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revision 1.11 by edhill, Mon Sep 29 16:15:23 2003 UTC revision 1.74 by adcroft, Wed Mar 24 17:12:51 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            printf "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70            return $matched
71        else
72            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73        fi
74    }
75    
76  # Guess possible config options for this host  # Guess possible config options for this host
77  find_possible_configs()  {  find_possible_configs()  {
78    
79      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
80      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
81      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
82        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
83        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
84        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
85        PLATFORM=$tmp3
86      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
87      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
88            
89      echo "test" > test      echo "test" > test
90      ln -s ./test link      ln -s ./test link
# Line 45  find_possible_configs()  { Line 102  find_possible_configs()  {
102          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
103      fi      fi
104    
105        #  The "original" makedepend is part of the Imake system that is
106        #  most often distributed with XFree86 or with an XFree86 source
107        #  package.  As a result, many machines (eg. generic Linux) do not
108        #  have a system-default "makedepend" available.  For those
109        #  systems, we have two fall-back options:
110        #
111        #    1) a makedepend implementation shipped with the cyrus-imapd
112        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
113        #
114        #    2) a known-buggy xmakedpend shell script
115        #
116        #  So the choices are, in order:
117        #
118        #    1) use the user-specified program
119        #    2) use a system-wide default
120        #    3) locally build and use the cyrus implementation
121        #    4) fall back to the buggy local xmakedpend script
122        #
123        if test "x${MAKEDEPEND}" = x ; then
124          which makedepend > /dev/null 2>&1
125          RETVAL=$?
126          if test ! "x${RETVAL}" = x0 ; then
127             echo "    a system-default makedepend was not found."
128    
129             #  Try to build the cyrus impl
130             rm -f ./genmake_cy_md
131             (
132                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
133                     &&  ./configure > /dev/null 2>&1  \
134                     &&  make > /dev/null 2>&1  \
135                     &&  ./makedepend ifparser.c > /dev/null 2>&1  \
136                     &&  echo "true"
137             ) > ./genmake_cy_md
138             grep true ./genmake_cy_md > /dev/null 2>&1
139             RETVAL=$?
140             if test "x$RETVAL" = x0 ; then
141                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
142             else
143                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
144             fi
145             rm -f ./genmake_cy_md
146          fi
147        fi
148    
149      # look for possible fortran compilers      # look for possible fortran compilers
150      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
151      p_FC=      p_FC=
152      for c in $tmp ; do      for c in $tmp ; do
153          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 63  EOF Line 164  EOF
164              p_FC="$p_FC $c"              p_FC="$p_FC $c"
165          fi          fi
166      done      done
167        rm -f ./hello.f ./hello
168      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
169          cat 1>&2 <<EOF          cat 1>&2 <<EOF
170    
# Line 78  EOF Line 180  EOF
180          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
181          echo "   "$p_FC          echo "   "$p_FC
182          if test "x$FC" = x ; then          if test "x$FC" = x ; then
183              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
184                echo "  Setting FORTRAN compiler to: "$FC
185          fi          fi
186      fi      fi
187    
188      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
189          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
190          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
191              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
192              echo "  The options file:  $p_OF"          fi
193              echo "    appears to match so we'll use it."      fi
194              break  #    echo "  The options file:  $p_OF"
195          fi  #    echo "    appears to match so we'll use it."
196      done  #   for i in $p_FC ; do
197    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
198    #if test -r $p_OF ; then
199    #    OPTFILE=$p_OF
200    #    echo "  The options file:  $p_OF"
201    #    echo "    appears to match so we'll use it."
202    #    break
203    #fi
204    #   done
205      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
206          cat 1>&2 <<EOF          cat 1>&2 <<EOF
207    
# Line 144  get_pdepend_list()  { Line 255  get_pdepend_list()  {
255      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
256      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
257      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
258          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
259          > ./.pd_tmp          > ./.pd_tmp
260      source ./.pd_tmp      . ./.pd_tmp
261      rm -f ./.pd_tmp      rm -f ./.pd_tmp
262    
263      echo -n "PNAME = "${}      printf "PNAME = "${}
264  }  }
265    
266    
267  #  Explain usage  #  Explain usage
268  usage()  {  usage()  {
269      echo  cat <<EOF
270      echo "Usage: "$0" [OPTIONS]"  
271      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
272      echo    where [OPTIONS] can be:
273      echo "    -help | --help | -h | --h"  
274      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
275      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
276      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
277      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
278      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
279      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
280      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
281      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
282      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
283      echo "    -makefile NAME | -mf NAME"  
284      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
285      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
286      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
287      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
288      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
289      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
290      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
291      echo "    -disable NAME | --disable NAME"  
292      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
293      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
294      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
295      echo "    -noopt NAME | --noopt NAME"            many platforms, "gmake" is the preferred choice.
296      echo "      -noopt=NAME | --noopt=NAME"  
297  #    echo "    -cpp NAME | --cpp NAME"      -makefile NAME | -mf NAME
298  #    echo "      -cpp=NAME | --cpp=NAME"        --makefile=NAME | -mf=NAME
299      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Call the makefile "NAME".  The default is "Makefile".
