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revision 1.11 by edhill, Mon Sep 29 16:15:23 2003 UTC revision 1.37 by heimbach, Fri Nov 14 05:25:46 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #!/bin/sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
17        RETVAL=$?
18        if test "x${RETVAL}" = x0 ; then
19            echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"
20            exit 99
21        fi
22        grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
23        RETVAL=$?
24        if test "x${RETVAL}" = x0 ; then
25            echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"
26            exit 99
27        fi
28        grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
29        RETVAL=$?
30        if test "x${RETVAL}" = x0 ; then
31            echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"
32            exit 99
33        fi
34        grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
35        RETVAL=$?
36        if test "x${RETVAL}" = x0 ; then
37            echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"
38            exit 99
39       fi
40    }
41    
42    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
43    # the package list.
44    expand_pkg_groups() {
45        new_packages=
46        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
47        if test -r $PKG_GROUPS ; then
48            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
49            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
50            matched=0
51            for i in $PACKAGES ; do
52                line=`grep "^ *$i" ./p2.tmp`
53                RETVAL=$?
54                if test "x$RETVAL" = x0 ; then
55                    matched=1
56                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
57                    echo "    replacing \"$i\" with: $replace"
58                    new_packages="$new_packages $replace"
59                else
60                    new_packages="$new_packages $i"
61                fi
62            done
63            PACKAGES=$new_packages
64            rm -f ./p[1,2].tmp
65        else
66            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
67        fi
68    }
69    
70  # Guess possible config options for this host  # Guess possible config options for this host
71  find_possible_configs()  {  find_possible_configs()  {
72    
73      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
74      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
75      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
76        PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
77      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
78      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
79  #     if test "x$OFLIST" = x ; then  #     if test "x$OFLIST" = x ; then
# Line 45  find_possible_configs()  { Line 104  find_possible_configs()  {
104          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
105      fi      fi
106    
107        # makedepend is not always available
108        if test "x${MAKEDEPEND}" = x ; then
109          which makedepend >& /dev/null
110          RETVAL=$?
111          if test "x${RETVAL}" = x1 ; then
112             echo "    makedepend was not found. Using xmakedpend instead."
113             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
114          fi
115        fi
116    
117      # look for possible fortran compilers      # look for possible fortran compilers
118      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
119      p_FC=      p_FC=
120      for c in $tmp ; do      for c in $tmp ; do
121          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 63  EOF Line 132  EOF
132              p_FC="$p_FC $c"              p_FC="$p_FC $c"
133          fi          fi
134      done      done
135        rm -f ./hello.f ./hello
136      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
137          cat 1>&2 <<EOF          cat 1>&2 <<EOF
138    
# Line 78  EOF Line 148  EOF
148          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
149          echo "   "$p_FC          echo "   "$p_FC
150          if test "x$FC" = x ; then          if test "x$FC" = x ; then
151              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
152          fi          fi
153      fi      fi
154    
# Line 144  get_pdepend_list()  { Line 214  get_pdepend_list()  {
214      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
215      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
216      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
217          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
218          > ./.pd_tmp          > ./.pd_tmp
219      source ./.pd_tmp      . ./.pd_tmp
220      rm -f ./.pd_tmp      rm -f ./.pd_tmp
221    
222      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 181  usage()  { Line 251  usage()  {
251      echo "      -disable=NAME | --disable=NAME"      echo "      -disable=NAME | --disable=NAME"
252      echo "    -enable NAME | --enable NAME"      echo "    -enable NAME | --enable NAME"
253      echo "      -enable=NAME | --enable=NAME"      echo "      -enable=NAME | --enable=NAME"
254        echo "    -standarddirs NAME | --standarddirs NAME"
255        echo "      -standarddirs=NAME | --standarddirs=NAME"
256      echo "    -noopt NAME | --noopt NAME"      echo "    -noopt NAME | --noopt NAME"
257      echo "      -noopt=NAME | --noopt=NAME"      echo "      -noopt=NAME | --noopt=NAME"
258  #    echo "    -cpp NAME | --cpp NAME"  #    echo "    -cpp NAME | --cpp NAME"
# Line 202  usage()  { Line 274  usage()  {
274      exit 1      exit 1
275  }  }
276    
277  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
278  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
279  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
280  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
281  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
282  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
283  #eh3 set LINK       = $FC  EOF
284  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o > genmake_test.log 2>&1
285  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
286  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
287  #eh3 set FOPTIM     = (  )          cat genmake_test.log >> genmake_errors
288  #eh3 set CFLAGS     = (  )          FC_NAMEMANGLE=$default_nm
289  #eh3 set KFLAGS1    = (  )          echo
290  #eh3 set KFLAGS2    = (  )          echo "WARNING: C test compile fails -- please see \"genmake_errors\""
291  #eh3 set LIBS       = (  )          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"
292  #eh3 set KPPFILES   = (  )          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."
