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revision 1.11 by edhill, Mon Sep 29 16:15:23 2003 UTC revision 1.268 by jmc, Sun Aug 10 16:46:04 2014 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19      tmp1=`uname`"_"`uname -m`      -help | --help | -h | --h
20      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`            Print this help message and exit.
21      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`  
22      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      -oad | --oad
23      echo "  The platform appears to be:  $PLATFORM"            Generate a Makefile for an OpenAD built
24  #     if test "x$OFLIST" = x ; then  
25  #       echo "  No pre-defined options files were found matching this platform"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
26  #       echo "  but examples for other platforms can be found in:"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
27  #       echo "    $ROOTDIR/tools/build_options"            Use "NAME" as the adoptfile.  By default, the file at
28  #     else            "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
29  #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"            "tools/adjoint_options/adjoint_default" will be used.
30  #       echo "  may work with this machine are:"  
31  #       for i in $OFLIST ; do      -nooptfile | --nooptfile
32  #           echo "    $i"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
33  #       done        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
34  #     fi            Use "NAME" as the optfile.  By default, an attempt will be
35                  made to find an appropriate "standard" optfile in the
36      echo "test" > test            tools/build_options/ directory.
37      ln -s ./test link  
38        -pdepend NAME | --pdepend NAME
39          -pdepend=NAME | --pdepend=NAME
40              Get package dependency information from "NAME".
41    
42        -pgroups NAME | --pgroups NAME
43          -pgroups=NAME | --pgroups=NAME
44              Get the package groups information from "NAME".
45    
46        -bash NAME
47              Explicitly specify the Bourne or BASH shell to use
48    
49        -make NAME | -m NAME
50          --make=NAME | -m=NAME
51              Use "NAME" for the MAKE program. The default is "make" but
52              many platforms, "gmake" is the preferred choice.
53    
54        -makefile NAME | -mf NAME
55          --makefile=NAME | -mf=NAME
56              Call the makefile "NAME".  The default is "Makefile".
57    
58        -makedepend NAME | -md NAME
59          --makedepend=NAME | -md=NAME
60              Use "NAME" for the MAKEDEPEND program.
61    
62        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
63          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
64              Specify the location of the MITgcm ROOTDIR as "NAME".
65              By default, genamke will try to find the location by
66              looking in parent directories (up to the 5th parent).
67    
68        -mods NAME | --mods NAME | -mo NAME | --mo NAME
69          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
70              Here, "NAME" specifies a list of directories that are
71              used for additional source code.  Files found in the
72              "mods list" are given preference over files of the same
73              name found elsewhere.
74    
75        -disable NAME | --disable NAME
76          -disable=NAME | --disable=NAME
77              Here "NAME" specifies a list of packages that we don't
78              want to use.  If this violates package dependencies,
79              genamke will exit with an error message.
80    
81        -enable NAME | --enable NAME
82          -enable=NAME | --enable=NAME
83              Here "NAME" specifies a list of packages that we wish
84              to specifically enable.  If this violates package
85              dependencies, genamke will exit with an error message.
86    
87        -standarddirs NAME | --standarddirs NAME
88          -standarddirs=NAME | --standarddirs=NAME
89              Here, "NAME" specifies a list of directories to be
90              used as the "standard" code.
91    
92        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
93          -fc=NAME | --fc=NAME
94              Use "NAME" as the fortran compiler.  By default, genmake
95              will search for a working compiler by trying a list of
96              "usual suspects" such as g77, f77, etc.
97    
98        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
99              Use "NAME" as the C compiler.  By default, genmake
100              will search for a working compiler by trying a list of
101              "usual suspects" such as gcc, c89, cc, etc.
102    
103        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
104              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
105              *only* works if CPP_EEOPTIONS.h allows this.
106    
107        -ignoretime | -ignore_time | --ignoretime | --ignore_time
108              Ignore all the "wall clock" routines entirely.  This will
109              not in any way hurt the model results -- it simply means
110              that the code that checks how long the model spends in
111              various routines will give junk values.
112    
113        -ts | --ts
114              Produce timing information per timestep
115        -papis | --papis
116              Produce summary MFlop/s (and IPC) with PAPI per timestep
117        -pcls | --pcls
118              Produce summary MFlop/s etc. with PCL per timestep
119        -foolad | --foolad
120              Fool the AD code generator
121        -papi | --papi
122              Performance analysis with PAPI
123        -pcl | --pcl
124              Performance analysis with PCL
125        -hpmt | --hpmt
126              Performance analysis with the HPM Toolkit
127    
128        -ieee | --ieee
129              use IEEE numerics.  Note that this option *only* works
130              if it is supported by the OPTFILE that is being used.
131        -devel | --devel
132              Add additional warning and debugging flags for development
133              (if supported by the OPTFILE); also switch to IEEE numerics.
134        -gsl | --gsl
135              Use GSL to control floating point rounding and precision
136    
137        -mpi | --mpi
138              Include MPI header files and link to MPI libraries
139        -mpi=PATH | --mpi=PATH
140              Include MPI header files and link to MPI libraries using MPI_ROOT
141              set to PATH. i.e. Include files from \$PATH/include, link to libraries
142              from \$PATH/lib and use binaries from \$PATH/bin.
143    
144        -omp | --omp
145              Activate OpenMP code + use Compiler option OMPFLAG
146        -omp=OMPFLAG | --omp=OMPFLAG
147              Activate OpenMP code + use Compiler option OMPFLAG
148    
149        -es | --es | -embed-source | --embed-source
150              Embed a tarball containing the full source code
151              (including the Makefile, etc.) used to build the
152              executable [off by default]
153    
154        -ds | --ds
155              Report genmake internal variables status (DUMPSTATE)
156              to file "genmake_state" (for debug purpose)
157    
158      While it is most often a single word, the "NAME" variables specified
159      above can in many cases be a space-delimited string such as:
160    
161        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
162        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
163        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
164    
165      which, depending upon your shell, may need to be single-quoted.
166    
167      For more detailed genmake documentation, please see:
168    
169        http://mitgcm.org/public/devel_HOWTO/
170    
171    EOF
172    
173        exit 1
174    }
175    
176    # Search for particular CPP #cmds associated with packages
177    # usage: test_for_package_in_cpp_options CPP_file package_name
178    test_for_package_in_cpp_options() {
179        cpp_options=$1
180        pkg=$2
181        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
182        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
183        test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
184        test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
185    }
186    
187    # Search for particular CPP #cmds associated with MPI
188    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189    test_for_mpi_in_cpp_eeoptions() {
190        cpp_options=$1
191        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
192        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
193    }
194    
195    # Search for particular string in a file. Return 1 if detected, 0 if not
196    # usage: test_for_string_in_file file string
197    test_for_string_in_file() {
198        file=$1
199        strng=$2
200        grep "$strng" $file > /dev/null 2>&1
201      RETVAL=$?      RETVAL=$?
202      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
203          LN="ln -s"          printf "Error: In $file there is an illegal line: "
204            grep -i "$strng" $file
205            exit 99
206        fi
207        return 0
208    }
209    
210    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
211    # the package list.
212    expand_pkg_groups() {
213        new_packages=
214        if test -r $PKG_GROUPS ; then
215            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
216            cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
217            matched=0
218            for i in $PACKAGES ; do
219                line=`grep "^ *$i" $TMP.p2`
220                RETVAL=$?
221                if test "x$RETVAL" = x0 ; then
222                    matched=1
223                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
224                    echo "    replacing \"$i\" with:$replace"
225                    new_packages="$new_packages $replace"
226                else
227                    new_packages="$new_packages $i"
228                fi
229            done
230            PACKAGES=$new_packages
231            rm -f $TMP.p[1,2]
232            return $matched
233      else      else
234          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
235      fi      fi
236      rm -f test link  }
237    
238      if test "x$CPP" = x ; then  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
239          CPP="cpp -traditional -P"  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
240    check_for_broken_Ff()  {
241        #  Do we have defaults for $FS and/or $FS90 ?
242        tfs=f
243        tfs9=f90
244        if test "x$FS" != x ; then
245            tfs="$FS"
246        fi
247        if test "x$FS90" != x ; then
248            tfs9="$FS90"
249      fi      fi
250    
251      # look for possible fortran compilers      #  First check the ability to create a *.F/.f pair.
252      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      cat <<EOF >> genmake_hello.F
253      p_FC=        program hello
254          write(*,*) 'hi'
255          stop
256          end
257    EOF
258        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
259        RETVAL=$?
260        if test "x$RETVAL" != x0 ; then
261            if test "x$FS" = x ; then
262                FS='for'
263                FS90='fr9'
264                check_for_broken_Ff
265            else
266                cat <<EOF 2>&1
267    ERROR: Your file system cannot distinguish between *.F and *.f files
268      (fails the "cp" test) and this program cannot find a suitable
269      replacement extension.  Please try a different build environment or
270      contact the <MITgcm-support@mitgcm.org> list for help.
271    
272    EOF
273                exit -1
274            fi
275            return
276        fi
277        rm -f genmake_hello.*
278    
279        #  Check the ability of ${MAKE} and ${LN} to use the current set
280        #  of extensions.
281        cat <<EOF >> genmake_hello.F
282          program hello
283          write(*,*) 'hi'
284          stop
285          end
286    EOF
287        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
288        cat <<EOF >> $MAKEFILE
289    .SUFFIXES:
290    .SUFFIXES: .$tfs .F
291    .F.$tfs:
292            $LN \$< \$@
293    EOF
294        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
295        RETVAL=$?
296        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
297            if test "x$FS" = x ; then
298                FS='for'
299                FS90='fr9'
300                check_for_broken_Ff
301            else
302                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
303                echo "       see simple makefile: '$MAKEFILE' (left here)"
304                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
305                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
306                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
307                echo ""
308                exit -1
309                return
310            fi
311        fi
312        rm -f genmake_hello.* $MAKEFILE
313        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
314    
315        #  If we make it here, use the extensions
316        FS=$tfs
317        FS90=$tfs9
318        return
319    }
320    
321    look_for_makedepend()  {
322    
323        #  The "original" makedepend is part of the Imake system that is
324        #  most often distributed with XFree86 or with an XFree86 source
325        #  package.  As a result, many machines (eg. generic Linux) do not
326        #  have a system-default "makedepend" available.  For those
327        #  systems, we have two fall-back options:
328        #
329        #    1) a makedepend implementation shipped with the cyrus-imapd
330        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
331        #    2) a local tools/xmakedepend shell script
332        #
333        #  So the choices are, in order:
334        #    1) use the user-specified program
335        #    2) use the local xmakedepend script (get all dependencies, but slower)
336        #    3) use a system-wide default
337        #    4) locally build and use the cyrus makedepend
338        #             (faster, but can miss some dependencies)
339        #
340        echo >> $LOGFILE
341        echo "running: look_for_makedepend()" >> $LOGFILE
342        if test "x${MAKEDEPEND}" != x ; then
343            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
344            RETVAL=$?
345            if test x"$RETVAL" = x0 ; then
346                build_cyrus_makedepend
347                RETVAL=$?
348                if test "x$RETVAL" != x0 ; then
349                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
350                    MAKEDEPEND=
351                fi
352            else
353                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
354                RETVAL=$?
355                if test "x$RETVAL" = x0 ; then
356                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
357                fi
358                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
359            fi
360        fi
361        if test "x${MAKEDEPEND}" = x ; then
362            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
363            #  echo 'MAKEFILE="'$MAKEFILE'"'
364            cat <<EOF >> $MAKEFILE
365    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
366    #
367    #   Some "makedepend" implementations will die if they cannot
368    #   find a Makefile -- so this file is here to gives them an
369    #   empty one to find and parse.
