are created by Makefile
2597    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2598  EOF  EOF
2599    
2600  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2601        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2602    else
2603        echo "EMBEDDED_FILES = " >>$MAKEFILE
2604    fi
2605    
2606  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2607  # Unix ln (link)  # Unix ln (link)
2608  LN = ${LN}  LN = ${LN}
# Line 1109  KPP = ${KPP} Line 2616  KPP = ${KPP}
2616  FC = ${FC}  FC = ${FC}
2617  # Fortran compiler  # Fortran compiler
2618  F90C = ${F90C}  F90C = ${F90C}
2619    # C compiler
2620    CC = ${CC}
2621  # Link editor  # Link editor
2622  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2623    
2624  # Defines for CPP  # Defines for CPP
2625  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1120  INCLUDES = ${INCLUDES} Line 2629  INCLUDES = ${INCLUDES}
2629  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2630  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2631  # Optim./debug for FC  # Optim./debug for FC
2632  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2633  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2634  # Optim./debug for FC  # Optim./debug for FC
2635  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2636  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2637    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2638  # Flags for CC  # Flags for CC
2639  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2640  # Files that should not be optimized  # Files that should not be optimized
2641  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2642  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2643  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2644  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2645  # Name of the Mekfile  # Name of the Mekfile
2646  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2647    
2648  EOF  EOF
2649    
2650  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2651  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2652  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2653  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2654  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2655  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2656  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2657    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2658  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2659    echo >> $MAKEFILE
2660    
2661    # add definitions for preprocessed sources
2662    # and note that not all systems allow case sensitive extensions
2663    # hence the $FS and $FS90 here.
2664    # for fixed format f90 files we use ff90 or FF90 resp
2665    # but these are not expected to be the original source files
2666    
2667    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2668    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2669    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2670    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2671    echo >> $MAKEFILE
2672    echo '.SUFFIXES:' >> $MAKEFILE
2673    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2674    
2675  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2676    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2677  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2678  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2679            @echo Creating \$@ ...
2680          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2681  depend:  depend:
2682          @make links          @make links
2683          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2684          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2685            -rm -f makedepend.out
2686    
2687    lib: libmitgcmuv.a
2688    
2689    libmitgcmuv.a: \$(OBJFILES)
2690            ar rcv libmitgcmuv.a \$(OBJFILES)
2691            ar d   libmitgcmuv.a main.o
2692    
2693  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2694    
2695  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2696    
2697  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2698          @printf 'running ... '          @printf 'running ... '
2699          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2700    
2701    # remove most of the files that "make" generates
2702  clean:  clean:
2703          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2704            -rm -rf *.o
2705            -rm -rf *.$FS *.flowdir
2706            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2707    
2708    # remove most of the files that "make" and "make depend" generate
2709  Clean:  Clean:
2710          @make clean          @make clean
2711          @make cleanlinks          @make cleanlinks
2712          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log
2713            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2714            -rm -f genmake_warnings genmake_errors make.log
2715    
2716    # remove also the executable, files that "genmake2" generates (except Makefile)
2717    #         and output from a run (plus log files from testreport)
2718  CLEAN:  CLEAN:
2719          @make Clean          @make Clean
2720            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak $MAKEFILE.old
2721            -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log
2722          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2723          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2724          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2725          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2726            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2727            -rm -rf mnc_test_*
2728    
2729  makefile:  makefile:
2730          ${0} $@          $THIS_SCRIPT $G2ARGS
2731  cleanlinks:  cleanlinks:
2732          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2733    
2734  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2735  .F.f:  ${PACKAGES_DOT_H}:
2736            @echo Creating \$@ ...
2737            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2738    AD_CONFIG.h:
2739            @echo Creating \$@ ...
2740            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2741    FC_NAMEMANGLE.h:
2742            @echo Creating \$@ ...
2743            echo "$FC_NAMEMANGLE" > \$@
2744    
2745    BUILD_INFO.h:
2746            @echo Creating \$@ ...
2747    EOF
2748    
2749    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2750    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2751    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2752    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2753    
2754    if test "x$EMBED_SRC" = xt ; then
2755        cat >>$MAKEFILE <<EOF
2756    
2757    decode_files.o : EMBEDDED_FILES.h
2758    
2759    ##  \$(F77_PP_SRC_FILES)
2760    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2761            @echo Creating \$@ ...