293  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          return 1
294  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      fi
295        c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`
296        RETVAL=$?
297        if test "x$RETVAL" != x0 ; then
298            FC_NAMEMANGLE=$default_nm
299            echo
300            echo "WARNING: The \"nm\" command failed."
301            echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"
302            echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."
303            return 1
304        fi
305        cat > genmake_tcomp.f <<EOF
306          subroutine tcall( string )
307          character*(*) string
308          call tsub( string )
309          end
310    EOF
311        $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1
312        RETVAL=$?
313        if test "x$RETVAL" != x0 ; then
314            cat genmake_tcomp.log >> genmake_errors
315            FC_NAMEMANGLE=$default_nm
316            echo
317            echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""
318            echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"
319            echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."
320            return 1
321        fi
322        f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`
323        RETVAL=$?
324        if test "x$RETVAL" != x0 ; then
325            FC_NAMEMANGLE=$default_nm
326            echo
327            echo "WARNING: The \"nm\" command failed."
328            echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"
329            echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."
330            return 1
331        fi
332    
333        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
334        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
335        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
336        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
337    
338        nmangle="X"
339        if test "x$c_a" != "x$f_a" ; then
340            comm="echo x$f_a | sed -e 's|x$c_a||'"
341            a=`eval $comm`
342            nmangle="$a ## $nmangle"
343        fi
344        if test "x$c_b" != "x$f_b" ; then
345            comm="echo x$f_b | sed -e 's|x$c_b||'"
346            b=`eval $comm`
347            nmangle="$nmangle ## $b"
348        fi
349    
350        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
351    
352        #  cleanup the testing files
353        rm -f genmake_tcomp.* genmake_test.*
354    }
355    
356  #  Set defaults here  #  Set defaults here
357  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 230  S64= Line 362  S64=
362  KPP=  KPP=
363  FC=  FC=
364  LINK=  LINK=
365  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
366    DEFINES=
367  PACKAGES=  PACKAGES=
368  ENABLE=  ENABLE=
369  DISABLE=  DISABLE=
# Line 251  KPPFILES= Line 384  KPPFILES=
384  NOOPTFILES=  NOOPTFILES=
385  NOOPTFLAGS=  NOOPTFLAGS=
386    
387    # DEFINES checked by test compilation
388    HAVE_SYSTEM=
389    HAVE_FDATE=
390    FC_NAMEMANGLE=
391    
392  MODS=  MODS=
393  TOOLSDIR=  TOOLSDIR=
394  SOURCEDIRS=  SOURCEDIRS=
395  INCLUDEDIRS=  INCLUDEDIRS=
396    STANDARDDIRS=
397    
398  PWD=`pwd`  PWD=`pwd`
399  MAKE=make  MAKE=make
400    AWK=awk
401  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
402  THISCWD=`pwd`  THISCWD=`pwd`
403  THISDATE=`date`  THISDATE=`date`
# Line 265  MACHINE=`uname -a` Line 405  MACHINE=`uname -a`
405  EXECUTABLE=  EXECUTABLE=
406  EXEHOOK=  EXEHOOK=
407  EXEDIR=  EXEDIR=
408    PACKAGES_CONF=
409    IEEE=
410    if test "x$MITGCM_IEEE" != x ; then
411        IEEE=$MITGCM_IEEE
412    fi
413    
414    AUTODIFF_PKG_USED=f
415    AD_OPTFILE=
416    TAF=
417    AD_TAF_FLAGS=
418    FTL_TAF_FLAGS=
419    SVD_TAF_FLAGS=
420    TAF_EXTRA=
421    TAMC=
422    AD_TAMC_FLAGS=
423    FTL_TAF_FLAGS=
424    SVD_TAMC_FLAGS=
425    TAMC_EXTRA=
426    
427    
428  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
429  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"
430  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
431    
432  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
433  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
434  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
435  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
436  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