370    EOF
371            cat <<EOF >> genmake_tc.f
372          program test
373          write(*,*) 'test'
374          stop
375          end
376    EOF
377            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
378            RV1=$?
379            which makedepend > /dev/null 2>&1
380            RV2=$?
381            if test "x${RV2}" = x0 ; then
382                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
383                RV3=$? ; loc_msg='not working.'
384            else RV3=$RV2 ; loc_msg='not found.'
385            fi
386            test -f $MAKEFILE  &&  rm -f $MAKEFILE
387            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
388            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
389            if test "x${RV1}" = x0 ; then
390                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            elif test "x${RV3}" = x0 ; then
393                echo "    local tools/xmakedepend not working. Use system-default makedepend"
394                MAKEDEPEND=makedepend
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            else
397                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
398                echo -n "    Try to build cyrus-makedepend ..."
399                #  Try to build the cyrus implementation
400                build_cyrus_makedepend
401                RETVAL=$?
402                if test "x$RETVAL" = x0 ; then
403                    echo "  Works"
404                else
405                    echo "  Fails" ; echo "" >> $LOGFILE
406                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
407                    echo ""
408                    exit -1
409                    return
410                fi
411            fi
412        fi
413    }
414    
415    build_cyrus_makedepend()  {
416        echo >> $LOGFILE
417        echo "running: build_cyrus_makedepend()" >> $LOGFILE
418        rm -f ./genmake_cy_md
419        (
420            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
421                &&  ./configure > /dev/null 2>&1  \
422                &&  $MAKE > /dev/null 2>&1
423            if test -x ./makedepend.exe ; then
424                $LN ./makedepend.exe ./makedepend
425            fi
426            ./makedepend ifparser.c > /dev/null 2>&1  \
427                &&  echo "true"
428        ) > ./genmake_cy_md
429        grep true ./genmake_cy_md > /dev/null 2>&1
430        RETVAL=$?
431        rm -f ./genmake_cy_md
432        if test "x$RETVAL" = x0 ; then
433            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
434            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
435            return 0
436        else
437            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
438            return 1
439        fi
440    }
441    
442    build_embed_encode()
443    {
444        printf "  building the embed-encode utility...  "
445        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
446            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
447                echo
448                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
449                echo
450                EMBED_SRC=f
451                return 1
452            fi
453            clist="cc gcc c89 $CC"
454            for ic in $clist ; do
455                comm="$ic -o encode_files encode_files.c"
456                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
457                RETVAL=$?
458                if test "x$RETVAL" = x0 ; then
459                    echo "OK"
460                    return 0
461                fi
462            done
463            echo
464            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
465            echo "      so it has been disabled"
466            echo
467            EMBED_SRC=f
468            return 1
469        fi
470        echo "OK"
471    }
472    
473    #  look for possible C compilers
474    look_for_C_compilers() {
475        echo >> $LOGFILE
476        echo "running: look_for_C_compilers()" >> $LOGFILE
477        rm -f ./genmake_hello.c  ./genmake_hello
478        cat >> genmake_hello.c << EOF
479    #include <stdio.h>
480    int main(int argc, char **argv) {
481      printf("Hello!\n");
482      return 0;
483    }
484    EOF
485        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
486        p_CC=
487      for c in $tmp ; do      for c in $tmp ; do
488          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
489          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
490            $COMM >> $LOGFILE 2>&1
491            RETVAL=$?
492            if test "x${RETVAL}" = x0 ; then
493                echo " $c test successful" >> $LOGFILE
494                p_CC="$p_CC $c"
495            fi
496        done
497        rm -f ./genmake_hello.c ./genmake_hello
498        if test "x${p_CC}" = x ; then
499            cat 1>&2 <<EOF
500    
501    Error: No C compilers were found in your path.  Please specify one using:
502    
503        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
504        2) the CC or MITGCM_CC environment variables.
505    
506    EOF
507            exit 1
508        else
509            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
510            if test "x$CC" = x ; then
511                CC=`echo $p_CC | $AWK '{print $1}'`
512                echo "  Setting C compiler to: "$CC
513            fi
514        fi
515        echo " --> set CC='$CC'" >> $LOGFILE
516    }
517    
518    # Guess possible config options for this host
519    find_possible_optfile()  {
520    
521        echo >> $LOGFILE
522        echo "running: find_possible_optfile()" >> $LOGFILE
523        tmp1=`uname`"_"`uname -m`
524        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
525        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
526        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
527        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
528        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
529        PLATFORM=$tmp3
530        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
531        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
532        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
533    
534        #================================================================
535        #  look for possible FORTRAN compilers
536        echo "  look for possible FORTRAN compilers" >> $LOGFILE
537        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
538        p_FC=
539        rm -f ./genmake_hello.f
540        cat >> genmake_hello.f <<EOF
541        program hello        program hello
542        do i=1,3        do i=1,3
543          print *, 'hello world : ', i          print *, 'hello world : ', i
544        enddo        enddo
545        end        end
546  EOF  EOF
547          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
548            COMM="$f -o genmake_hello genmake_hello.f"
549            echo $COMM >> $LOGFILE
550            $COMM >> $LOGFILE 2>&1
551          RETVAL=$?          RETVAL=$?
552          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
553              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
554                p_FC="$p_FC $f"
555          fi          fi
556      done      done
557        rm -f ./genmake_hello.f ./genmake_hello
558      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
559          cat 1>&2 <<EOF          cat 1>&2 <<EOF
560    
# Line 70  Error: No Fortran compilers were found i Line 562  Error: No Fortran compilers were found i
562    
563      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
564      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
565      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
566    
567  EOF  EOF
568          exit 1          exit 1
569      else      else
570          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
571      fi      fi
572    
573      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
574          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
575          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
576              OPTFILE=$p_OF          for i in $p_FC ; do
577              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
578              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
579              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
580                    break
581                fi
582            done
583        fi
584    
585        if test "x$OPTFILE" = x ; then
586            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
587            if test ! -r $OPTFILE ; then
588                 echo "  I looked for the file "$OPTFILE" but did not find it"
589          fi          fi
590      done      fi
591    
592      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
593          cat 1>&2 <<EOF          cat 1>&2 <<EOF
594    
# Line 106  Error: No options file was found in:  $R Line 604  Error: No options file was found in:  $R
604  EOF  EOF
605          exit 1          exit 1
606      fi      fi
607        }
608  #     # look for possible MPI libraries  
609  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
610  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
611  #     RETVAL=$?  mpi_headers_do_local_copy() {
612  #     if test "x${RETVAL}" = x0 ; then  
613  #       cat >>test.f <<EOF      dBug=0
614  #       PROGRAM HELLO      rm -rf ./mpi_headers
615  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
616  #       PRINT *,'Hello World'  
617  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
618  #       STOP          echo -n '  Check MPI headers ... '
619  #       END          listIni=$MPI_HEADER_FILES
620  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
621  #       eval "$mpi_fort -showme test.f > out"          outp=$?
622  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
623  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
624  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
625  #           for i in $a ; do  
626  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
627  #                   -*)          while test $doCheck = 1 ; do
628  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
629  #               esac            for i in $list2check ; do
630  #           done              if test -f $MPIINCLUDEDIR/$i ; then
631  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
632  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
633  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
634  #       rm -f test.f out                for j in $newInc ; do
635  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
636                    outp=$?
637                    if test $outp != 0 ; then
638                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
639                      newList="$newList $j"
640                    fi
641                  done
642                  if test $dBug = 1 ; then echo "" ; fi
643                fi
644              done
645              if test "x$newList" = x ; then doCheck=0
646              else list2check=$newList ; list2copy="$list2copy $newList"
647              fi
648            done
649            list2copy="$MPI_HEADER_FILES $list2copy"
650            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
651    
652            #----- create local mpi_headers dir if we have files to copy
653            mkListInc=`echo $list2copy | wc -w`
654            if test $mkListInc != 0 ; then
655              echo 'create local "./mpi_headers" dir'
656              mkdir -p ./mpi_headers
657              INCLUDES="-I./mpi_headers $INCLUDES"
658              mkListInc=1
659            fi
660            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
661    
662            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
663            for i in $list2copy ; do
664              if test -f $MPIINCLUDEDIR/$i ; then
665                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
666                if test $i = 'mpif.h' ; then
667                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
668                fi
669                if test $mkListInc = 2 ; then
670                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
671                fi
672                if test $mkListInc = 1 ; then
673                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
674                fi
675              fi
676            done
677        else
678            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
679            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
680    #       exit -1
681        fi
682  }  }
683    
684  #  Parse the package dependency information  #  Parse the package dependency information
# Line 144  get_pdepend_list()  { Line 687  get_pdepend_list()  {
687      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
688      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
689      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
690          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
691          > ./.pd_tmp          > ./.pd_tmp
692      source ./.pd_tmp      RETVAL=$?