2762            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2763            -rm -f all_fF.tar.gz
2764            -gzip all_fF.tar
2765    
2766    EMBEDDED_FILES.h : all_fF.tar.gz
2767            @echo Creating \$@ ...
2768            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2769    
2770    EOF
2771    fi
2772    
2773    cat >>$MAKEFILE <<EOF
2774    
2775    # The normal chain of rules is (  .F - .$FS - .o  )
2776    
2777    ## This nullifies any default implicit rules concerning these two file types:
2778    ## %.o : %.F
2779    
2780    .F.$FS:
2781          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2782  .f.o:  .$FS.o:
2783          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2784  .F90.f90:  .F90.$FS90:
2785            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2786    .FF90.f$FS90:
2787          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2788  .f90.o:  .$FS90.o:
2789          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2790    .f$FS90.o:
2791            cp \$< \$(basename  \$<).f90
2792            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2793  .c.o:  .c.o:
2794          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2795    .flow.flowdir:
2796            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2797    
2798  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2799  .F.p:  .F.p:
2800          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2801  .p.f:  .p.$FS:
2802          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2803    
2804  EOF  EOF
2805    
2806    #=========================================
2807    #===  Automatic Differentiation Rules  ===
2808    #===  for TAMC/TAF  ======================
2809    
2810    if test "x$OPENAD" = x ; then
2811    
2812    cat >>$MAKEFILE <<EOF
2813    
2814    TAMC           = ${TAMC}
2815    TAF            = ${TAF}
2816    
2817    TAF_EXTRA      = ${TAF_EXTRA}
2818    TAMC_EXTRA     = ${TAMC_EXTRA}
2819    
2820    EOF
2821    
2822    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2823    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2824    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2825    for i in $ad_vars ; do
2826        name=$i
2827        t1="t2=\$"`echo "$i"`
2828        eval $t1
2829        printf "%-20s = " $name >> $MAKEFILE
2830        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2831    done
2832    
2833    echo "  Add the source list for AD code generation"
2834    echo >> $MAKEFILE
2835    printf "AD_FILES = " >> $MAKEFILE
2836    AD_FILES=`cat adSrcFiles.tmp`
2837    for i in $AD_FILES ; do
2838        echo    " \\" >> $MAKEFILE
2839        printf " $i" >> $MAKEFILE
2840    done
2841    echo >> $MAKEFILE
2842    rm -f adSrcFiles.tmp
2843    
2844    cat >>$MAKEFILE <<EOF
2845    
2846    # ... AD ...
2847    adall: \$(EXE_AD)
2848    adtaf: ad_taf_output.$FS
2849    adtamc: ad_tamc_output.$FS
2850    
2851    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2852            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2853            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2854            -rm -f ad_config.template
2855            @make \$(F77_PP_SRC_FILES)
2856            @make \$(FLOFILES)
2857            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2858    
2859    ad_taf_output.$FS: ad_input_code.$FS
2860            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2861            ls -l ad_input_code_ad.$FS
2862            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2863    
2864    adtafonly:
2865            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2866            ls -l ad_input_code_ad.$FS
2867            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2868    
2869    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2870            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2871    
2872    ad_tamc_output.$FS: ad_input_code.$FS
2873            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2874            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2875    
2876    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2877            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2878    
2879    adonlyfwd:
2880            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2881    
2882    adtrick:
2883            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2884    
2885    # ... FTL ...
2886    ftlall: ftl_taf
2887    ftltaf: ftl_taf_output.$FS
2888    ftltamc: ftl_tamc_output.$FS
2889    
2890    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2891            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2892            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2893            -rm -f ftl_config.template
2894            @make \$(F77_PP_SRC_FILES)
2895            @make \$(AD_FLOW_FILES)
2896            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2897    
2898    ftl_taf_output.$FS: ftl_input_code.$FS
2899            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2900            ls -l ftl_input_code_ftl.$FS
2901            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2902    
2903    ftltafonly:
2904            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2905            ls -l ftl_input_code_ftl.$FS
2906            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2907    
2908    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2909            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2910    
2911    ftl_tamc_output.$FS: ftl_input_code.$FS
2912            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2913            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2914    
2915    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2916            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2917    
2918    
2919    # ... SVD ...