437    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
438    
439    #  The following are all related to adjoint/tangent-linear stuff
440    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
441    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
442    gm_s12="TAF_EXTRA TAMC_EXTRA"
443    
444  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
445    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
446    
447    
448  echo  echo
449  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
450  gm_local="./gm_local"  gm_local="genmake_local"
451    for i in . $MODS ; do
452        if test -r $i/$gm_local ; then
453            . $i/$gm_local
454            break
455        fi
456    done
457  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
458  if test -e $gm_local ; then  if test -e $gm_local ; then
459      echo "using $gm_local"      echo "using $gm_local"
460      source $gm_local      . $gm_local
461      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
462      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
463  else  else
# Line 303  fi Line 475  fi
475  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
476  #done  #done
477  #parse_options  #parse_options
   
478  ac_prev=  ac_prev=
479  for ac_option ; do  for ac_option ; do
480    
# Line 328  for ac_option ; do Line 499  for ac_option ; do
499          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
500              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
501                    
502            -adoptfile | --adoptfile | -ad | --ad)
503                ac_prev=AD_OPTFILE ;;
504            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
505                AD_OPTFILE=$ac_optarg ;;
506            
507          -pdepend | --pdepend)          -pdepend | --pdepend)
508              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
509          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 373  for ac_option ; do Line 549  for ac_option ; do
549          -enable=* | --enable=*)          -enable=* | --enable=*)
550              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
551                    
552            -standarddirs | --standarddirs)
553                ac_prev=STANDARDDIRS ;;
554            -standarddirs=* | --standarddirs=*)
555                STANDARDDIRS=$ac_optarg ;;
556    
557          -noopt | --noopt)          -noopt | --noopt)
558              ac_prev=NOOPT ;;              ac_prev=NOOPT ;;
559          -noopt=* | --noopt=*)          -noopt=* | --noopt=*)
# Line 389  for ac_option ; do Line 570  for ac_option ; do
570              FC=$ac_optarg ;;              FC=$ac_optarg ;;
571                    
572          -ieee | --ieee)          -ieee | --ieee)
573              IEEE=1 ;;              IEEE=true ;;
574          -noieee | --noieee)          -noieee | --noieee)
575              IEEE=0 ;;              IEEE= ;;
576                    
577          -mpi | --mpi)          -mpi | --mpi)
578              MPI=1 ;;              MPI=true ;;
579          -nompi | --nompi)          -nompi | --nompi)
580              MPI=0 ;;              MPI= ;;
581                    
582          -jam | --jam)          -jam | --jam)
583              JAM=1 ;;              JAM=1 ;;
# Line 406  for ac_option ; do Line 587  for ac_option ; do
587          -ds | --ds)          -ds | --ds)
588              DUMPSTATE=t ;;              DUMPSTATE=t ;;
589                    
590            -taf_extra | --taf_extra)
591                ac_prev=TAF_EXTRA ;;
592            -taf_extra=* | --taf_extra=*)
593                TAF_EXTRA=$ac_optarg ;;
594    
595            -tamc_extra | --tamc_extra)
596                ac_prev=TAMC_EXTRA ;;
597            -tamc_extra=* | --tamc_extra=*)
598                TAMC_EXTRA=$ac_optarg ;;
599    
600          -*)          -*)
601              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
602              usage              usage
# Line 420  for ac_option ; do Line 611  for ac_option ; do
611            
612  done  done
613    
614    if test -f ./.genmakerc ; then
615        echo
616        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
617        echo "  file.  This file format is no longer supported.  Please see:"
618        echo
619        echo "    http://mitgcm.org/devel_HOWTO/"
620        echo
621        echo "  for directions on how to setup and use the new \"genmake2\" input"