693        if test ! "x${RETVAL}" = x0 ; then
694          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
695          exit 1
696        fi
697        . ./.pd_tmp
698      rm -f ./.pd_tmp      rm -f ./.pd_tmp
699    }
700    
701    #  Build a CPP macro to automate calling C routines from FORTRAN
702    get_fortran_c_namemangling()  {
703    
704        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
705        if test ! "x$FC_NAMEMANGLE" = x ; then
706            return 0
707        fi
708        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
709    
710        default_nm="#define FC_NAMEMANGLE(X) X ## _"
711    
712      echo -n "PNAME = "${}      cat > genmake_test.c <<EOF
713    void tcall( char * string ) { tsub( string ); }
714    EOF
715        COMM="$CC $CFLAGS -c genmake_test.c"
716        echo ' '$COMM >> $LOGFILE
717        $COMM >> $LOGFILE 2>&1
718        RETVAL=$?
719        if test "x$RETVAL" != x0 ; then
720            FC_NAMEMANGLE=$default_nm
721            cat <<EOF>> $LOGFILE
722    
723     WARNING: C test compile fails
724     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
725     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
726    EOF
727            return 1
728        fi
729        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
730        RETVAL=$?
731        if test "x$RETVAL" != x0 ; then
732            FC_NAMEMANGLE=$default_nm
733            cat <<EOF>> $LOGFILE
734    
735     WARNING: The "nm" command failed.
736     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
737     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
738    EOF
739            return 1
740        fi
741        cat > genmake_tcomp.$FS <<EOF
742          subroutine tcall( string )
743          character*(*) string
744          call tsub( string )
745          end
746    EOF
747        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
748        echo ' '$COMM >> $LOGFILE
749        $COMM >> $LOGFILE 2>&1
750        RETVAL=$?
751        if test "x$RETVAL" != x0 ; then
752            FC_NAMEMANGLE=$default_nm
753            cat <<EOF>> $LOGFILE
754    
755     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
756     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
757     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
758    EOF
759            return 1
760        fi
761        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
762        RETVAL=$?
763        if test "x$RETVAL" != x0 ; then
764            FC_NAMEMANGLE=$default_nm
765            cat <<EOF>> $LOGFILE
766    
767     WARNING: The "nm" command failed.
768     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
769     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
770    EOF
771            return 1
772        fi
773    
774        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
775        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
776        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
777        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
778    
779        nmangle="X"
780        if test "x$c_a" != "x$f_a" ; then
781            comm="echo x$f_a | sed -e 's|x$c_a||'"
782            a=`eval $comm`
783            nmangle="$a ## $nmangle"
784        fi
785        if test "x$c_b" != "x$f_b" ; then
786            comm="echo x$f_b | sed -e 's|x$c_b||'"
787            b=`eval $comm`
788            nmangle="$nmangle ## $b"
789        fi
790    
791        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
792    
793        #  cleanup the testing files
794        rm -f genmake_tcomp.* genmake_test.*
795    
796        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
797  }  }
798    
799    check_HAVE_CLOC()  {
800        echo >> $LOGFILE
801        echo "running: check_HAVE_CLOC()" >> $LOGFILE
802        get_fortran_c_namemangling
803        cat <<EOF > genmake_tc_1.c
804    $FC_NAMEMANGLE
805    #include <stdio.h>
806    #include <stdlib.h>
807    #include <unistd.h>
808    #include <assert.h>
809    #include <sys/time.h>
810    void FC_NAMEMANGLE(cloc) ( double *curtim )
811    {
812     struct timeval tv1;
813     gettimeofday(&tv1 , (void *)NULL );
814     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
815     *curtim = *curtim/1.E6;
816    }
817    EOF
818        COMM="$CC $CFLAGS -c genmake_tc_1.c"
819        echo $COMM >> $LOGFILE
820        $COMM >> $LOGFILE 2>&1
821        RET_C=$?
822        cat <<EOF > genmake_tc_2.$FS
823          program hello
824          REAL*8 wtime
825          external cloc
826          call cloc(wtime)
827          print *," HELLO WORLD", wtime
828          end
829    EOF
830        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> $LOGFILE
832        $COMM >> $LOGFILE 2>&1
833        RET_F=$?
834        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
835        RETVAL=$?
836        if test "x$RETVAL" = x0 ; then
837            HAVE_CLOC=t
838        fi
839        rm -f genmake_tc*
840        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
841    }
842    
843  #  Explain usage  check_HAVE_SIGREG()  {
844  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
845      echo          return
846      echo "Usage: "$0" [OPTIONS]"      fi
847      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
848      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
849      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
850      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
851      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
852      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
853      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
854      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
855      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
856      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
857      echo "    -make NAME | -m NAME"  
858      echo "      --make=NAME | -m=NAME"  int * ip;
859      echo "    -makefile NAME | -mf NAME"  
860      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
861      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
862      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
863      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
864      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
     echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  
     echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
     echo "    -disable NAME | --disable NAME"  
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"  
     echo  
     echo "  and NAME is a string such as:"  
     echo  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
     echo  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
865  }  }
866    
867  #eh3 # This is the generic configuration.  void FC_NAMEMANGLE(sigreg) (int * aip)
868  #eh3 set LN         = ( 'ln -s' )  {
869  #eh3 set CPP        = ( '/lib/cpp -P' )      struct sigaction s;
870  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      ip = aip;
871  #eh3 set KPP        = (  )      s.sa_flags = SA_SIGINFO;
872  #eh3 set FC         = ( 'f77' )      s.sa_sigaction = (void *)killhandler;
873  #eh3 set LINK       = $FC      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
874  #eh3 set MAKEDEPEND = ( 'makedepend' )          printf("Sigaction returned error = %d\n", errno);
875  #eh3 set INCLUDES   = ( -I. )          exit(0);
876  #eh3 set FFLAGS     = (  )      }
877  #eh3 set FOPTIM     = (  )      return;
878  #eh3 set CFLAGS     = (  )  }
879  #eh3 set KFLAGS1    = (  )  EOF
880  #eh3 set KFLAGS2    = (  )      COMM="$CC $CFLAGS -c genmake_tc_1.c"
881  #eh3 set LIBS       = (  )      echo $COMM >> $LOGFILE
882  #eh3 set KPPFILES   = (  )      $COMM >> $LOGFILE 2>&1
883  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      RET_C=$?
884  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      cat <<EOF > genmake_tc_2.$FS
885          program hello
886          integer anint
887          common /iv/ anint
888          external sigreg
889          call sigreg(anint)
890          end
891    EOF
892        cat genmake_tc_2.$FS >> $LOGFILE
893        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
894        echo $COMM >> $LOGFILE
895        $COMM >> $LOGFILE 2>&1
896        RETVAL=$?
897        if test "x$RETVAL" = x0 ; then
898            HAVE_SIGREG=t
899        fi
900        rm -f genmake_tc*
901        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
902    }
903    
904    check_HAVE_SETRLSTK()  {
905        if test ! "x$HAVE_SETRLSTK" = x ; then
906            return
907        fi
908        echo >> $LOGFILE
909        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
910        get_fortran_c_namemangling
911        cat <<EOF > genmake_tc_1.c
912    $FC_NAMEMANGLE
913    #include <sys/time.h>
914    #include <sys/resource.h>
915    #include <unistd.h>
916    void FC_NAMEMANGLE(setrlstk) ()
917    {
918        struct rlimit rls;
919        rls.rlim_cur = RLIM_INFINITY;
920        rls.rlim_max = RLIM_INFINITY;
921        setrlimit(RLIMIT_STACK, &rls);
922        return;
923    }
924    EOF
925        COMM="$CC $CFLAGS -c genmake_tc_1.c"
926        echo $COMM >> $LOGFILE
927        $COMM >> $LOGFILE 2>&1
928        RET_C=$?
929        cat <<EOF > genmake_tc_2.$FS
930          program hello
931          external setrlstk
932          call setrlstk()
933          end
934    EOF
935        cat genmake_tc_2.$FS >> $LOGFILE
936        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
937        echo $COMM >> $LOGFILE
938        $COMM >> $LOGFILE 2>&1
939        RETVAL=$?
940        if test "x$RETVAL" = x0 ; then
941            HAVE_SETRLSTK=t
942        fi
943        rm -f genmake_tc*
944        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
945    }
946    
947    check_HAVE_STAT()  {
948        echo >> $LOGFILE
949        echo "running: check_HAVE_STAT()" >> $LOGFILE
950        get_fortran_c_namemangling
951        cat <<EOF > genmake_tc_1.c
952    $FC_NAMEMANGLE
953    #include <stdio.h>
954    #include <stdlib.h>
955    #include <unistd.h>
956    #include <sys/stat.h>
957    #include <sys/types.h>
958    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
959    {
960        char name[512];
961        struct stat astat;
962    
963        name[0] = 'a'; name[1] = '\0';
964        if (! stat(name, &astat))
965            *nbyte = (int)(astat.st_size);
966        else
967            *nbyte = -1;
968    }
969    EOF
970        COMM="$CC $CFLAGS -c genmake_tc_1.c"
971        echo $COMM >> $LOGFILE
972        $COMM >> genmake_tc.log 2>&1
973        RET_C=$?
974        cat <<EOF > genmake_tc_2.$FS
975          program hello
976          integer nbyte
977          call tfsize(nbyte)
978          print *," HELLO WORLD", nbyte
979          end
980    EOF
981        cat genmake_tc_2.$FS >> $LOGFILE
982        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
983        echo $COMM >> $LOGFILE
984        $COMM >> genmake_tc.log 2>&1
985        RETVAL=$?
986        if test "x$RETVAL" = x0 ; then
987            HAVE_STAT=t
988        fi
989        rm -f genmake_tc*
990        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
991    }
992    
993    check_netcdf_libs()  {
994        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
995            return
996        fi
997        echo >> $LOGFILE
998        echo "running: check_netcdf_libs()" >> $LOGFILE
999        cat <<EOF > genmake_tnc.F
1000          program fgennc
1001    #include "netcdf.inc"
1002    EOF
1003       #if test ! "x$MPI" = x ; then
1004       #    echo '#include "mpif.h"' >> genmake_tnc.F
1005       #fi
1006        cat <<EOF >> genmake_tnc.F
1007          integer iret, ncid, xid
1008          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1009          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010          iret = nf_def_dim(ncid, 'X', 11, xid)
1011          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1012          iret = nf_close(ncid)
1013          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014          end
1015    EOF
1016        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1017        cat genmake_tnc.F >> genmake_tnc.log
1018        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1019        RET_CPP=f
1020        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1021        echo "$COMM" >> genmake_tnc.log
1022        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1023        if test "x$RET_CPP" = xf ; then
1024            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1025                >> genmake_tnc.log
1026            echo "    Please check that \$INCLUDES is properly set." \
1027                >> genmake_tnc.log
1028        fi
1029        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1030        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1031        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1032            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1033        RET_COMPILE=$?
1034        cat genmake_tnc.log >> $LOGFILE
1035    
1036        #EH3  Remove test program execution for machines that either disallow
1037        #EH3  execution or cannot support it (eg. cross-compilers)
1038        #EH3
1039        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1040        #EH3 RETVAL=$?
1041        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1042    
1043        if test "x$RET_COMPILE" = x0 ; then
1044            HAVE_NETCDF=t
1045            echo "check_netcdf: successful" >> $LOGFILE
1046        else
1047            # try again with "-lnetcdf" added to the libs
1048            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1049            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1050            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1051            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1052            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1053                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1054                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1055            RET_COMPILE=$?
1056            echo >> $LOGFILE
1057            cat genmake_tnc.log >> $LOGFILE
1058            if test "x$RET_COMPILE" = x0 ; then
1059                LIBS="$LIBS -lnetcdf"
1060                HAVE_NETCDF=t
1061                echo "check_netcdf: successful" >> $LOGFILE
1062            else
1063            # try again with "-lnetcdff" added to the libs
1064                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1065                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1066                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1067                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1068                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1069                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1070                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1071                RET_COMPILE=$?