300      echo "      -fc=NAME | --fc=NAME"  
301      echo "    -[no]ieee | --[no]ieee"      -makedepend NAME | -md NAME
302      echo "    -[no]mpi | --[no]mpi"        --makedepend=NAME | -md=NAME
303      echo "    -[no]jam | --[no]jam"            Use "NAME" for the MAKEDEPEND program.
304      echo  
305      echo "  and NAME is a string such as:"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
306      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
307      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Specify the location of the MITgcm ROOTDIR as "NAME".
308      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            By default, genamke will try to find the location by
309      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            looking in parent directories (up to the 5th parent).
310      echo  
311      echo "  which, depending upon your shell, may need to be single-quoted"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
312      echo "  if it contains spaces, dashes, or other special characters."        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
313              Here, "NAME" specifies a list of directories that are
314              used for additional source code.  Files found in the
315              "mods list" are given preference over files of the same
316              name found elsewhere.
317    
318        -disable NAME | --disable NAME
319          -disable=NAME | --disable=NAME
320              Here "NAME" specifies a list of packages that we don't
321              want to use.  If this violates package dependencies,
322              genamke will exit with an error message.
323    
324        -enable NAME | --enable NAME
325          -enable=NAME | --enable=NAME
326              Here "NAME" specifies a list of packages that we wish
327              to specifically enable.  If this violates package
328              dependencies, genamke will exit with an error message.
329    
330        -standarddirs NAME | --standarddirs NAME
331          -standarddirs=NAME | --standarddirs=NAME
332              Here, "NAME" specifies a list of directories to be
333              used as the "standard" code.
334    
335        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
336          -fc=NAME | --fc=NAME
337              Use "NAME" as the fortran compiler.  By default, genmake
338              will search for a working compiler by trying a list of
339              "usual suspects" such as g77, f77, etc.
340    
341        -[no]ieee | --[no]ieee
342              Do or don't use IEEE numerics.  Note that this option
343              *only* works if it is supported by the OPTFILE that
344              is being used.
345    
346        -mpi | --mpi
347              Include MPI header files and link to MPI libraries
348        -mpi=PATH | --mpi=PATH
349              Include MPI header files and link to MPI libraries using MPI_ROOT
350              set to PATH. i.e. Include files from $PATH/include, link to libraries
351              from $PATH/lib and use binaries from $PATH/bin.
352    
353        -bash NAME
354              Explicitly specify the Bourne or BASH shell to use
355    
356      While it is most often a single word, the "NAME" variables specified
357      above can in many cases be a space-delimited string such as:
358    
359        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
360        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
361        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
362    
363      which, depending upon your shell, may need to be single-quoted.
364    
365      For more detailed genmake documentation, please see:
366    
367        http://mitgcm.org/devel_HOWTO/
368    
369    EOF
370    
371      exit 1      exit 1
372  }  }
373    
374  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
375  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
376  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
377  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
378  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
379  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
380  #eh3 set LINK       = $FC  EOF
381  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
382  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
383  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
384  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
385  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
386  #eh3 set KFLAGS1    = (  )  
387  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
388  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
389  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
390  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
391  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
392        fi
393        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
394        RETVAL=$?
395        if test "x$RETVAL" != x0 ; then
396            FC_NAMEMANGLE=$default_nm
397            cat <<EOF>> genmake_warnings
398    
399    WARNING: The "nm" command failed.
400    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
401    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
402    EOF
403            return 1
404        fi
405        cat > genmake_tcomp.f <<EOF
406          subroutine tcall( string )
407          character*(*) string
408          call tsub( string )
409          end
410    EOF
411        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
412        RETVAL=$?
413        if test "x$RETVAL" != x0 ; then
414            FC_NAMEMANGLE=$default_nm
415            cat <<EOF>> genmake_warnings
416    
417    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
418    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
419    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
420    EOF
421            return 1
422        fi
423        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
424        RETVAL=$?
425        if test "x$RETVAL" != x0 ; then
426            FC_NAMEMANGLE=$default_nm
427            cat <<EOF>> genmake_warnings
428    
429    WARNING: The "nm" command failed.
430    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
431    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
432    EOF
433            return 1
434        fi
435    
436        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
437        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
438        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
439        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
440    
441        nmangle="X"
442        if test "x$c_a" != "x$f_a" ; then
443            comm="echo x$f_a | sed -e 's|x$c_a||'"
444            a=`eval $comm`
445            nmangle="$a ## $nmangle"
446        fi
447        if test "x$c_b" != "x$f_b" ; then
448            comm="echo x$f_b | sed -e 's|x$c_b||'"
449            b=`eval $comm`
450            nmangle="$nmangle ## $b"
451        fi
452    
453        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
454    
455        #  cleanup the testing files
456        rm -f genmake_tcomp.* genmake_test.*
457    }
458    
459    
460    check_HAVE_CLOC()  {
461        get_fortran_c_namemangling
462        cat <<EOF > genmake_tc_1.c
463    $FC_NAMEMANGLE
464    #include <stdio.h>
465    #include <stdlib.h>
466    #include <unistd.h>
467    #include <assert.h>
468    #include <sys/time.h>
469    void FC_NAMEMANGLE(cloc) ( double *curtim )
470    {
471     struct timeval tv1;
472     gettimeofday(&tv1 , (void *)NULL );
473     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
474     *curtim = *curtim/1.E6;