622        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
623        echo
624    fi
625    
626  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
627      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
628          ROOTDIR=".."          ROOTDIR=".."
# Line 458  fi Line 661  fi
661  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
662      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
663          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
664          source "$OPTFILE"          . "$OPTFILE"
665          RETVAL=$?          RETVAL=$?
666          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
667              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 466  if test "x$OPTFILE" != xNONE ; then Line 669  if test "x$OPTFILE" != xNONE ; then
669              exit 1              exit 1
670          fi          fi
671          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
672              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
673          fi          fi
674      else      else
675          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 474  if test "x$OPTFILE" != xNONE ; then Line 677  if test "x$OPTFILE" != xNONE ; then
677      fi      fi
678  fi  fi
679    
680  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
681  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
682        if test "x$MITGCM_AD_OF" = x ; then
683            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
684        else
685            AD_OPTFILE=$MITGCM_AD_OF
686        fi
687    fi
688    if test "x${AD_OPTFILE}" != xNONE ; then
689        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
690            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
691            . "$AD_OPTFILE"
692            RETVAL=$?
693            if test "x$RETVAL" != x0 ; then
694                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
695                echo "--please check that variable syntax is bash-compatible"
696                exit 1
697            fi
698            if test "x$DUMPSTATE" != xf ; then
699                cp -f $AD_OPTFILE "genmake_ad_optfile"
700            fi
701        else
702            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
703            exit 1
704        fi
705    fi
706    
707    #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,
708    #  complain and abort!
709  if test "x$FC" = x ; then  if test "x$FC" = x ; then
710      cat <<EOF 1>&2      cat <<EOF 1>&2
711    
712  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
713    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
714    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
715    3) the "./gm_local" file    3) the "./genmake_local" file
716  EOF  EOF
717      exit 1      exit 1
718  fi  fi
# Line 492  fi Line 722  fi
722  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
723      CPP="cpp"      CPP="cpp"
724  fi  fi
725  echo "#define A a" | cpp > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
726  RETVAL=$?  RETVAL=$?
727  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
728      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 500  if test "x$RETVAL" != x0 ; then Line 730  if test "x$RETVAL" != x0 ; then
730  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
731    
732    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
733    2) the "./gm_local" file    2) the "./genmake_local" file
734      3) with the CPP environment variable
735    
736  EOF  EOF
737      exit 1      exit 1
# Line 510  fi Line 741  fi
741  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
742      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
743  fi  fi
744    if test "x$LN" = x ; then
745        LN="ln -s"
746    fi
747    echo "test" > genmake_test_ln
748    $LN genmake_test_ln genmake_tlink
749    RETVAL=$?
750    if test "x$RETVAL" != x0 ; then
751        cat <<EOF 1>&2
752    
753    Error: The command "ln -s" failed -- please specify a working soft-link
754      command in the optfile.
755    
756    EOF
757        exit 1
758    fi
759    rm -f genmake_test_ln genmake_tlink
760    
761    printf "\n===  Checking system libraries  ===\n"
762    echo -n "  Do we have the system() command using $FC...  "
763    cat > genmake_tcomp.f <<EOF
764          program hello
765          call system('echo hi')
766          end
767    EOF
768    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
769    RETVAL=$?
770    if test "x$RETVAL" = x0 ; then
771        HAVE_SYSTEM=t
772        DEFINES="$DEFINES -DHAVE_SYSTEM"
773        echo "yes"
774    else
775        HAVE_SYSTEM=
776        echo "no"
777    fi
778    rm -f genmake_tcomp*
779    
780    echo -n "  Do we have the fdate() command using $FC...  "
781    cat > genmake_tcomp.f <<EOF
782          program hello
783          CHARACTER(128) string
784          string = ' '
785          call fdate( string )