1072                echo >> $LOGFILE
1073                cat genmake_tnc.log >> $LOGFILE
1074                if test "x$RET_COMPILE" = x0 ; then
1075                    LIBS="$LIBS -lnetcdff -lnetcdf"
1076                    HAVE_NETCDF=t
1077                    echo "check_netcdf: successful" >> $LOGFILE
1078                fi
1079            fi
1080        fi
1081        rm -f genmake_tnc*
1082        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1083    }
1084    
1085    check_lapack_libs()  {
1086        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1087        echo >> $LOGFILE
1088        echo "running: check_lapack_libs()" >> $LOGFILE
1089        cat <<EOF > genmake_tla.F
1090          program fgenla
1091          integer info
1092          integer ipiv( 2 )
1093          double precision ab( 4, 2 ), b( 2 )
1094          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1095          data b / 1., 1. /
1096          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1097          IF (info .NE. 0) write(*,*) 'Error:', info
1098          write(*,*) b
1099          end
1100    EOF
1101        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1102        cat genmake_tla.F >> genmake_tla.log
1103        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1104        RET_CPP=f
1105        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1106        echo "$COMM" >> genmake_tla.log
1107        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1108        if test "x$RET_CPP" = xf ; then
1109            echo "  WARNING: CPP failed to pre-process the lapack test." \
1110                >> genmake_tla.log
1111            echo "    Please check that \$INCLUDES is properly set." \
1112                >> genmake_tla.log
1113        fi
1114        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1115        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1116        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1117            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1118        RET_COMPILE=$?
1119        cat genmake_tla.log >> $LOGFILE
1120    
1121        # test program execution not always possible (see check_netcdf_libs)
1122        #
1123        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1124        #RETVAL=$?
1125        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1126    
1127        if test "x$RET_COMPILE" = x0 ; then
1128            HAVE_LAPACK=t
1129            echo "check_lapack: successful" >> $LOGFILE
1130        else
1131            # try again with "-llapack" added to the libs
1132            echo "==> try again with added '-llapack'" > genmake_tla.log
1133            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1134            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1135            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1136            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1137                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1138                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1139            RET_COMPILE=$?
1140            echo >> $LOGFILE
1141            cat genmake_tla.log >> $LOGFILE
1142            if test "x$RET_COMPILE" = x0 ; then
1143                LIBS="$LIBS -llapack"
1144                HAVE_LAPACK=t
1145                echo "check_lapack: successful" >> $LOGFILE
1146            else
1147            # try again with "-lf77blas -lcblas" added to the libs
1148                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1149                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1150                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1151                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1152                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1153                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1154                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1155                RET_COMPILE=$?
1156                echo >> $LOGFILE
1157                cat genmake_tla.log >> $LOGFILE
1158                if test "x$RET_COMPILE" = x0 ; then
1159                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1160                    HAVE_LAPACK=t
1161                    echo "check_lapack: successful" >> $LOGFILE
1162                else
1163                # try again with "-latlas" added to the libs
1164                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1165                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1166                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1167                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1168                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1169                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1170                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1171                    RET_COMPILE=$?
1172                    echo >> $LOGFILE
1173                    cat genmake_tla.log >> $LOGFILE
1174                    if test "x$RET_COMPILE" = x0 ; then
1175                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1176                        HAVE_LAPACK=t
1177                        echo "check_lapack: successful" >> $LOGFILE
1178                    fi
1179                fi
1180            fi
1181        fi
1182        rm -f genmake_tla*
1183        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1184    }
1185    
1186    check_HAVE_FLUSH()  {
1187        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1188            return
1189        fi
1190        echo >> $LOGFILE
1191        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1192        cat <<EOF > genmake_tflsh.$FS
1193          program fgenflsh
1194          integer iounit
1195          character*9 fname
1196          iounit = 26
1197          fname = 'tmp.tflsh'
1198          open(iounit,FILE=fname,STATUS='unknown')
1199          write(iounit,*) 'genmake_tflsh: hello'
1200          call flush(iounit)
1201          close(iounit)
1202          end
1203    EOF
1204        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1205        cat genmake_tflsh.$FS >> genmake_tflsh.log
1206        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1207    
1208        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1209        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1210        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1211            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1212        RET_COMPILE=$?
1213    
1214        if test "x$RET_COMPILE" = x0 ; then
1215            HAVE_FLUSH=t
1216            #cat genmake_tflsh.log >> $LOGFILE
1217            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1218        else
1219            HAVE_FLUSH=f
1220            cat genmake_tflsh.log >> $LOGFILE
1221        fi
1222        rm -f genmake_tflsh*
1223        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1224    }
1225    
1226    ###############################################################################
1227    #   Sequential part of script starts here
1228    ###############################################################################
1229    
1230  #  Set defaults here  #  Set defaults here
1231  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 228  PLATFORM= Line 1234  PLATFORM=
1234  LN=  LN=
1235  S64=  S64=
1236  KPP=  KPP=
1237  FC=  #FC=
1238    #CC=gcc
1239    #CPP=
1240  LINK=  LINK=
1241  DEFINES="-DWORDLENGTH=4"  DEFINES=
1242  PACKAGES=  PACKAGES=
1243  ENABLE=  ENABLE=
1244  DISABLE=  DISABLE=
1245  MAKEFILE=  # MAKEFILE=
1246  MAKEDEPEND=  # MAKEDEPEND=
1247  PDEPEND=  PKG_DEPEND=
1248  DUMPSTATE=t  PKG_GROUPS=
1249  PDEFAULT=  DUMPSTATE=f
1250  OPTFILE=  OPTFILE=
1251  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1252  FFLAGS=  FFLAGS=
1253  FOPTIM=  FOPTIM=
1254    FEXTRAFLAGS=
1255    USE_EXTENDED_SRC=
1256    EXTENDED_SRC_FLAG=
1257    GET_FC_VERSION=
1258  CFLAGS=  CFLAGS=
1259  KFLAGS1=  KFLAGS1=
1260  KFLAGS2=  KFLAGS2=
1261    #LDADD=
1262  LIBS=  LIBS=
1263  KPPFILES=  KPPFILES=
1264  NOOPTFILES=  NOOPTFILES=
1265  NOOPTFLAGS=  NOOPTFLAGS=
1266    MPI=
1267    MPIPATH=
1268    OMP=
1269    OMPFLAG=
1270    USE_R4=
1271    TS=
1272    PAPIS=
1273    PCLS=
1274    FOOLAD=
1275    PAPI=
1276    PCL=
1277    HPMT=
1278    GSL=
1279    DEVEL=
1280    HAVE_TEST_L=
1281    
1282    # set this to "t" to enable lapack test
1283    CHECK_FOR_LAPACK=f
1284    
1285    # DEFINES checked by test compilation or command-line
1286    HAVE_SYSTEM=
1287    HAVE_FDATE=
1288    FC_NAMEMANGLE=
1289    HAVE_CLOC=
1290    # HAVE_SETRLSTK=
1291    HAVE_STAT=
1292    HAVE_NETCDF=
1293    HAVE_ETIME=
1294    IGNORE_TIME=
1295    HAVE_LAPACK=
1296    HAVE_FLUSH=
1297    
1298  MODS=  MODS=
1299  TOOLSDIR=  TOOLSDIR=
1300  SOURCEDIRS=  SOURCEDIRS=
1301  INCLUDEDIRS=  INCLUDEDIRS=
1302    STANDARDDIRS="USE_THE_DEFAULT"
1303    
1304    #- local config file
1305    gm_local="genmake_local"
1306    
1307    G2ARGS=
1308    BASH=
1309  PWD=`pwd`  PWD=`pwd`
1310  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1311  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1312    EMBED_SRC=
1313    THISHOST=`hostname`
1314  THISCWD=`pwd`  THISCWD=`pwd`
1315  THISDATE=`date`  THISDATE=`date`
1316    THISUSER=`echo $USER`
1317    THISVER=
1318  MACHINE=`uname -a`  MACHINE=`uname -a`
1319  EXECUTABLE=  EXECUTABLE=
1320  EXEHOOK=  EXEHOOK=
1321  EXEDIR=  EXEDIR=
1322    IEEE=
1323    if test "x$MITGCM_IEEE" != x ; then
1324        IEEE=$MITGCM_IEEE
1325    fi
1326    FS=
1327    FS90=
1328    
1329    AUTODIFF_PKG_USED=f
1330    OPENAD=
1331    AD_OPTFILE=
1332    TAF=
1333    AD_TAF_FLAGS=
1334    FTL_TAF_FLAGS=
1335    SVD_TAF_FLAGS=
1336    TAF_EXTRA=
1337    TAMC=
1338    AD_TAMC_FLAGS=
1339    FTL_TAF_FLAGS=
1340    SVD_TAMC_FLAGS=
1341    TAMC_EXTRA=
1342    
1343    DIVA=
1344    MPIINCLUDEDIR=
1345    MPI_HEADER_FILES=
1346    LOCAL_MPI_HEADERS=
1347    
1348  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1349  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1350  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1351    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1352    
1353  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1354  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1355  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1356  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1357  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1358    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1359    
1360    #  The following are all related to adjoint/tangent-linear stuff
1361    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1362    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1363    gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1364    
1365    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1366    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1367    