2920    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2921            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2922            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2923    svdall: svd_touch svd_taf
2924    
2925    svd_taf: \$(OBJFILES)
2926            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2927    
2928            @echo "--->>> Only COMPILE svd code! <<<---"
2929            @echo "--->>> Assumes you previously <<<---"
2930            @echo "--->>> did make svdtaf        <<<---"
2931    
2932    svd_touch:
2933            @echo "--->>> Only COMPILE svd code! <<<---"
2934            @echo "--->>> Assumes you previously <<<---"
2935            @echo "--->>> did make svdtaf        <<<---"
2936            touch ad_taf_output.$FS ftl_taf_output.$FS
2937            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2938            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2939            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2940            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2941            -rm -f ftl_config.template
2942    
2943    EOF
2944    
2945    fi
2946    
2947    #===  for OpenAD  ========================
2948    
2949    if test "x$OPENAD" != x ; then
2950    
2951    # ============ begin OpenAD specific section ==============
2952    
2953    cat >>$MAKEFILE <<EOF
2954    
2955    # all the source files linked from the various locations:
2956    ALL_LINKED_FILES= \
2957    \$(F77_SRC_FILES) \
2958    \$(C_SRC_FILES) \
2959    \$(H_SRC_FILES) \
2960    \$(F90_SRC_FILES) \
2961    \$(SPECIAL_FILES)
2962    
2963    ifndef OPENADROOT
2964      \$(error "Error:  environment variable OPENADROOT not defined!")
2965    endif
2966    
2967    ifndef XAIFSCHEMAROOT
2968      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2969    endif
2970    
2971    ifndef XAIFBOOSTERROOT
2972      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2973    endif
2974    
2975    EOF
2976    
2977    echo "  Add the source list for common block to module conversion "
2978    echo >> $MAKEFILE
2979    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2980    for i in `cat ${OAD_CB2M_FILES}` ; do
2981      echo    " \\" >> $MAKEFILE
2982      printf " $i" >> $MAKEFILE
2983    done
2984    echo >> $MAKEFILE
2985    
2986    echo "  Add the source list for AD code generation"
2987    echo >> $MAKEFILE
2988    printf "AD_FILES = " >> $MAKEFILE
2989    for i in `cat ${OAD_CB2M_FILES}` ; do
2990      echo    " \\" >> $MAKEFILE
2991      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2992    done
2993    AD_FILES=`cat adSrcFiles.tmp`
2994    for i in $AD_FILES ; do
2995      basename=${i%%.f}
2996      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2997      if test -z "$toBeIgnored" ; then
2998        echo    " \\" >> $MAKEFILE
2999        printf " $i" >> $MAKEFILE
3000      fi
3001    done
3002    echo >> $MAKEFILE
3003    rm -f adSrcFiles.tmp
3004    
3005    cat >>$MAKEFILE <<EOF
3006    
3007    adAll: \$(EXE_AD)
3008    .PHONY: adAll
3009    
3010    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3011    
3012    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3013    
3014    .PHONY: adDepend
3015    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3016            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3017            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3018            -rm -f makedepend.out
3019    
3020    OPENAD_SUPPORT_F90_SRC_FILES = \
3021    w2f__types.F90 \
3022    OAD_active.F90 \
3023    OAD_cp.F90 \
3024    OAD_rev.F90 \
3025    OAD_tape.F90
3026    
3027    OPENAD_SUPPORT_C_SRC_FILES = \
3028    iaddr.c \
3029    timeRatio.c
3030    
3031    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3032            cat \$^ > \$@
3033    
3034    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3035            cat \$^ > \$@
3036    
3037    f95_test.out: f95_test_mods.f90 f95_test.f90
3038            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3039            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3040    
3041    # the file included below is created by the
3042    # postProcessor and its inclusion sets the
3043    # variable POSTPROCESSEDFILES
3044    # used below. Because the file is made during
3045    # make it won't be read until the second (recursive)
3046    # invocation in the rule below
3047    -include postProcess.make
3048    
3049    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3050    
3051    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3052    
3053    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3054    ifeq (\$(MAKELEVEL),0)
3055            \$(MAKE) adAll
3056    else
3057            touch \$@
3058    endif
3059    
3060    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3061    ifeq (\$(MAKELEVEL),1)
3062            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3063    else
3064            touch \$@
3065    endif
3066    
3067    # makefile debug rule
3068    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3069    .PHONY: openad
3070    
3071    # create the module files
3072    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3073            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3074    
3075    # create the header files
3076    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3077            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3078    
3079    # change everybody else to use the new module files:
3080    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3081            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3082    
3083    # makefile debug rule
3084    small_f: \$(CB2M_F90_PP_SRC_FILES)
3085    .PHONY: small_f
3086    
3087    ad_output.txt: \$(EXE_AD)
3088            @printf 'linking data files ... '
3089            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3090            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3091            @printf 'running ... '
3092            @./\$(EXE_AD) > \$@