786          print *, string
787          end
788    EOF
789    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
790    RETVAL=$?
791    if test "x$RETVAL" = x0 ; then
792        HAVE_FDATE=t
793        DEFINES="$DEFINES -DHAVE_FDATE"
794        echo "yes"
795    else
796        HAVE_FDATE=
797        echo "no"
798    fi
799    rm -f genmake_tcomp*
800    
801    echo "  The name mangling convention for $FC is...  "
802    #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"
803    if test "x$FC_NAMEMANGLE" = x ; then
804        get_fortran_c_namemangling
805    fi
806    echo "    '$FC_NAMEMANGLE'"
807    echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template
808    cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1
809    RETVAL=$?
810    if test "x$RETVAL" != x0 ; then
811        mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h
812    fi
813    
814    
815  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
816  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 563  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 864  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
864  #  they appear as regular source code  #  they appear as regular source code
865  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
866      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
867      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
868      RETVAL=$?      RETVAL=$?
869      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
870          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 593  echo "  getting package dependency info Line 894  echo "  getting package dependency info
894  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
895  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
896  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
897      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
898      > ./.pd_tmp      > ./.pd_tmp
899  RETVAL=$?  RETVAL=$?
900  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
901      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
902      exit 1      exit 1
903  fi  fi
904  source ./.pd_tmp  . ./.pd_tmp
905  rm -f ./.pd_tmp  rm -f ./.pd_tmp
906    
907    #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
908    #  file should eventually be added so that, for convenience, one can
909    #  specify groups of packages using names like "ocean" and "atmosphere".
910  echo  -n "  checking default package list:  "  echo  -n "  checking default package list:  "
911  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
912        for i in "." $MODS ; do
913            if test -r $i"/packages.conf" ; then
914                    PDEFAULT=$i"/packages.conf"
915                    break
916            fi
917        done
918    fi
919    if test "x${PDEFAULT}" = x ; then
920      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
921  fi  fi
922  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
# Line 616  else Line 928  else
928      else      else
929          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "  using PDEFAULT=\"$PDEFAULT\""
930          #  Strip the comments and add all the names          #  Strip the comments and add all the names
931          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
932          RETVAL=$?          RETVAL=$?
933          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
934              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 626  else Line 938  else
938          for i in $def ; do          for i in $def ; do
939              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
940          done          done
941          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
942            expand_pkg_groups
943            echo "    after group expansion packages are:  $PACKAGES"
944      fi      fi
945  fi  fi
946    
# Line 645  for p in $PACKAGES ; do Line 959  for p in $PACKAGES ; do
959  done  done
960  PACKAGES="$pack"  PACKAGES="$pack"
961  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
962  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
963  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
964  for i in $PACKAGES ; do  for i in $PACKAGES ; do
965      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 736  for i in $PACKAGES ; do Line 1050  for i in $PACKAGES ; do
1050      if test -d $adr ; then      if test -d $adr ; then
1051          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1052          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1053            if test "x$i" = xautodiff ; then
1054                AUTODIFF_PKG_USED=t
1055            fi
1056      else      else
1057          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1058          exit 1          exit 1
1059      fi      fi
1060  done  done
1061    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1062    
1063  echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  # Create a list of #define and #undef to enable/disable packages
1064  CPP_OPTIONS=  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1065  spaths=". $SOURCEDIRS"  cat <<EOF >$PACKAGES_DOT_H".tmp"
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
1066  C=== GENMAKE v2 ===  C=== GENMAKE v2 ===
1067  C  The following defines have been set by GENMAKE, so please do not  C  The following defines have been set by GENMAKE, so please do not
1068  C  edit anything below these comments.  In general, you should  C  edit anything below these comments.  In general, you should
1069  C  add or remove packages by re-running genmake with different  C  add or remove packages by re-running genmake with different