1368    cat <<EOF
1369    
1370    GENMAKE :
1371    
1372    A program for GENerating MAKEfiles for the MITgcm project.
1373       For a quick list of options, use "genmake2 -h"
1374    or for more detail see the Developer's HOWTO manual at:
1375       http://mitgcm.org/public/docs.html
1376    
1377  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  EOF
1378    
1379    LOGFILE="genmake.log"
1380    #- clean-up previous genmake logfiles:
1381    rm -f genmake_state genmake_*optfile $LOGFILE
1382    
 echo  
1383  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="./gm_local"  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1384    
1385  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1386  #parse_options  #parse_options
   
1387  ac_prev=  ac_prev=
1388  for ac_option ; do  for ac_option in "$@" ; do
1389    
1390        G2ARGS="$G2ARGS \"$ac_option\""
1391    
1392      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1393      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 313  for ac_option ; do Line 1395  for ac_option ; do
1395          ac_prev=          ac_prev=
1396          continue          continue
1397      fi      fi
1398        
1399      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1400        
1401      case $ac_option in      case $ac_option in
1402            
1403          -help | --help | -h | --h)          -help | --help | -h | --h)
1404              usage ;;              usage ;;
1405            
1406          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1407              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1408          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1409              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1410          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1411              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1412            
1413            -oad | --oad)
1414                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1415            -adoptfile | --adoptfile | -adof | --adof)
1416                ac_prev=AD_OPTFILE ;;
1417            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1418                AD_OPTFILE=$ac_optarg ;;
1419    
1420          -pdepend | --pdepend)          -pdepend | --pdepend)
1421              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1422          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1423              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1424            
1425          -pdefault | --pdefault)          -pgroups | --pgroups)
1426              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1427          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1428              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1429            
1430          -make | --make | -m | --m)          -make | --make | -m | --m)
1431              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1432          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1433              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1434            
1435          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1436                ac_prev=BASH ;;
1437            -bash=* | --bash=*)
1438                BASH=$ac_optarg ;;
1439    
1440            -makedepend | --makedepend | -md | --md)
1441                ac_prev=MAKEDEPEND ;;
1442            -makedepend=* | --makedepend=* | -md=* | --md=*)
1443                MAKEDEPEND=$ac_optarg ;;
1444    
1445            -makefile | --makefile | -mf | --mf)
1446              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1447          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1448              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1449            
1450          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1451              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1452          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1453              PLATFORM=$ac_optarg ;;              echo
1454                        usage
1455                ;;
1456    
1457          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1458              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1459          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1460              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1461            
1462          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1463              ac_prev=MODS ;;              ac_prev=MODS ;;
1464          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1465              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1466            
1467          -disable | --disable)          -disable | --disable)
1468              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1469          -disable=* | --disable=*)          -disable=* | --disable=*)
1470              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1471            
1472          -enable | --enable)          -enable | --enable)
1473              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1474          -enable=* | --enable=*)          -enable=* | --enable=*)
1475              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1476            
1477          -noopt | --noopt)          -standarddirs | --standarddirs)
1478              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1479          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1480              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1481            
1482  #           -cpp | --cpp)  #           -cpp | --cpp)
1483  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1484  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1485  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1486                
1487            -cc | --cc)
1488                ac_prev=CC ;;
1489            -cc=* | --cc=*)
1490                CC=$ac_optarg ;;
1491    
1492          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1493              ac_prev=FC ;;              ac_prev=FC ;;
1494          -fc=* | --fc=*)          -fc=* | --fc=*)
1495              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1496            
1497            -fs | --fs)
1498                ac_prev=FS ;;
1499            -fs=* | --fs=*)
1500                FS=$ac_optarg ;;
1501    
1502            -fs90 | --fs90)
1503                ac_prev=FS90 ;;
1504            -fs90=* | --fs90=*)
1505                FS90=$ac_optarg ;;
1506    
1507            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1508                USE_R4=true ;;
1509    
1510          -ieee | --ieee)          -ieee | --ieee)
1511              IEEE=1 ;;              IEEE=true ;;
1512          -noieee | --noieee)          -noieee | --noieee)
1513              IEEE=0 ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1514                    -devel | --devel)
1515                IEEE=true ; DEVEL=true ;;
1516            -gsl | --gsl)
1517                GSL=true ;;
1518    
1519            -ts | --ts)
1520                TS=true ;;
1521            -papis | --papis)
1522                PAPIS=true ;;
1523            -pcls | --pcls)
1524                PCLS=true ;;
1525            -foolad | --foolad)
1526                FOOLAD=true ;;
1527            -papi | --papi)
1528                PAPI=true ;;
1529            -pcl | --pcl)
1530                PCL=true ;;
1531            -hpmt | --hpmt)
1532                HPMT=true ;;
1533    
1534          -mpi | --mpi)          -mpi | --mpi)
1535              MPI=1 ;;              MPI=true ;;
1536          -nompi | --nompi)          -mpi=* | --mpi=*)
1537              MPI=0 ;;              MPIPATH=$ac_optarg
1538                        MPI=true ;;
1539          -jam | --jam)  
1540              JAM=1 ;;          -omp | --omp)
1541          -nojam | --nojam)              OMP=true ;;
1542              JAM=0 ;;          -omp=* | --omp=*)
1543                        OMPFLAG=$ac_optarg
1544                OMP=true ;;
1545    
1546          -ds | --ds)          -ds | --ds)
1547              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1548            
1549            -extra_flag | --extra_flag)
1550                ac_prev=FEXTRAFLAGS ;;
1551            -extra_flag=* | --extra_flag=*)
1552                FEXTRAFLAGS=$ac_optarg ;;
1553    
1554            -taf_extra | --taf_extra)
1555                ac_prev=TAF_EXTRA ;;
1556            -taf_extra=* | --taf_extra=*)
1557                TAF_EXTRA=$ac_optarg ;;
1558    
1559            -tamc_extra | --tamc_extra)
1560                ac_prev=TAMC_EXTRA ;;
1561            -tamc_extra=* | --tamc_extra=*)
1562                TAMC_EXTRA=$ac_optarg ;;
1563    
1564            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1565                IGNORE_TIME="-DIGNORE_TIME" ;;
1566    
1567            -es | --es | -embed-source | --embed-source)
1568                EMBED_SRC=t ;;
1569    
1570          -*)          -*)
1571              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575          *)          *)
1576              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1577              usage              usage
1578              ;;              ;;
1579            
1580      esac      esac
1581        
1582  done  done
1583    
1584    #TMP=./genmk_$$
1585    #- try to put temporary files in system-local /tmp dir
1586    TMP=/tmp/genmk_$$
1587    touch $TMP ; retVal=$?
1588    if [ $retVal -eq 0 ] ; then
1589      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1590    else
1591      TMP=./genmk_$$
1592    fi
1593    rm -f $TMP
1594    #echo "  temp files: $TMP.*"
1595    
1596    printf "  getting local config information:  "
1597    if test -f $gm_local ; then
1598        echo "using $gm_local"
1599        . $gm_local
1600    else
1601        echo "none found"
1602    fi
1603    
1604    if test -f ./.genmakerc ; then
1605        echo
1606        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1607        echo "  file.  This file format is no longer supported.  For directions on"
1608        echo "  how to setup and use the new \"genmake2\" script, please see:"
1609        echo "    http://mitgcm.org/public/devel_HOWTO/"
1610        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1611        echo "WARNING: ignore \"./.genmakerc\" and continue."
1612        echo
1613    fi
1614    
1615    #  Find the MITgcm ${ROOTDIR}
1616  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1617      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1618        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1619          ROOTDIR=".."          ROOTDIR=".."
1620      else      else
1621          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1622              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1623                  ROOTDIR=$d                  ROOTDIR=$d
1624                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1625                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1626                  break                  break
1627              fi              fi
1628          done          done
# Line 445  if test ! -d ${ROOTDIR} ; then Line 1639  if test ! -d ${ROOTDIR} ; then
1639      exit 1      exit 1
1640  fi  fi
1641    
1642  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1643    version_file="${ROOTDIR}/doc/tag-index"
1644    if test -f $version_file ; then
1645        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1646    #-  remove ./BUILD_INFO.h file if older than version_file
1647        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1648            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1649            rm -f ./BUILD_INFO.h
1650        fi
1651    fi
1652    
1653    if test "x$MAKEFILE" = x ; then
1654        MAKEFILE="Makefile"
1655    fi
1656    
1657    echo "  getting OPTFILE information:"
1658  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1659      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1660          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1661          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1662          find_possible_configs          find_possible_optfile
1663      else      else
1664          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1665      fi      fi
# Line 458  fi Line 1667  fi
1667  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1668      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1669          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1670          source "$OPTFILE"          . "$OPTFILE"
1671          RETVAL=$?          RETVAL=$?
1672          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1673              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1674              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1675              exit 1              exit 1
1676          fi          fi
1677          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1678              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
1679          fi          fi
1680      else      else
1681          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 474  if test "x$OPTFILE" != xNONE ; then Line 1683  if test "x$OPTFILE" != xNONE ; then
1683      fi      fi
1684  fi  fi
1685    
1686  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:"
1687  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
1688        if test "x$MITGCM_AD_OF" != x ; then
1689            AD_OPTFILE=$MITGCM_AD_OF
1690        elif test "x$OPENAD" = x ; then
1691            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1692        else
1693            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1694        fi
1695    fi
1696    if test "x${AD_OPTFILE}" != xNONE ; then
1697        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1698            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1699            . "$AD_OPTFILE"
1700            RETVAL=$?
1701            if test "x$RETVAL" != x0 ; then
1702                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1703                echo "--please check that variable syntax is bash-compatible"
1704                exit 1
1705            fi
1706            if test "x$DUMPSTATE" = xt ; then
1707                cp -f $AD_OPTFILE "genmake_ad_optfile"
1708            fi
1709        else
1710            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1711            exit 1
1712        fi
1713    fi
1714    
1715    #====================================================================
1716    #  Set default values if not set by the optfile
1717    #
1718    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1719    #  either set defaults or complain and abort!
1720    if test ! "x$BASH" = x ; then
1721        # add a trailing space so that it works within the Makefile syntax (see below)
1722        BASH="$BASH "
1723    fi
1724  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1725      cat <<EOF 1>&2      cat <<EOF 1>&2
1726    
1727  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
1728    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1729    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1730    3) the "./gm_local" file    3) the "./genmake_local" file
1731  EOF  EOF
1732      exit 1      exit 1
1733  fi  fi
1734    if test "x$GET_FC_VERSION" != x ; then
1735      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1736      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1737      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1738      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1739      if test -s genmake_fc_vers1 ; then
1740        cat genmake_fc_vers1 >> $LOGFILE
1741      else
1742        cat genmake_fc_vers2 >> $LOGFILE
1743      fi
1744      echo "<-- compiler version ----" >> $LOGFILE
1745      rm -f genmake_fc_vers1 genmake_fc_vers2
1746    fi
1747    
1748    if test "x$CC" = x ; then
1749        look_for_C_compilers
1750    fi
1751    
1752  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1753      LINK=$FC      LINK=$FC
1754  fi  fi
1755    if test "x$MAKE" = x ; then
1756        MAKE="make"
1757    fi
1758  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1759      CPP="cpp"      CPP="cpp -traditional -P"
1760  fi  fi
1761  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
1762    #  The following is an ugly little hack to check for $CPP in /lib/ and
1763    #  it should eventually be replaced with a more general function that
1764    #  searches a combo of the user's path and a list of "usual suspects"
1765    #  to find the correct location for binaries such as $CPP.
1766    for i in " " "/lib/" ; do
1767        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1768    done
1769    #EH3 === UGLY ===
1770    echo "#define A a" | $CPP > test_cpp 2>&1
1771  RETVAL=$?  RETVAL=$?
1772  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1773      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 500  if test "x$RETVAL" != x0 ; then Line 1775  if test "x$RETVAL" != x0 ; then
1775  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
1776    
1777    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1778    2) the "./gm_local" file    2) the "./genmake_local" file
1779      3) with the CPP environment variable
1780    
1781  EOF  EOF
1782      exit 1      exit 1
1783  else  else
1784      rm -f test_cpp      rm -f test_cpp
1785  fi  fi
1786  if test "x$MAKEDEPEND" = x ; then  
1787      MAKEDEPEND=makedepend  look_for_makedepend
1788    
1789    #  Check that soft-link command is set and usable
1790    if test "x$LN" = x ; then
1791        LN="ln -s"
1792    fi
1793    echo "test" > genmake_test_ln
1794    $LN genmake_test_ln genmake_tlink
1795    RETVAL=$?
1796    if test "x$RETVAL" != x0 ; then
1797        cat <<EOF 1>&2
1798    
1799    Error: The command "$LN" failed -- please specify a working soft-link
1800      command in the optfile.