475    }
476    EOF
477        make genmake_tc_1.o >> genmake_tc.log 2>&1
478        RET_C=$?
479        cat <<EOF > genmake_tc_2.f
480          program hello
481          Real*8 wtime
482          external cloc
483          call cloc(wtime)
484          print *," HELLO WORLD", wtime
485          end program hello
486    EOF
487        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
488        RET_F=$?
489        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
490        RETVAL=$?
491        if test "x$RETVAL" = x0 ; then
492            HAVE_CLOC=t
493            DEFINES="$DEFINES -DHAVE_CLOC"
494        fi
495        rm -f genmake_tc*
496    }
497    
498    
499    check_netcdf_libs()  {
500        cat <<EOF > genmake_tnc.F
501          program fgennc
502    #include "netcdf.inc"
503          integer iret, ncid, xid
504          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
505          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
506          iret = nf_def_dim(ncid, 'X', 11, xid)
507          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
508          iret = nf_close(ncid)
509          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
510          end
511    EOF
512        $CPP genmake_tnc.F > genmake_tnc.f  \
513            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
514        RET_COMPILE=$?
515        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
516        RETVAL=$?
517        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
518            HAVE_NETCDF=t
519        else
520            # try again with "-lnetcdf" added to the libs
521            $CPP genmake_tnc.F > genmake_tnc.f  \
522                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
523                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
524            RET_COMPILE=$?
525            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
526            RETVAL=$?
527            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
528                LIBS="$LIBS -lnetcdf"
529                HAVE_NETCDF=t
530            else
531                cat genmake_tnc.log >> genmake_warnings
532            fi
533        fi
534        rm -f genmake_tnc*
535    }
536    
537    
538    
539    ###############################################################################
540    #   Sequential part of script starts here
541    ###############################################################################
542    
543  #  Set defaults here  #  Set defaults here
544  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 229  LN= Line 548  LN=
548  S64=  S64=
549  KPP=  KPP=
550  FC=  FC=
551    CPP=
552  LINK=  LINK=
553  DEFINES="-DWORDLENGTH=4"  DEFINES=
554  PACKAGES=  PACKAGES=
555  ENABLE=  ENABLE=
556  DISABLE=  DISABLE=
# Line 246  FOPTIM= Line 566  FOPTIM=
566  CFLAGS=  CFLAGS=
567  KFLAGS1=  KFLAGS1=
568  KFLAGS2=  KFLAGS2=
569    #LDADD=
570  LIBS=  LIBS=
571  KPPFILES=  KPPFILES=
572  NOOPTFILES=  NOOPTFILES=
573  NOOPTFLAGS=  NOOPTFLAGS=
574    MPI=
575    MPIPATH=
576    
577    # DEFINES checked by test compilation
578    HAVE_SYSTEM=
579    HAVE_FDATE=
580    FC_NAMEMANGLE=
581    HAVE_CLOC=
582    HAVE_NETCDF=
583    
584  MODS=  MODS=
585  TOOLSDIR=  TOOLSDIR=
586  SOURCEDIRS=  SOURCEDIRS=
587  INCLUDEDIRS=  INCLUDEDIRS=
588    STANDARDDIRS="USE_THE_DEFAULT"
589    
590    G2ARGS=
591    BASH=
592  PWD=`pwd`  PWD=`pwd`
593  MAKE=make  MAKE=make
594    AWK=awk
595  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
596  THISCWD=`pwd`  THISCWD=`pwd`
597  THISDATE=`date`  THISDATE=`date`
# Line 265  MACHINE=`uname -a` Line 599  MACHINE=`uname -a`
599  EXECUTABLE=  EXECUTABLE=
600  EXEHOOK=  EXEHOOK=
601  EXEDIR=  EXEDIR=
602    PACKAGES_CONF=
603    IEEE=
604    if test "x$MITGCM_IEEE" != x ; then
605        IEEE=$MITGCM_IEEE
606    fi
607    
608    AUTODIFF_PKG_USED=f
609    AD_OPTFILE=
610    TAF=
611    AD_TAF_FLAGS=
612    FTL_TAF_FLAGS=
613    SVD_TAF_FLAGS=
614    TAF_EXTRA=
615    TAMC=
616    AD_TAMC_FLAGS=
617    FTL_TAF_FLAGS=
618    SVD_TAMC_FLAGS=
619    TAMC_EXTRA=
620    
621    
622  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
623  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
624  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
625    
626  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
627  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
628  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
629  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
630  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
631    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
632    
633  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
634    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
635    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
636    gm_s12="TAF_EXTRA TAMC_EXTRA"
637    
638    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
639    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
640    
641    cat <<EOF
642    
643    GENMAKE :
644    
645    A program for GENerating MAKEfiles for the MITgcm project.  For a
646    quick list of options, use "genmake -h" or for more detail see:
647    
648      http://mitgcm.org/devel_HOWTO/
649    
650    EOF
651    
 echo  
652  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
653  gm_local="./gm_local"  gm_local="genmake_local"
654  echo -n "  getting local config information:  "  for i in . $MODS ; do
655        if test -r $i/$gm_local ; then
656            . $i/$gm_local
657            break
658        fi
659    done
660    printf "  getting local config information:  "
661  if test -e $gm_local ; then  if test -e $gm_local ; then
662      echo "using $gm_local"      echo "using $gm_local"
663      source $gm_local      . $gm_local
664      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
665      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
666  else  else
# Line 303  fi Line 678  fi
678  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
679  #done  #done
680  #parse_options  #parse_options
   
681  ac_prev=  ac_prev=
682  for ac_option ; do  for ac_option ; do
683    
684        G2ARGS="$G2ARGS \"$ac_option\""
685    
686      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
687      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
688          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 328  for ac_option ; do Line 704  for ac_option ; do
704          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
705              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
706                    
707            -adoptfile | --adoptfile | -adof | --adof)
708                ac_prev=AD_OPTFILE ;;
709            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
710                AD_OPTFILE=$ac_optarg ;;
711            
712          -pdepend | --pdepend)          -pdepend | --pdepend)
713              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