3093    
3094    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3095    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3096            cat \$^ > \$@
3097    
3098    # strip all comments and blanks to reduce
3099    # the file size in order to reduce perl's memory requirements
3100    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3101            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3102    
3103    # mfef90 preprocessing
3104    # expand statement functions
3105    # expose mfef90 specific substring handling
3106    # add the w2f__types module
3107    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3108            ./mfef90 -r8 -z -F -N132 \$<
3109            mv \$<.B \$(basename \$<).B
3110            ./whirl2f -openad \$(basename \$<).B
3111            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3112    
3113    # canonicalizer
3114    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3115            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3116    
3117    # F -> WHIRL
3118    # note that the canonicalized version cuts off at col 72
3119    # doing this also for string constants which is ok as long
3120    # as we are in fixed mode and cut of exactly there.
3121    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3122    # characters respectively.
3123    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3124            ./mfef90 -r8 -z -F \$<
3125            mv \$<.B \$@
3126    
3127    # WHIRL -> XAIF
3128    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3129            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3130    
3131    # XAIF -> XAIF'
3132    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3133            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3134    
3135    # XAIF' -> WHIRL'
3136    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3137            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3138    
3139    # WHIRL' -> F'
3140    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3141            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3142    
3143    # insert template directives
3144    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3145            ../OAD_support/insertTemplateDir.bash \$< \$@
3146    
3147    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3148    # postprocess F'
3149    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3150            # the target is a placeholder to signal execution of the rule
3151            touch \$@
3152            # this step also creates the file postProcess.make but we cannot
3153            # name it as the target or else make will try to remake it for
3154            # the include directive above for any rule, e.g. make clean
3155            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3156    
3157    # setup some links
3158    %.xsd:
3159            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3160    
3161    mfef90:
3162            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3163    
3164    # link the support files:
3165    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3166            \$(LN) ../OAD_support/\$@ .
3167    
3168    whirl2xaif xaif2whirl:
3169            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3170    
3171    preProcess.py postProcess.py:
3172            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3173    
3174    whirl2f whirl2f_be:
3175            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3176    
3177    oadDriver:
3178            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3179    
3180    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3181    
3182    # ============ end OpenAD specific section ==============
3183    
3184    EOF
3185    
3186    fi
3187    
3188    #=========================================
3189    
3190  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3191      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3192  fi  fi
# Line 1217  for i in $KPPFILES ; do Line 3198  for i in $KPPFILES ; do
3198      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3199          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3200      fi      fi
3201      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3202  done  done
3203    
3204  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1227  for i in $NOOPTFILES ; do Line 3208  for i in $NOOPTFILES ; do
3208      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3209          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3210      fi      fi
3211      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3212      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3213  done  done
3214    
# Line 1240  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3221  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3221    
3222  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3223    
3224    # Create special header files
3225    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3226    if test ! -f $PACKAGES_DOT_H ; then
3227        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3228    else
3229        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3230        RETVAL=$?
3231        if test "x$RETVAL" = x0 ; then
3232            rm -f $PACKAGES_DOT_H".tmp"
3233        else
3234            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3235            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3236        fi
3237    fi
3238    if test ! -f AD_CONFIG.h ; then
3239        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3240    fi
3241    
3242    
3243  #  Write the "state" for future records  #  Write the "state" for future records
3244  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3245      echo -n "" > genmake_state      printf "" > genmake_state
3246      for i in $gm_state ; do      for i in $gm_state ; do
3247          t1="t2=\$$i"          t1="t2=\$$i"
3248          eval $t1          eval $t1

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