1801    
1802    EOF
1803        exit 1
1804    fi
1805    test -L genmake_tlink > /dev/null 2>&1
1806    RETVAL=$?
1807    if test "x$RETVAL" = x0 ; then
1808        HAVE_TEST_L=t
1809    fi
1810    rm -f genmake_test_ln genmake_tlink
1811    
1812    #  Check for broken *.F/*.f handling and fix if possible
1813    check_for_broken_Ff
1814    
1815    if test ! "x$MPI" = x ; then
1816          echo "  Turning on MPI cpp macros"
1817          DEFINES="$DEFINES -DALLOW_USE_MPI"
1818    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1819    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1820    fi
1821    if test ! "x$OMP" = x ; then
1822          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1823          FFLAGS="$FFLAGS $OMPFLAG"
1824          F90FLAGS="$F90FLAGS $OMPFLAG"
1825          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1826    fi
1827    
1828    if test ! "x$USE_R4" = x ; then
1829          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1830          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1831    fi
1832    
1833    if test ! "x$TS" = x ; then
1834          echo "  Turning on timing per timestep"
1835          if test ! "x$FOOLAD" = x ; then
1836                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1837          else
1838                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1839          fi
1840          PACKAGES="$PACKAGES showflops"
1841    fi
1842    if test ! "x$PAPIS" = x ; then
1843          echo "  Turning on PAPI flop summary per timestep"
1844          echo "  Please make sure PAPIINC, PAPILIB are defined"
1845          if test ! "x$FOOLAD" = x ; then
1846                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1847          else
1848                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1849          fi
1850          INCLUDES="$INCLUDES $PAPIINC"
1851          LIBS="$LIBS $PAPILIB"
1852          PACKAGES="$PACKAGES showflops"
1853    fi
1854    if test ! "x$PCLS" = x ; then
1855          echo "  Turning on PCL counter summary per timestep"
1856          echo "  Please make sure PCLINC, PCLLIB are defined"
1857          if test ! "x$FOOLAD" = x ; then
1858                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1859          else
1860                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1861          fi
1862          INCLUDES="$INCLUDES $PCLINC"
1863          LIBS="$LIBS $PCLLIB"
1864          PACKAGES="$PACKAGES showflops"
1865    fi
1866    if test ! "x$PAPI" = x ; then
1867          if test ! "x$PAPIS" = x ; then
1868              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1869              echo "  Sticking with PAPI flop summary per timestep!"
1870          else
1871              echo "  Turning on performance analysis with PAPI"
1872              echo "  Please make sure PAPIINC, PAPILIB are defined"
1873              DEFINES="$DEFINES -DUSE_PAPI"
1874              INCLUDES="$INCLUDES $PAPIINC"
1875              LIBS="$LIBS $PAPILIB"
1876          fi
1877    fi
1878    if test ! "x$PCL" = x ; then
1879          if test ! "x$PCLS" = x ; then
1880              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1881              echo "  Sticking with PCL flop summary per timestep!"
1882          else
1883              echo "  Turning on performance analysis with PCL"
1884              echo "  Please make sure PCLINC, PCLLIB are defined"
1885              DEFINES="$DEFINES -DUSE_PCL"
1886              INCLUDES="$INCLUDES $PCLINC"
1887              LIBS="$LIBS $PCLLIB"
1888          fi
1889    fi
1890    if test ! "x$HPMT" = x ; then
1891          if test ! "x$PAPI" = x ; then
1892              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1893              echo "  Sticking with PAPI!"
1894          else
1895            if test ! "x$PCL" = x ; then
1896              echo "  PCL and the HPM Toolkit cannot co-exist!"
1897              echo "  Sticking with PCL!"
1898            else
1899              echo "  Turning on performance analysis with the HPM Toolkit"
1900              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1901              DEFINES="$DEFINES -DUSE_LIBHPM"
1902              INCLUDES="$INCLUDES $HPMTINC"
1903              LIBS="$LIBS $HPMTLIB"
1904            fi
1905          fi
1906    fi
1907    if test ! "x$GSL" = x ; then
1908          echo "  Turning on use of GSL to control floating point calculations"
1909          echo "  Please make sure GSLINC, GSLLIB are defined"
1910          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1911          INCLUDES="$INCLUDES $GSLINC"
1912          LIBS="$LIBS $GSLLIB"
1913    fi
1914    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1915    if test ! "x$USE_EXTENDED_SRC" = x ; then
1916          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1917          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1918    fi
1919    
1920    printf "\n===  Checking system libraries  ===\n"
1921    printf "  Do we have the system() command using $FC...  "
1922    cat > genmake_tcomp.$FS <<EOF
1923          program hello
1924          call system('echo hi')
1925          end
1926    EOF
1927    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1928    RETVAL=$?
1929    if test "x$RETVAL" = x0 ; then
1930        HAVE_SYSTEM=t
1931        DEFINES="$DEFINES -DHAVE_SYSTEM"
1932        echo "yes"
1933    else
1934        HAVE_SYSTEM=
1935        echo "no"
1936    fi
1937    rm -f genmake_tcomp*
1938    
1939    printf "  Do we have the fdate() command using $FC...  "
1940    cat > genmake_tcomp.$FS <<EOF
1941          program hello
1942          CHARACTER*(128) string
1943          string = ' '
1944          call fdate( string )
1945          print *, string
1946          end
1947    EOF
1948    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1949    RETVAL=$?
1950    if test "x$RETVAL" = x0 ; then
1951        HAVE_FDATE=t
1952        DEFINES="$DEFINES -DHAVE_FDATE"
1953        echo "yes"
1954    else
1955        HAVE_FDATE=
1956        echo "no"
1957    fi
1958    rm -f genmake_tcomp*
1959    
1960    printf "  Do we have the etime() command using $FC...  "
1961    cat > genmake_tcomp.$FS <<EOF
1962          program hello
1963          REAL*4 ACTUAL, TARRAY(2)
1964          EXTERNAL ETIME
1965          REAL*4 ETIME
1966          actual = etime( tarray )
1967          print *, tarray
1968          end
1969    EOF
1970    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1971    RETVAL=$?
1972    if test "x$RETVAL" = x0 ; then
1973        HAVE_ETIME=t
1974        DEFINES="$DEFINES -DHAVE_ETIME"
1975        echo "yes"
1976    else
1977        HAVE_ETIME=
1978        echo "no"
1979    fi
1980    rm -f genmake_tcomp*
1981    
1982    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1983    check_HAVE_CLOC
1984    if test "x$HAVE_CLOC" != x ; then
1985        DEFINES="$DEFINES -DHAVE_CLOC"
1986        echo "yes"
1987    else
1988        echo "no"
1989        if test "x$EMBED_SRC" = xt ; then
1990            echo "    WARNING: you requested file embedding but it has"
1991            echo "      been disabled since C code cannot be called"
1992            EMBED_SRC=
1993        fi
1994    fi
1995    rm -f genmake_t*
1996    
1997    printf "  Can we unlimit the stack size using $FC...  "
1998    check_HAVE_SETRLSTK
1999    if test "x$HAVE_SETRLSTK" = xt ; then
2000        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2001        echo "yes"
2002    else
2003        echo "no"
2004    fi
2005    rm -f genmake_t*
2006    
2007    printf "  Can we register a signal handler using $FC...  "
2008    check_HAVE_SIGREG
2009    if test "x$HAVE_SIGREG" = xt ; then
2010        DEFINES="$DEFINES -DHAVE_SIGREG"
2011        echo "yes"
2012    else
2013        echo "no"
2014    fi
2015    rm -f genmake_t*
2016    
2017    printf "  Can we use stat() through C calls...  "
2018    check_HAVE_STAT
2019    if test "x$HAVE_STAT" != x ; then
2020        DEFINES="$DEFINES -DHAVE_STAT"
2021        echo "yes"
2022    else
2023        echo "no"
2024    fi
2025    rm -f genmake_t*
2026    
2027    printf "  Can we create NetCDF-enabled binaries...  "
2028    check_netcdf_libs
2029    if test "x$HAVE_NETCDF" != x ; then
2030        DEFINES="$DEFINES -DHAVE_NETCDF"
2031        echo "yes"
2032    else
2033        echo "no"
2034    fi
2035    
2036    printf "  Can we create LAPACK-enabled binaries...  "
2037    check_lapack_libs
2038    if test "x$HAVE_LAPACK" != x ; then
2039        DEFINES="$DEFINES -DHAVE_LAPACK"
2040        echo "yes"
2041    else
2042        echo "no"
2043    fi
2044    
2045    printf "  Can we call FLUSH intrinsic subroutine...  "
2046    check_HAVE_FLUSH
2047    if test "x$HAVE_FLUSH" = xt ; then
2048        DEFINES="$DEFINES -DHAVE_FLUSH"
2049        echo "yes"
2050    else
2051        echo "no"
2052    fi
2053    
2054    DEFINES="$DEFINES $IGNORE_TIME"
2055    if test "x$EMBED_SRC" = xt ; then
2056        build_embed_encode
2057    fi
2058    if test "x$EMBED_SRC" = xt ; then
2059        ENABLE="$ENABLE embed_files"
2060    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2061  fi  fi
2062    
2063  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2064  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2065  for d in $MODS ; do  for d in $MODS ; do
2066      if test ! -d $d ; then      if test ! -d $d ; then
2067          echo          echo
2068          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2069          exit 1          exit 1
2070      else      else
2071          echo -n " $d"          printf "$d "
2072          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2073          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2074      fi      fi
2075  done  done
2076  echo  echo
2077    
2078  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2079      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2080  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2081    
2082  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2083      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2084        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2085          EXEDIR=../exe          EXEDIR=../exe
2086      else      else
2087          EXEDIR=.          EXEDIR=.
# Line 549  if test "x${TOOLSDIR}" = x ; then Line 2096  if test "x${TOOLSDIR}" = x ; then
2096      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2097  fi  fi
2098  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2099      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2100      exit 1      exit 1
2101  fi  fi
2102  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2103      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2104        RETVAL=$?
2105        if test "x${RETVAL}" = x0 ; then
2106            S64='$(TOOLSDIR)/set64bitConst.sh'
2107        else
2108            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2109            RETVAL=$?
2110            if test "x${RETVAL}" = x0 ; then
2111                S64='$(TOOLSDIR)/set64bitConst.csh'
2112            else
2113                cat <<EOF
2114    
2115    ERROR: neither of the two default scripts:
2116    
2117        ${TOOLSDIR}/set64bitConst.sh
2118        ${TOOLSDIR}/set64bitConst.csh
2119    
2120      are working so please check paths or specify (with \$S64) a
2121      working version of this script.
2122    
2123    EOF
2124                exit 1
2125            fi
2126        fi
2127  fi  fi
2128    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2129    
2130  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2131    
2132    #  Set Standard Code Directories:
2133    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2134        STANDARDDIRS="eesupp model"
2135    fi
2136    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2137    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2138    ckM=$?
2139    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2140    ckE=$?