1070  C  "-enable" and/or "-disable" options.  C  "-enable" and/or "-disable" options.
1071    
1072    #ifndef PACKAGES_H
1073    #define PACKAGES_H
1074    
1075  C  Packages disabled by genmake:  C  Packages disabled by genmake:
1076  EOF  EOF
1077  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 813  for n in $names ; do Line 1090  for n in $names ; do
1090              fi              fi
1091          done          done
1092          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1093              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1094              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1095          fi          fi
1096      fi      fi
1097  done  done
1098  cat <<EOF >>CPP_OPTIONS.h.tmp  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1099    
1100  C  Packages enabled by genmake:  C  Packages enabled by genmake:
1101  EOF  EOF
1102  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1103      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1104      echo "#define $def" >> CPP_OPTIONS.h.tmp      echo "#define $def" >> $PACKAGES_DOT_H".tmp"
1105    #eh3 DEFINES="$DEFINES -D$def"
1106    
1107  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1108      case $i in      case $i in
1109          aim_v23)          aim_v23)
1110              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"
1111                DEFINES="$DEFINES -DALLOW_AIM"
1112                echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"
1113              ;;              ;;
1114      esac      esac
1115  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1116    
1117  done  done
1118  mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1119    
1120    #endif /* PACKAGES_H */
1121    EOF
1122    
1123    if test ! -f $PACKAGES_DOT_H ; then
1124        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1125    else
1126        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1127        RETVAL=$?
1128        if test "x$RETVAL" = x0 ; then
1129            rm -f $PACKAGES_DOT_H".tmp"
1130        else
1131            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1132            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1133        fi
1134    fi
1135    
1136  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1137  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1138  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = x ; then
1139        STANDARDDIRS="eesupp model"
1140    fi
1141  for d in $STANDARDDIRS ; do  for d in $STANDARDDIRS ; do
1142      adr="$ROOTDIR/$d/src"      adr="$ROOTDIR/$d/src"
1143      if test ! -d $adr ; then      if test ! -d $adr ; then
# Line 877  for d in $STANDARDDIRS ; do Line 1157  for d in $STANDARDDIRS ; do
1157      fi      fi
1158  done  done
1159    
1160    echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"
1161    echo "    of \"#define ALLOW_PKGNAME\"-type statements:"
1162    CPP_OPTIONS=
1163    spaths=". $INCLUDEDIRS"
1164    for i in $spaths ; do
1165        try="$i/CPP_OPTIONS.h"
1166        #  echo -n "    trying $try : "
1167        if test -f $try -a -r $try ; then
1168            echo "    found CPP_OPTIONS=\"$try\""
1169            CPP_OPTIONS="$try"
1170            break
1171        fi
1172    done
1173    if test "x$CPP_OPTIONS" = x ; then
1174        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1175        exit 1
1176    fi
1177    # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1178    names=`ls -1 "$ROOTDIR/pkg"`
1179    for n in $names ; do
1180        test_for_package_in_cpp_options $CPP_OPTIONS $n
1181    done
1182    
1183    
1184    #  Here, we build the list of files to be "run through" the adjoint
1185    #  compiler.
1186    if test -f ./ad_files ; then
1187        rm -f ./ad_files
1188    fi
1189    echo "  Creating the list of files for the adjoint compiler."
1190    for i in $SOURCEDIRS ; do
1191        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1192        for j in $list_files ; do
1193            cat $i/$j >> ad_files
1194        done
1195    done
1196    
1197    cat <<EOF > adjoint_sed
1198    s/call adopen(/call adopen ( mythid,\\
1199         \&           /g
1200    s/call adclose(/call adclose( mythid,\\
1201         \&           /g
1202    s/call adread(/call adread ( mythid,\\
1203         \&           /g
1204    s/call adwrite(/call adwrite( mythid,\\
1205         \&           /g
1206    
1207    EOF
1208    
1209  echo  echo
1210  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1211  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1212  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1213      if test -d $i ; then      if ! test -d $i ; then
1214          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1215      else  #   else
1216          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1217      fi      fi
1218  done  done
# Line 898  echo -n 'SRCFILES = '    > srclist.inc Line 1226  echo -n 'SRCFILES = '    > srclist.inc
1226  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1227  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1228  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1229    echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1230  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1231  for d in $alldirs ; do  for d in $alldirs ; do
1232      deplist=      deplist=
1233      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1234      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1235      for sf in $sfiles ; do      for sf in $sfiles ; do