714          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 343  for ac_option ; do Line 724  for ac_option ; do
724          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
725              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
726                    
727            -bash | --bash)
728                ac_prev=BASH ;;
729            -bash=* | --bash=*)
730                BASH=$ac_optarg ;;
731            
732            -makedepend | --makedepend | -md | --md)
733                ac_prev=MAKEDEPEND ;;
734            -makedepend=* | --makedepend=* | -md=* | --md=*)
735                MAKEDEPEND=$ac_optarg ;;
736            
737          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
738              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
739          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
740              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
741                    
742          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
743              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
744          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
745              PLATFORM=$ac_optarg ;;              echo
746                usage
747                ;;
748                    
749          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
750              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 373  for ac_option ; do Line 766  for ac_option ; do
766          -enable=* | --enable=*)          -enable=* | --enable=*)
767              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
768                    
769          -noopt | --noopt)          -standarddirs | --standarddirs)
770              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
771          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
772              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
773            
774  #           -cpp | --cpp)  #           -cpp | --cpp)
775  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
776  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 389  for ac_option ; do Line 782  for ac_option ; do
782              FC=$ac_optarg ;;              FC=$ac_optarg ;;
783                    
784          -ieee | --ieee)          -ieee | --ieee)
785              IEEE=1 ;;              IEEE=true ;;
786          -noieee | --noieee)          -noieee | --noieee)
787              IEEE=0 ;;              IEEE= ;;
788            
789          -mpi | --mpi)          -mpi | --mpi)
790              MPI=1 ;;              MPI=true ;;
791          -nompi | --nompi)          -mpi=* | --mpi=*)
792              MPI=0 ;;              MPIPATH=$ac_optarg
793                        MPI=true ;;
794          -jam | --jam)          
795              JAM=1 ;;  #       -jam | --jam)
796          -nojam | --nojam)  #           JAM=1 ;;
797              JAM=0 ;;  #       -nojam | --nojam)
798    #           JAM=0 ;;
799                    
800          -ds | --ds)          -ds | --ds)
801              DUMPSTATE=t ;;              DUMPSTATE=t ;;
802                    
803            -taf_extra | --taf_extra)
804                ac_prev=TAF_EXTRA ;;
805            -taf_extra=* | --taf_extra=*)
806                TAF_EXTRA=$ac_optarg ;;
807    
808            -tamc_extra | --tamc_extra)
809                ac_prev=TAMC_EXTRA ;;
810            -tamc_extra=* | --tamc_extra=*)
811                TAMC_EXTRA=$ac_optarg ;;
812    
813          -*)          -*)
814              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
815              usage              usage
# Line 420  for ac_option ; do Line 824  for ac_option ; do
824            
825  done  done
826    
827    if test -f ./.genmakerc ; then
828        echo
829        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
830        echo "  file.  This file format is no longer supported.  Please see:"
831        echo
832        echo "    http://mitgcm.org/devel_HOWTO/"
833        echo
834        echo "  for directions on how to setup and use the new \"genmake2\" input"
835        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
836        echo
837    fi
838    
839  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
840      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
841          ROOTDIR=".."          ROOTDIR=".."
# Line 427  if test "x${ROOTDIR}" = x ; then Line 843  if test "x${ROOTDIR}" = x ; then
843          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
844              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
845                  ROOTDIR=$d                  ROOTDIR=$d
846                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
847                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
848                  break                  break
849              fi              fi
# Line 458  fi Line 874  fi
874  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
875      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
876          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
877          source "$OPTFILE"          . "$OPTFILE"
878          RETVAL=$?          RETVAL=$?
879          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
880              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
881              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
882              exit 1              exit 1
883          fi          fi
884          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
885              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
886          fi          fi
887      else      else
888          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 474  if test "x$OPTFILE" != xNONE ; then Line 890  if test "x$OPTFILE" != xNONE ; then
890      fi      fi
891  fi  fi
892    
893  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
894  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
895        if test "x$MITGCM_AD_OF" = x ; then
896            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
897        else
898            AD_OPTFILE=$MITGCM_AD_OF
899        fi
900    fi
901    if test "x${AD_OPTFILE}" != xNONE ; then
902        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
903            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
904            . "$AD_OPTFILE"
905            RETVAL=$?
906            if test "x$RETVAL" != x0 ; then
907                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
908                echo "--please check that variable syntax is bash-compatible"
909                exit 1
910            fi
911            if test "x$DUMPSTATE" != xf ; then
912                cp -f $AD_OPTFILE "genmake_ad_optfile"
913            fi
914        else
915            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
916            exit 1
917        fi
918    fi
919    
920    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
921    #  either set defaults or complain and abort!