2141    if test $ckM = 0 -a $ckE = 1 ; then
2142        STANDARDDIRS="$STANDARDDIRS eesupp"
2143    fi
2144    
2145  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2146  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2147  #  they appear as regular source code  #  they appear as regular source code
2148  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2149      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2150      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2151        ) > make_eesupp.errors 2>&1
2152      RETVAL=$?      RETVAL=$?
2153      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2154          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2155      else      else
2156          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2157          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2158          exit 1          exit 1
2159      fi      fi
2160  fi  fi
2161    
2162    #same for pkg/exch2 and pkg/regrid
2163    for pdir in exch2 regrid ; do
2164        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2165            echo "  Making source files in pkg/${pdir} from templates"
2166            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2167            ) > make_${pdir}.errors 2>&1
2168            RETVAL=$?
2169            if test "x${RETVAL}" = x0 ; then
2170                rm -f make_${pdir}.errors
2171            else
2172                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2173                cat make_${pdir}.errors 1>&2
2174                exit 1
2175            fi
2176        fi
2177    done
2178    
2179  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2180  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2181      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2182      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2183          PDEPEND=$tmp  fi
2184      else  if  test "x${PKG_DEPEND}" = x ; then
2185          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2186          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2187  else  else
2188      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2189          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2190          exit 1          exit 1
2191      fi      fi
2192        echo "  getting package dependency info from  $PKG_DEPEND"
2193    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2194        get_pdepend_list $PKG_DEPEND
2195  fi  fi
2196  echo "  getting package dependency info from  $PDEPEND"  
2197  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2198  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2199  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2200      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2201      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2202  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2203  if test ! "x${RETVAL}" = x0 ; then  fi
2204      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2205      exit 1          echo "Warning:  No package groups information was specified."
2206            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2207    else
2208        if test ! -r ${PKG_GROUPS} ; then
2209            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2210            exit 1
2211        fi
2212        echo "  getting package groups info from      $PKG_GROUPS"
2213  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2214    
2215  echo  -n "  checking default package list:  "  #  Search for packages to compile.
2216  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
2217      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
2218    if test "x${PKG_LIST}" = x ; then
2219        for i in "." $MODS ; do
2220            if test -r $i"/packages.conf" ; then
2221                    PKG_LIST=$i"/packages.conf"
2222                    break
2223            fi
2224        done
2225  fi  fi
2226  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PKG_LIST}" = x ; then
2227      echo "default packages file disabled"      pkg_list='default_pkg_list'
2228        if test "x${PKG_GROUPS}" = x ; then
2229            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2230            exit 1
2231        fi
2232  else  else
2233      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2234          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2235          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2236      else      else
2237          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2238          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2239          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2240          RETVAL=$?          RETVAL=$?
2241          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2242              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2243              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2244              exit 1              exit 1
2245          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
2246      fi      fi
2247  fi  fi
2248    for i in $pkg_list ; do
2249        PACKAGES="$PACKAGES $i"
2250    done
2251    echo     "    before group expansion packages are:$PACKAGES"
2252    if test "x${PKG_GROUPS}" != x ; then
2253        RET=1
2254        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2255        echo "    after group expansion packages are: $PACKAGES"
2256    fi
2257    
2258  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2259    echo "" > $TMP.pack
2260    for i in $PACKAGES ; do
2261        echo $i >> $TMP.pack
2262    done
2263    for i in `grep  "-" $TMP.pack` ; do
2264        j=`echo $i | sed 's/[-]//'`
2265        DISABLE="$DISABLE $j"
2266    done
2267  pack=  pack=
2268  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2269      addit="t"      addit="t"
# Line 645  for p in $PACKAGES ; do Line 2278  for p in $PACKAGES ; do
2278  done  done
2279  PACKAGES="$pack"  PACKAGES="$pack"
2280  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2281  rm -f ./.tmp_pack  echo "" > $TMP.pack
2282  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2283    # Test if each explicitly referenced package exists
2284  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2285      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2286          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2287            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2288          exit 1          exit 1
2289      fi      fi
2290      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2291  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2292  PACKAGES=  PACKAGES=
2293  for i in $pack ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2294      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2295  done  done
2296  echo "    packages are:  $PACKAGES"  rm -f $TMP.pack
2297    echo "    packages are: $PACKAGES"
2298    
2299  echo "  applying package dependency rules"  #  Check for package MNC: if NetCDF is available, then build the MNC
2300  ck=  #  template files ; otherwise, delete mnc from the list of packages.
2301  while test "x$ck" != xtt ; do  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2302    mnc_in=$?
2303    if test "x$HAVE_NETCDF" != xt ; then
2304        if test "x$mnc_in" = x0 ; then
2305            cat <<EOF
2306    *********************************************************************
2307    WARNING: the "mnc" package was enabled but tests failed to compile
2308      NetCDF applications.  Please check that:
2309    
2310      1) NetCDF is correctly installed for this compiler and
2311      2) the LIBS variable (within the "optfile") specifies the correct
2312           NetCDF library to link against.
2313    
2314      Due to this failure, the "mnc" package is now DISABLED.
2315    *********************************************************************
2316    EOF
2317            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2318            DISABLE="$DISABLE mnc"
2319        else
2320        #  this prevent to add mnc (due to pdepend rules) if not available
2321            DISABLE="$DISABLE mnc"
2322        fi
2323    else
2324        # we have NetCDF, we try to build MNC template files
2325        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2326        RETVAL=$?
2327        if test "x${RETVAL}" = x0 ; then
2328            rm -f make_mnc.errors
2329        else
2330            echo "Error: problem encountered while building source files in pkg/mnc:"
2331            cat make_mnc.errors 1>&2
2332            if test "x$mnc_in" = x0 ; then
2333                exit 1
2334            else
2335                DISABLE="$DISABLE mnc"
2336            fi
2337        fi
2338    fi
2339    
2340    #  Check for package PROFILES: if NetCDF is not available,
2341    #  then delete profiles from the list of available packages.
2342    if test "x$HAVE_NETCDF" != xt ; then
2343        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2344        RETVAL=$?
2345        if test "x$RETVAL" = x0 ; then
2346            cat <<EOF
2347    *********************************************************************
2348    WARNING: the "profiles" package was enabled but tests failed to
2349      compile NetCDF applications.  Please check that:
2350    
2351      1) NetCDF is correctly installed for this compiler and
2352      2) the LIBS variable (within the "optfile") specifies the correct
2353           NetCDF library to link against.
2354    
2355      Due to this failure, the "profiles" package is now DISABLED.
2356    *********************************************************************
2357    EOF
2358            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2359            DISABLE="$DISABLE profiles"
2360        else
2361        #  this prevent to add profiles (due to pdepend rules) if not available
2362            DISABLE="$DISABLE profiles"
2363        fi
2364    fi
2365    
2366    #  Make sure the openad package is enabled if using OpenAD
2367    if test "x$OPENAD" != x ; then
2368        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2369        RETVAL=$?
2370        if test "x$RETVAL" != x0 ; then
2371            cat <<EOF
2372    
2373    *********************************************************************
2374    ERROR: when generating an adjoint with OpenAD, the openad package
2375      must be enabled.  Please add it to packages.conf.
2376    *********************************************************************
2377    
2378    EOF
2379            exit 1
2380        fi
2381    fi
2382    
2383    if  test "x${PKG_DEPEND}" != x ; then
2384      echo "  applying package dependency rules"
2385      ck=
2386      while test "x$ck" != xtt ; do
2387      i=0      i=0
2388      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2389      rtot=$nname      rtot=$nname
2390      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2391    
2392          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2393          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 680  while test "x$ck" != xtt ; do Line 2399  while test "x$ck" != xtt ; do
2399                  pin="t"                  pin="t"
2400              fi              fi
2401          done          done
2402            #  or in the current $STANDARDDIRS list?
2403            for p in $STANDARDDIRS ; do
2404                if test "x$p" = "x$pname" ; then pin="t" ; fi
2405            done
2406    
2407          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2408          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 702  while test "x$ck" != xtt ; do Line 2425  while test "x$ck" != xtt ; do
2425    
2426          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2427          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2428                #echo "   " $pname ": need to add :" $dname
2429              in_dis="f"              in_dis="f"
2430              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2431                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 722  while test "x$ck" != xtt ; do Line 2446  while test "x$ck" != xtt ; do
2446          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2447          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2448              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2449              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2450              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2451              exit 1              exit 1
2452          fi          fi
2453          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2454            #i=$(( $i + 1 ))
2455      done      done
2456      ck=$ck"t"      ck=$ck"t"
2457  done    done
2458  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2459    fi
2460  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2461      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2462      if test -d $adr ; then      if test -d $adr ; then
2463          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2464          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2465            if test "x$i" = xautodiff ; then
2466                AUTODIFF_PKG_USED=t
2467            fi
2468      else      else
2469          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2470          exit 1          exit 1
2471      fi      fi
2472  done  done
2473    
2474  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2475  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2476  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2477  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2478  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2479  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2480  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2481  all_pack=  all_pack=
2482    DISABLED_PACKAGES=
2483  for n in $names ; do  for n in $names ; do
2484      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2485          has_pack="f"          has_pack="f"
# Line 813  for n in $names ; do Line 2490  for n in $names ; do
2490              fi              fi
2491          done          done
2492          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2493              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2494              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2495          fi          fi
2496      fi      fi
2497  done  done
2498  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2499  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2500      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2501      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2502    #eh3 DEFINES="$DEFINES -D$def"
2503    
2504  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2505      case $i in      case $i in
2506          aim_v23)          aim_v23)
2507              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2508                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2509              ;;              ;;
2510      esac      esac
2511  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2512    
2513  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2514    
2515  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2516  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2517  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2518  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2519      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2520      if test ! -d $adr ; then          if test ! -d $adr ; then
2521          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2522          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2523          exit 1              exit 1
2524      else          else
2525          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2526            fi
2527            adr="$ROOTDIR/$d/inc"
2528            if test ! -d $adr ; then
2529                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2530                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2531                exit 1
2532            else
2533                INCLUDEDIRS="$INCLUDEDIRS $adr"
2534            fi
2535        done
2536    fi
2537    
2538    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2539    echo "    of \"#define \"-type statements that are no longer allowed:"
2540    CPP_OPTIONS=
2541    CPP_EEOPTIONS=
2542    spaths=". $INCLUDEDIRS"
2543    names=`ls -1 "$ROOTDIR/pkg"`
2544    for i in $spaths ; do
2545        try="$i/CPP_OPTIONS.h"
2546        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2547            echo "    found CPP_OPTIONS=\"$try\""
2548            CPP_OPTIONS="$try"
2549            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2550            for n in $names ; do
2551                test_for_package_in_cpp_options $CPP_OPTIONS $n
2552            done
2553      fi      fi
2554      adr="$ROOTDIR/$d/inc"      try="$i/CPP_EEOPTIONS.h"
2555      if test ! -d $adr ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2556          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          echo "    found CPP_EEOPTIONS=\"$try\""
2557          echo "  is correct and that you correctly specified the STANDARDDIRS option"          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2558          exit 1  #**** not yet enabled ****
2559      else  #        test_for_mpi_in_cpp_eeoptions $try
2560          INCLUDEDIRS="$INCLUDEDIRS $adr"  #**** not yet enabled ****
2561            CPP_EEOPTIONS="$try"
2562      fi      fi
2563  done  done
2564    if test "x$CPP_OPTIONS" = x ; then
2565        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2566        exit 1
2567    fi
2568    
2569    #  Here, we build the list of files to be "run through" the adjoint
2570    #  compiler.