1236          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1237              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1238                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1239                  touch .links.tmp/$sf                  touch .links.tmp/$sf
1240                  deplist="$deplist $sf"                  deplist="$deplist $sf"
1241                  case $extn in                  case $extn in
# Line 926  for d in $alldirs ; do Line 1255  for d in $alldirs ; do
1255                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1256                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1257                          ;;                          ;;
1258                        flow)
1259                            echo    " \\"  >> ad_flow_files.inc
1260                            echo -n " $sf" >> ad_flow_files.inc
1261                            ;;
1262                  esac                  esac
1263              fi              fi
1264          fi          fi
# Line 942  echo "" >> srclist.inc Line 1275  echo "" >> srclist.inc
1275  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1276  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1277  echo "" >> hlist.inc  echo "" >> hlist.inc
1278    echo "" >> ad_flow_files.inc
1279    
1280  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1281      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 955  echo "# by the command:" >> $MAKEFILE Line 1289  echo "# by the command:" >> $MAKEFILE
1289  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1290  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1291  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1292    
1293    EXE_AD=$EXECUTABLE"_ad"
1294    EXE_FTL=$EXECUTABLE"_ftl"
1295    EXE_SVD=$EXECUTABLE"_svd"
1296    
1297  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1298  #  #
1299  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
# Line 983  EXEDIR      = ${EXEDIR} Line 1322  EXEDIR      = ${EXEDIR}
1322  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1323  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1324    
1325    #eh3  new defines for the adjoint work
1326    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1327    EXE_AD      = ${EXE_AD}
1328    EXE_FTL     = ${EXE_FTL}
1329    EXE_SVD     = ${EXE_SVD}
1330    
1331  EOF  EOF
1332    
1333  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1028  MAKEFILE=${MAKEFILE} Line 1373  MAKEFILE=${MAKEFILE}
1373    
1374  EOF  EOF
1375    
1376  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1377  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1378  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1379  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1380    cat ad_flow_files.inc >> $MAKEFILE
1381    echo               >> $MAKEFILE
1382  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1383  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1384  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1385    
1386  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1387    rm -f ad_flow_files.inc
1388    
1389  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1390    
# Line 1060  output.txt: \$(EXECUTABLE) Line 1408  output.txt: \$(EXECUTABLE)
1408          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1409    
1410  clean:  clean:
1411            -cat AD_CONFIG.template > AD_CONFIG.h
1412          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}
1413  Clean:  Clean:
1414          @make clean          @make clean
1415          @make cleanlinks          @make cleanlinks
1416          -rm -f Makefile.bak          -rm -f Makefile.bak genmake_state genmake_*optfile make.log
1417  CLEAN:  CLEAN:
1418          @make Clean          @make Clean
1419          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1420          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1421          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1422          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1423    
1424    #eh3 Makefile: makefile
1425  makefile:  makefile:
1426          ${0} $@          ${0} $@
1427  cleanlinks:  cleanlinks:
# Line 1095  cleanlinks: Line 1445  cleanlinks:
1445  .p.f:  .p.f:
1446          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1447    
1448    #=========================================
1449    #===  Automatic Differentiation Rules  ===
1450    
1451    TAMC           = ${TAMC}
1452    TAF            = ${TAF}
1453    
1454    TAF_EXTRA      = ${TAF_EXTRA}
1455    TAMC_EXTRA     = ${TAMC_EXTRA}
1456    
1457    EOF
1458    
1459    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1460    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1461    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1462    for i in $ad_vars ; do
1463        name=$i
1464        t1="t2=\$"`echo $i`
1465        eval $t1
1466        printf "%-20s = " $name >> $MAKEFILE
1467        echo $t2 >> $MAKEFILE
1468    done
1469    
1470    echo "  Add the source list for AD code generation"
1471    echo >> $MAKEFILE
1472    echo -n "AD_FILES = " >> $MAKEFILE
1473    AD_FILES=`cat ad_files`
1474    for i in $AD_FILES ; do
1475        echo    " \\" >> $MAKEFILE
1476        echo -n " $i" >> $MAKEFILE
1477    done
1478    echo >> $MAKEFILE
1479    rm -f ad_files
1480    
1481    cat >>$MAKEFILE <<EOF
1482    
1483    # ... AD ...