922    if test ! "x$BASH" = x ; then
923        # add a trailing space so that it works within the Makefile syntax (see below)
924        BASH="$BASH "
925    fi
926  if test "x$FC" = x ; then  if test "x$FC" = x ; then
927      cat <<EOF 1>&2      cat <<EOF 1>&2
928    
929  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
930    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
931    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
932    3) the "./gm_local" file    3) the "./genmake_local" file
933  EOF  EOF
934      exit 1      exit 1
935  fi  fi
936  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
937      LINK=$FC      LINK=$FC
938  fi  fi
939    if test "x$MAKE" = x ; then
940        MAKE="make"
941    fi
942  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
943      CPP="cpp"      CPP=cpp
944  fi  fi
945  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
946    #  The following an ugly little hack to check for $CPP in /lib/ and it
947    #  should eventually be replaced with a more general function that
948    #  searches a combo of the user's path and a list of "usual suspects"
949    #  to find the correct location for binaries such as $CPP.
950    for i in " " "/lib/" ; do
951        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
952    done
953    #EH3 === UGLY ===
954    echo "#define A a" | $CPP > test_cpp 2>&1
955  RETVAL=$?  RETVAL=$?
956  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
957      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 500  if test "x$RETVAL" != x0 ; then Line 959  if test "x$RETVAL" != x0 ; then
959  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
960    
961    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
962    2) the "./gm_local" file    2) the "./genmake_local" file
963      3) with the CPP environment variable
964    
965  EOF  EOF
966      exit 1      exit 1
# Line 510  fi Line 970  fi
970  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
971      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
972  fi  fi
973    if test "x$LN" = x ; then
974        LN="ln -s"
975    fi
976    echo "test" > genmake_test_ln
977    $LN genmake_test_ln genmake_tlink
978    RETVAL=$?
979    if test "x$RETVAL" != x0 ; then
980        cat <<EOF 1>&2
981    
982    Error: The command "ln -s" failed -- please specify a working soft-link
983      command in the optfile.
984    
985    EOF
986        exit 1
987    fi
988    rm -f genmake_test_ln genmake_tlink
989    
990    if test ! "x$MPI" = x ; then
991          echo "  Turning on MPI cpp macros"
992          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
993    fi
994    
995    printf "\n===  Checking system libraries  ===\n"
996    printf "  Do we have the system() command using $FC...  "
997    cat > genmake_tcomp.f <<EOF
998          program hello
999          call system('echo hi')
1000          end
1001    EOF
1002    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1003    RETVAL=$?
1004    if test "x$RETVAL" = x0 ; then
1005        HAVE_SYSTEM=t
1006        DEFINES="$DEFINES -DHAVE_SYSTEM"
1007        echo "yes"
1008    else
1009        HAVE_SYSTEM=
1010        echo "no"
1011    fi
1012    rm -f genmake_tcomp*
1013    
1014    printf "  Do we have the fdate() command using $FC...  "
1015    cat > genmake_tcomp.f <<EOF
1016          program hello
1017          CHARACTER(128) string
1018          string = ' '
1019          call fdate( string )
1020          print *, string
1021          end
1022    EOF
1023    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1024    RETVAL=$?
1025    if test "x$RETVAL" = x0 ; then
1026        HAVE_FDATE=t
1027        DEFINES="$DEFINES -DHAVE_FDATE"
1028        echo "yes"
1029    else
1030        HAVE_FDATE=
1031        echo "no"
1032    fi
1033    rm -f genmake_tcomp*
1034    
1035    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1036    check_HAVE_CLOC
1037    if test "x$HAVE_CLOC" != x ; then
1038        echo "yes"
1039    else
1040        echo "no"
1041    fi
1042    rm -f genmake_t*
1043    
1044    printf "  Can we create NetCDF-enabled binaries...  "
1045    check_netcdf_libs
1046    if test "x$HAVE_NETCDF" != x ; then
1047        echo "yes"
1048    else
1049        echo "no"
1050    fi
1051    
1052    
1053  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1054  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1055  for d in $MODS ; do  for d in $MODS ; do
1056      if test ! -d $d ; then      if test ! -d $d ; then
1057          echo          echo
1058          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1059          exit 1          exit 1
1060      else      else
1061          echo -n " $d"          printf " $d"
1062          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1063          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1064      fi      fi
# Line 549  if test "x${TOOLSDIR}" = x ; then Line 1088  if test "x${TOOLSDIR}" = x ; then
1088      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1089  fi  fi
1090  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1091      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1092      exit 1      exit 1
1093  fi  fi
1094  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1095      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1096  fi  fi
1097    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1098    
1099  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1100    
# Line 563  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1103  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1103  #  they appear as regular source code  #  they appear as regular source code
1104  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1105      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1106      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1107      RETVAL=$?      RETVAL=$?
1108      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1109          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1110      else      else
1111          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1112          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1113          exit 1          exit 1
1114      fi      fi
1115  fi  fi
1116    
1117    #same for exch2
1118    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1119        echo "  Making source files in exch2 from  templates"
1120        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1121        RETVAL=$?