1484    adall: ad_taf
1485    adtaf: ad_taf_output.f
1486    adtamc: ad_tamc_output.f
1487    
1488    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1489            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1490            @make \$(F77FILES)
1491            @make \$(AD_FLOW_FILES)
1492            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1493    
1494    ad_taf_output.f: ad_input_code.f
1495            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1496            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1497    
1498    adtafonly:
1499            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1500            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1501    
1502    ad_taf: ad_taf_output.o \$(OBJFILES)
1503            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1504    
1505    ad_tamc_output.f: ad_input_code.f
1506            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1507            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f
1508    
1509    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1510            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1511    
1512    
1513    # ... FTL ...
1514    ftlall: ftl_taf
1515    ftltaf: ftl_taf_output.f
1516    ftltamc: ftl_tamc_output.f
1517    
1518    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1519            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1520            @make \$(F77FILES)
1521            @make \$(AD_FLOW_FILES)
1522            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1523    
1524    ftl_taf_output.f: ftl_input_code.f
1525            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1526            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f
1527    
1528    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1529            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1530    
1531    ftl_tamc_output.f: ftl_input_code.f
1532            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1533            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f
1534    
1535    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1536            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1537    
1538    
1539    # ... SVD ...
1540    svd: svd_taf
1541    svd_taf_f: svd_taf_output.f
1542    
1543    svd_input_code.f: \$(SRCFILES)
1544            cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h
1545            @make \$(F77FILES)
1546            @make \$(AD_FLOW_FILES)
1547            cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f
1548    
1549    svd_taf_output.f: svd_input_code.f
1550            \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f
1551            cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f
1552    
1553    svd_taf: svd_taf_output.o \$(OBJFILES)
1554            \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)
1555    
1556    
1557    #=========================================
1558    
1559  EOF  EOF
1560    
1561  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1131  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1592  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1592    
1593  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1594    
1595    #  Write the "template" files for the adjoint builds
1596    cat >AD_CONFIG.template <<EOF
1597    C  WARNING: This file is automatically generated by genmake2 and
1598    C    used by the Makefile rules.  Please DO NOT EDIT this file
1599    C    unless you are CERTAIN that you know what you are doing.
1600    
1601    #undef ALLOW_ADJOINT_RUN
1602    #undef ALLOW_TANGENTLINEAR_RUN
1603    #undef ALLOW_ECCO_OPTIMIZATION
1604    EOF
1605    cat >ad_config.template <<EOF
1606    C  WARNING: This file is automatically generated by genmake2 and
1607    C    used by the Makefile rules.  Please DO NOT EDIT this file
1608    C    unless you are CERTAIN that you know what you are doing.
1609    
1610    #define ALLOW_ADJOINT_RUN
1611    #undef ALLOW_TANGENTLINEAR_RUN
1612    #undef ALLOW_ECCO_OPTIMIZATION
1613    EOF
1614    cat >ftl_config.template <<EOF
1615    C  WARNING: This file is automatically generated by genmake2 and
1616    C    used by the Makefile rules.  Please DO NOT EDIT this file
1617    C    unless you are CERTAIN that you know what you are doing.
1618    
1619    #undef ALLOW_ADJOINT_RUN
1620    #define ALLOW_TANGENTLINEAR_RUN
1621    #undef ALLOW_ECCO_OPTIMIZATION
1622    EOF
1623    cat >svd_config.template <<EOF
1624    C  WARNING: This file is automatically generated by genmake2 and
1625    C    used by the Makefile rules.  Please DO NOT EDIT this file
1626    C    unless you are CERTAIN that you know what you are doing.
1627    
1628    #undef ALLOW_ADJOINT_RUN
1629    #undef ALLOW_TANGENTLINEAR_RUN
1630    #undef ALLOW_ECCO_OPTIMIZATION
1631    EOF
1632    cp AD_CONFIG.template AD_CONFIG.h
1633    
1634    
1635  #  Write the "state" for future records  #  Write the "state" for future records
1636  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1637      echo -n "" > gm_state      echo -n "" > genmake_state
1638      for i in $gm_state ; do      for i in $gm_state ; do
1639          t1="t2=\$$i"          t1="t2=\$$i"
1640          eval $t1          eval $t1
1641          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
1642      done      done
1643  fi  fi

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