1122        if test "x${RETVAL}" = x0 ; then
1123            rm -f make_exch2.errors
1124        else
1125            echo "Error: problem encountered while building source files in exch2:"
1126            cat make_exch2.errors 1>&2
1127            exit 1
1128        fi
1129    fi
1130    
1131  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1132  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1133      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 593  echo "  getting package dependency info Line 1147  echo "  getting package dependency info
1147  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1148  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1149  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1150      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1151      > ./.pd_tmp      > ./.pd_tmp
1152  RETVAL=$?  RETVAL=$?
1153  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1154      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1155      exit 1      exit 1
1156  fi  fi
1157  source ./.pd_tmp  . ./.pd_tmp
1158  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1159    
1160  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1161    #  file should eventually be added so that, for convenience, one can
1162    #  specify groups of packages using names like "ocean" and "atmosphere".
1163    echo "  checking default package list:  "
1164    if test "x${PDEFAULT}" = x ; then
1165        for i in "." $MODS ; do
1166            if test -r $i"/packages.conf" ; then
1167                    PDEFAULT=$i"/packages.conf"
1168                    break
1169            fi
1170        done
1171    fi
1172  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1173      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1174  fi  fi
1175  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1176      echo "default packages file disabled"      echo "    default packages file disabled"
1177  else  else
1178      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1179          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1180      else      else
1181          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1182          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1183          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1184          RETVAL=$?          RETVAL=$?
1185          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1186              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1187              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1188              exit 1              exit 1
1189          fi          fi
1190          for i in $def ; do          for i in $def ; do
1191              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1192          done          done
1193          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1194            while ! expand_pkg_groups; do echo > /dev/null; done
1195            echo "    after group expansion packages are:  $PACKAGES"
1196      fi      fi
1197  fi  fi
1198    
1199  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1200    for i in $PACKAGES ; do
1201        echo $i >> ./.tmp_pack
1202    done
1203    for i in `grep  "-" ./.tmp_pack` ; do
1204        j=`echo $i | sed 's/[-]//'`
1205        DISABLE="$DISABLE $j"
1206    done
1207  pack=  pack=
1208  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1209      addit="t"      addit="t"
# Line 645  for p in $PACKAGES ; do Line 1218  for p in $PACKAGES ; do
1218  done  done
1219  PACKAGES="$pack"  PACKAGES="$pack"
1220  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1221  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1222  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1223    # Test if each explicitly referenced package exists
1224  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1225      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1226        if test ! -d "$ROOTDIR/pkg/$j" ; then
1227          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1228          exit 1          exit 1
1229      fi      fi
1230      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1231  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1232  PACKAGES=  PACKAGES=
1233  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1234      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1235  done  done
1236    rm -f ./.tmp_pack
1237  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1238    
1239  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 736  for i in $PACKAGES ; do Line 1310  for i in $PACKAGES ; do
1310      if test -d $adr ; then      if test -d $adr ; then
1311          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1312          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1313            if test "x$i" = xautodiff ; then
1314                AUTODIFF_PKG_USED=t
1315            fi
1316      else      else
1317          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1318          exit 1          exit 1
1319      fi      fi
1320  done  done
1321    
1322  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1323  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1324  #  RETVAL=$?
1325  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1326  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1327  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1328  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1329  # i=0          rm -f make_mnc.errors
1330  # while test $i -lt "${#pkrm[@]}" ; do      else
1331  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1332  #     RETVAL=$?          cat make_mnc.errors 1>&2
1333  #     if test "x$RETVAL" = x1 ; then          exit 1
1334  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1335  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1336  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1337    
1338  echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  WARNING: the "mnc" package has been enabled but tests failed to
1339  CPP_OPTIONS=    compile and/or execute NetCDF applications.  Please check that:
1340  spaths=". $SOURCEDIRS"  
1341  for i in $spaths ; do    1) NetCDF is installed for your compiler and
1342      try="$i/CPP_OPTIONS.h"    2) the LIBS variable (within the 'optfile") specifies the correct
1343      #  echo -n "    trying $try : "         NetCDF library to link against.
1344      if test -f $try -a -r $try ; then    
1345          echo "    found CPP_OPTIONS=\"$try\""  EOF
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
1346      fi      fi
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
1347  fi  fi
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1348    
1349  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1350  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1351  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1352  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1353  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1354  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1355  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1356  all_pack=  all_pack=
1357    DISABLED_PACKAGES=
1358  for n in $names ; do  for n in $names ; do
1359      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1360          has_pack="f"          has_pack="f"
# Line 813  for n in $names ; do Line 1365  for n in $names ; do
1365              fi              fi
1366          done          done
1367          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1368              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1369              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1370          fi          fi
1371      fi      fi
1372  done  done
1373  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1374  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1375      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1376      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1377    #eh3 DEFINES="$DEFINES -D$def"
1378    
1379  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1380      case $i in      case $i in
1381          aim_v23)          aim_v23)
1382              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1383                echo "Warning: ALLOW_AIM is set to enable aim_v23."
1384              ;;              ;;
1385      esac      esac
1386  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1387    
1388  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1389    
1390  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1391  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1392  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1393  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
1394      adr="$ROOTDIR/$d/src"  fi
1395      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
1396          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
1397          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
1398          exit 1          if test ! -d $adr ; then
1399      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1400          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1401      fi              exit 1
1402      adr="$ROOTDIR/$d/inc"          else
1403      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
1404          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
1405          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
1406          exit 1          if test ! -d $adr ; then
1407      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1408          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1409                exit 1
1410            else
1411                INCLUDEDIRS="$INCLUDEDIRS $adr"
1412            fi
1413        done
1414    fi
1415    
1416    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1417    echo "    of \"#define \"-type statements that are no longer allowed:"
1418    CPP_OPTIONS=
1419    CPP_EEOPTIONS=
1420    spaths=". $INCLUDEDIRS"
1421    names=`ls -1 "$ROOTDIR/pkg"`
1422    for i in $spaths ; do
1423        try="$i/CPP_OPTIONS.h"
1424        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
1425            echo "    found CPP_OPTIONS=\"$try\""
1426            CPP_OPTIONS="$try"
1427            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1428            for n in $names ; do
1429                test_for_package_in_cpp_options $CPP_OPTIONS $n
1430            done
1431        fi
1432        try="$i/CPP_EEOPTIONS.h"
1433        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1434            echo "    found CPP_EEOPTIONS=\"$try\""
1435            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1436    #**** not yet enabled ****
1437    #        test_for_mpi_in_cpp_eeoptions $try
1438    #**** not yet enabled ****
1439            CPP_EEOPTIONS="$try"
1440      fi      fi
1441  done  done
1442    if test "x$CPP_OPTIONS" = x ; then
1443        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1444        exit 1
1445    fi
1446    
1447    #  Here, we build the list of files to be "run through" the adjoint
1448    #  compiler.
1449    if test -f ./ad_files ; then
1450        rm -f ./ad_files
1451    fi
1452    echo "  Creating the list of files for the adjoint compiler."
1453    for i in $SOURCEDIRS ; do
1454        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1455        for j in $list_files ; do
1456            cat $i/$j >> ad_files
1457        done
1458    done
1459    
1460    
1461  echo  echo
1462  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1463  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1464  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1465      if test -d $i ; then      if ! test -d $i ; then
1466          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1467      else  #   else
1468          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1469      fi      fi
1470  done  done
# Line 894  rm -rf .links.tmp Line 1474  rm -rf .links.tmp
1474  mkdir .links.tmp  mkdir .links.tmp
1475  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1476  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1477  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1478  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1479  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1480  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1481    printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1482  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1483  for d in $alldirs ; do  for d in $alldirs ; do
1484      deplist=      deplist=
1485      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1486      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1487      for sf in $sfiles ; do      for sf in $sfiles ; do
1488          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1489              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1490                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1491                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1492                  deplist="$deplist $sf"                          ;;
1493                      ./AD_CONFIG.h)
1494                            ;;
1495                      ./FC_NAMEMANGLE.h)
1496                            ;;
1497                      *)
1498                            touch .links.tmp/$sf
1499                            deplist="$deplist $sf"
1500                            ;;
1501                    esac
1502                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1503                  case $extn in                  case $extn in
1504                      F)                      F)
1505                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1506                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1507                          ;;                          ;;
1508                      F90)                      F90)
1509                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1510                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1511                          ;;                          ;;
1512                      c)                      c)
1513                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1514                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1515                          ;;                          ;;
1516                      h)                      h)
1517                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1518                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1519                            ;;
1520                        flow)
1521                            echo    " \\"  >> ad_flow_files.inc
1522                            printf " $sf" >> ad_flow_files.inc
1523                          ;;                          ;;
1524                  esac                  esac
1525              fi              fi
# Line 942  echo "" >> srclist.inc Line 1537  echo "" >> srclist.inc
1537  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1538  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1539  echo "" >> hlist.inc  echo "" >> hlist.inc
1540    echo "" >> ad_flow_files.inc
1541    
1542  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1543      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 952  echo "#    $MACHINE" >> $MAKEFILE Line 1548  echo "#    $MACHINE" >> $MAKEFILE
1548  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1549  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1550  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1551  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1552  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1553  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1554    
1555    EXE_AD=$EXECUTABLE"_ad"
1556    EXE_FTL=$EXECUTABLE"_ftl"
1557    EXE_SVD=$EXECUTABLE"_svd"
1558    
1559  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1560    #
1561    # OPTFILE="$OPTFILE"
1562  #  #
1563  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1564  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 983  EXEDIR      = ${EXEDIR} Line 1586  EXEDIR      = ${EXEDIR}
1586  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1587  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1588    
1589    #eh3  new defines for the adjoint work
1590    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1591    EXE_AD      = ${EXE_AD}
1592    EXE_FTL     = ${EXE_FTL}
1593    EXE_SVD     = ${EXE_SVD}
1594    
1595    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1596    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1597    
1598    # These files are created by Makefile
1599    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1600    
1601  EOF  EOF
1602    
1603  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1001  FC = ${FC} Line 1616  FC = ${FC}
1616  # Fortran compiler  # Fortran compiler
1617  F90C = ${F90C}  F90C = ${F90C}
1618  # Link editor  # Link editor
1619  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1620    
1621  # Defines for CPP  # Defines for CPP
1622  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1028  MAKEFILE=${MAKEFILE} Line 1643  MAKEFILE=${MAKEFILE}
1643    
1644  EOF  EOF
1645    
1646  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1647  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1648  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1649  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1650    cat ad_flow_files.inc >> $MAKEFILE
1651    echo               >> $MAKEFILE
1652  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1653  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1654  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1655    
1656  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1657    rm -f ad_flow_files.inc
1658    
1659  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1660    
# Line 1044  cat >>$MAKEFILE <<EOF Line 1662  cat >>$MAKEFILE <<EOF
1662  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1663    
1664  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1665  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1666            @echo Creating \$@ ...
1667          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1668  depend:  depend:
1669          @make links          @make links
1670          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1671          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1672            -rm -f makedepend.out
1673    
1674  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1675    
1676  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1677    
# Line 1060  output.txt: \$(EXECUTABLE) Line 1680  output.txt: \$(EXECUTABLE)
1680          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1681    
1682  clean:  clean:
1683          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1684  Clean:  Clean:
1685          @make clean          @make clean
1686          @make cleanlinks          @make cleanlinks
1687          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1688            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1689  CLEAN:  CLEAN:
1690          @make Clean          @make Clean
1691          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1692          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1693          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1694          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1695    
1696    #eh3 Makefile: makefile
1697  makefile:  makefile:
1698          ${0} $@          $THIS_SCRIPT $G2ARGS
1699  cleanlinks:  cleanlinks:
1700          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1701    
1702    # Special targets ($SPECIAL_FILES) which are create by make
1703    ${PACKAGES_DOT_H}:
1704            @echo Creating \$@ ...
1705            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1706    AD_CONFIG.h:
1707            @echo Creating \$@ ...
1708            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1709    FC_NAMEMANGLE.h:
1710            @echo Creating \$@ ...
1711            echo "$FC_NAMEMANGLE" > \$@
1712    
1713  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1714  .F.f:  .F.f:
1715          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1095  cleanlinks: Line 1728  cleanlinks:
1728  .p.f:  .p.f:
1729          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1730    
1731    #=========================================
1732    #===  Automatic Differentiation Rules  ===
1733    
1734    TAMC           = ${TAMC}
1735    TAF            = ${TAF}
1736    
1737    TAF_EXTRA      = ${TAF_EXTRA}
1738    TAMC_EXTRA     = ${TAMC_EXTRA}
1739    
1740    EOF
1741    
1742    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1743    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1744    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1745    for i in $ad_vars ; do
1746        name=$i
1747        t1="t2=\$"`echo $i`
1748        eval $t1
1749        printf "%-20s = " $name >> $MAKEFILE
1750        echo $t2 >> $MAKEFILE
1751    done
1752    
1753    echo "  Add the source list for AD code generation"
1754    echo >> $MAKEFILE
1755    printf "AD_FILES = " >> $MAKEFILE
1756    AD_FILES=`cat ad_files`
1757    for i in $AD_FILES ; do
1758        echo    " \\" >> $MAKEFILE
1759        printf " $i" >> $MAKEFILE
1760    done
1761    echo >> $MAKEFILE
1762    rm -f ad_files
1763    
1764    cat >>$MAKEFILE <<EOF
1765    
1766    # ... AD ...
1767    adall: ad_taf
1768    adtaf: ad_taf_output.f
1769    adtamc: ad_tamc_output.f
1770    
1771    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1772            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1773            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1774            -rm -f ad_config.template
1775            @make \$(F77FILES)
1776            @make \$(AD_FLOW_FILES)
1777            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1778    
1779    ad_taf_output.f: ad_input_code.f
1780            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1781            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1782    
1783    adtafonly:
1784            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1785            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1786    
1787    ad_taf: ad_taf_output.o \$(OBJFILES)
1788            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1789    
1790    ad_tamc_output.f: ad_input_code.f
1791            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1792            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1793    
1794    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1795            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1796    
1797    
1798    # ... FTL ...
1799    ftlall: ftl_taf
1800    ftltaf: ftl_taf_output.f
1801    ftltamc: ftl_tamc_output.f
1802    
1803    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1804            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1805            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1806            -rm -f ftl_config.template
1807            @make \$(F77FILES)
1808            @make \$(AD_FLOW_FILES)
1809            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1810    
1811    ftl_taf_output.f: ftl_input_code.f
1812            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1813            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1814    
1815    ftltafonly:
1816            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1817            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1818    
1819    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1820            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1821    
1822    ftl_tamc_output.f: ftl_input_code.f
1823            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1824            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1825    
1826    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1827            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1828    
1829    
1830    # ... SVD ...
1831    svdtaf: ad_taf_output.f ftl_taf_output.f
1832    svdall: svd_taf
1833    
1834    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1835            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1836    
1837    
1838    #=========================================
1839    
1840  EOF  EOF
1841    
1842  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1131  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1873  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1873    
1874  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1875    
1876    # Create special header files
1877    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1878    if test ! -f $PACKAGES_DOT_H ; then
1879        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1880    else
1881        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1882        RETVAL=$?
1883        if test "x$RETVAL" = x0 ; then
1884            rm -f $PACKAGES_DOT_H".tmp"
1885        else
1886            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1887            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1888        fi
1889    fi
1890    if test ! -f AD_CONFIG.h ; then
1891        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1892    fi
1893    
1894    
1895  #  Write the "state" for future records  #  Write the "state" for future records
1896  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1897      echo -n "" > gm_state      printf "" > genmake_state
1898      for i in $gm_state ; do      for i in $gm_state ; do
1899          t1="t2=\$$i"          t1="t2=\$$i"
1900          eval $t1          eval $t1
1901          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
1902      done      done
1903  fi  fi

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