2571    if test -f $TMP.adSrcFiles ; then
2572        rm -f $TMP.adSrcFiles
2573    fi
2574    echo "  Creating the list of files for the adjoint compiler."
2575    touch $TMP.adSrcFiles
2576    for i in $SOURCEDIRS ; do
2577        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2578        for j in $list_files ; do
2579            cat $i/$j >> $TMP.adSrcFiles
2580        done
2581    done
2582    if test ! "x"$FS = "x.f" ; then
2583        cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2584        mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2585    fi
2586    
2587  echo  echo
2588  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2589  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2590  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2591      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2592          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2593      fi      fi
2594  done  done
2595    
2596    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2597        if test ! "x$MPIINCLUDEDIR" = x ; then
2598            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2599            #   checking for additional included headers (in case of chain of included
2600            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2601            mpi_headers_do_local_copy
2602        fi
2603    fi
2604    
2605  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2606  rm -rf .links.tmp  rm -rf $TMP.links
2607  mkdir .links.tmp  mkdir $TMP.links
2608  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2609  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2610  echo -n 'SRCFILES = '    > srclist.inc      echo
2611  echo -n 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2612  echo -n 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2613  echo -n 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2614        echo "   not working.  Please try setting your umask to something"
2615        echo "   sane such as:"
2616        echo
2617        echo "      umask 0002"
2618        echo
2619        echo "   and please verify that you have the proper permissions for"
2620        echo "   creating sub-directories and then reading files created"
2621        echo "   within them."
2622        echo
2623        exit 1
2624    fi
2625    rm -f $TMP.links/foo
2626    
2627    if test "x$OPENAD" != x ; then
2628        OAD_DONT_COMPILE="/dev/null"
2629        OAD_DONT_TRANSFORM="/dev/null"
2630        OAD_KEEP_ORIGINAL="/dev/null"
2631        OAD_CB2M_FILES="/dev/null"
2632        OADTOOLS="$TOOLSDIR/OAD_support"
2633        echo "  looking for dontCompile file:  "
2634        for i in "." $MODS $OADTOOLS ; do
2635            if test -r $i"/dontCompile" ; then
2636                OAD_DONT_COMPILE=$i"/dontCompile"
2637                echo "     found $OAD_DONT_COMPILE"
2638                break
2639            fi
2640        done
2641        echo "  looking for dontTransform file:  "
2642        for i in "." $MODS $OADTOOLS ; do
2643            if test -r $i"/dontTransform" ; then
2644                OAD_DONT_TRANSFORM=$i"/dontTransform"
2645                echo "     found $OAD_DONT_TRANSFORM"
2646                break
2647            fi
2648        done
2649        echo "  looking for keepOriginal file:  "
2650        for i in "." $MODS $OADTOOLS ; do
2651            if test -r $i"/keepOriginal" ; then
2652                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2653                echo "     found $OAD_KEEP_ORIGINAL"
2654                break
2655            fi
2656        done
2657        echo "  looking for cb2mFiles:  "
2658        for i in "." $MODS $OADTOOLS ; do
2659            if test -r $i"/cb2mFiles" ; then
2660                OAD_CB2M_FILES=$i"/cb2mFiles"
2661                echo "     found $OAD_CB2M_FILES"
2662                break
2663            fi
2664        done
2665        echo "   OpenAD exceptions:  "
2666    fi
2667    
2668    echo "# This section creates symbolic links" > $TMP.srclinks
2669    echo "" >> $TMP.srclinks
2670    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2671    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2672    printf 'C_SRC_FILES = '   > $TMP.csrclist
2673    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2674    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2675    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2676  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2677  for d in $alldirs ; do  for d in $alldirs ; do
2678      deplist=      deplist=
2679      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2680      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2681        if test "x$OPENAD" != x ; then
2682            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2683        fi
2684      for sf in $sfiles ; do      for sf in $sfiles ; do
2685          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2686              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2687                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2688                  touch .links.tmp/$sf                  case $d/$sf in
2689                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2690                  case $extn in                          ignore_f=t
2691                      F)                          ;;
2692                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2693                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2694                            ;;
2695                      ./FC_NAMEMANGLE.h)
2696                            ignore_f=t
2697                            ;;
2698                      ./BUILD_INFO.h)
2699                            ignore_f=t
2700                            ;;
2701                      ./EMBEDDED_FILES.h)
2702                            ignore_f=t
2703                            ;;
2704                      *)
2705                            #  For the local directory *ONLY*,
2706                            #  ignore all soft-links
2707                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2708                                ignore_f=t
2709                            else
2710                                touch $TMP.links/$sf
2711                                deplist="$deplist $sf"
2712                            fi
2713                            ;;
2714                    esac
2715                    if test "x$ignore_f" = xf ; then
2716                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2717                        case $extn in
2718                          F)
2719                            echo    " \\"  >> $TMP.F77srclist
2720                            printf " $sf" >> $TMP.F77srclist
2721                            if test "x$OPENAD" = x ; then
2722                                basename=${sf%%.F}
2723                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2724                                if test -z "$isAD" ; then
2725                                    echo    " \\"  >> $TMP.nonADF77srclist
2726                                    printf " $sf" >> $TMP.nonADF77srclist
2727                                fi
2728                            else #- OpenAD case:
2729                                basename=${sf%%.F}
2730                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2731                                if test -z "$isAD" ; then
2732                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2733                                    if test -z "$toBeIgnored" ; then
2734                                        echo    " \\"  >> $TMP.nonADF77srclist
2735                                        printf " $sf" >> $TMP.nonADF77srclist
2736                                    else
2737                                        echo "    not to be compiled   :  $sf"
2738                                    fi
2739                                else # file is initially listed as an AD file we want to exclude it
2740                                     # or we want to retain the untransformed version
2741                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2742                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2743                                    if test -n "$notToBeTransformed"; then
2744                                        echo "    not to be transformed:  $sf"
2745                                    fi
2746                                    if test -n "$untransformedVersionToBeKept" ; then
2747                                        echo "    original to be kept  :  $sf"
2748                                    fi
2749                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2750                                        echo    " \\"  >> $TMP.nonADF77srclist
2751                                        printf " $sf" >> $TMP.nonADF77srclist
2752                                    fi
2753                                fi
2754                            fi
2755                          ;;                          ;;
2756                      F90)                      F90)
2757                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2758                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2759                          ;;                          ;;
2760                      c)                      c)
2761                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2762                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2763                          ;;                          ;;
2764                      h)                      h)
2765                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2766                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2767                          ;;                          ;;
2768                  esac                      flow)
2769                            echo    " \\"  >> $TMP.ad_flow_files
2770                            printf " $sf" >> $TMP.ad_flow_files
2771                            ;;
2772                       esac
2773                    fi
2774              fi              fi
2775          fi          fi
2776      done      done
2777      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2778          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2779          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2780          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2781          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2782    # We need to make sure that the link isn't already there.
2783    # This may happen when make thinks that a header file has to be "remade"
2784    # because a module it depends on has changed.  In this case we do nothing.
2785            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2786          fi
2787      fi      fi
2788  done  done
2789  rm -rf .links.tmp  rm -rf $TMP.links
2790  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2791  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2792  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2793  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2794    echo "" >> $TMP.hsrclist
2795    echo "" >> $TMP.ad_flow_files
2796    
2797    CMDLINE=$0
2798    for xx in "$@" ; do nw=`echo $xx | wc -w`
2799        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2800                            else CMDLINE="$CMDLINE '$xx'" ; fi
2801    done
2802    
2803  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2804      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2805  fi  fi
2806  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2807  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 952  echo "#    $MACHINE" >> $MAKEFILE Line 2809  echo "#    $MACHINE" >> $MAKEFILE
2809  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2810  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2811  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2812  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2813  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2814  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2815    
2816    EXE_AD=$EXECUTABLE"_ad"
2817    EXE_FTL=$EXECUTABLE"_ftl"
2818    EXE_SVD=$EXECUTABLE"_svd"
2819    
2820  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2821  #  #
2822    # OPTFILE="$OPTFILE"
2823    #
2824  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2825  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2826  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 967  cat >>$MAKEFILE <<EOF Line 2831  cat >>$MAKEFILE <<EOF
2831  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2832  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2833  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2834  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2835  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2836  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 976  cat >>$MAKEFILE <<EOF Line 2838  cat >>$MAKEFILE <<EOF
2838  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2839    
2840  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2841  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2842  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2843  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2844  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2845  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2846  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2847    OADTOOLS    = ${OADTOOLS}
2848    
2849    #eh3  new defines for the adjoint work
2850    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2851    EXE_AD      = ${EXE_AD}
2852    EXE_FTL     = ${EXE_FTL}
2853    EXE_SVD     = ${EXE_SVD}
2854    
2855    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2856    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2857    
2858    # These files are created by Makefile
2859    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2860  EOF  EOF
2861    
2862  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2863        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2864    else
2865        echo "EMBEDDED_FILES = " >>$MAKEFILE
2866    fi
2867    
2868    # extract default cpp search path so we can pass it to makedepend
2869    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2870    
2871  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2872  # Unix ln (link)  # Unix ln (link)
2873  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2874  # Dependency generator  # Dependency generator
2875  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2876  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1000  KPP = ${KPP} Line 2879  KPP = ${KPP}
2879  FC = ${FC}  FC = ${FC}
2880  # Fortran compiler  # Fortran compiler
2881  F90C = ${F90C}  F90C = ${F90C}
2882    # C compiler
2883    CC = ${CC}
2884  # Link editor  # Link editor
2885  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2886    
2887  # Defines for CPP  # Defines for CPP
2888  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2889  # Includes for CPP  # Includes for CPP
2890  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2891    # default CPP includes for makedepend
2892    CPPINCLUDES = ${CPPINCLUDES}
2893  # Flags for KPP  # Flags for KPP
2894  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2895  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2896  # Optim./debug for FC  # Optim./debug for FC
2897  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2898  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2899  # Optim./debug for FC  # Optim./debug for FC
2900  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2901  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2902    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2903  # Flags for CC  # Flags for CC
2904  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2905  # Files that should not be optimized  # Files that should not be optimized
2906  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2907  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2908  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2909  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2910  # Name of the Mekfile  # Name of the makefile
2911  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2912    # Name of the make program
2913    MAKE = ${MAKE}
2914    
2915  EOF  EOF
2916    
2917  cat srclist.inc    >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2918  cat csrclist.inc   >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2919  cat f90srclist.inc >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2920  cat hlist.inc      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2921  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2922  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2923  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2924    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2925  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2926    echo >> $MAKEFILE
2927    
2928    # add definitions for preprocessed sources
2929    # and note that not all systems allow case sensitive extensions
2930    # hence the $FS and $FS90 here.
2931    # for fixed format f90 files we use ff90 or FF90 resp
2932    # but these are not expected to be the original source files
2933    
2934    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2935    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2936    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2937    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2938    echo >> $MAKEFILE
2939    echo '.SUFFIXES:' >> $MAKEFILE
2940    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2941    
2942  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2943    
2944  .SUFFIXES:  all: fwd_exe_target
2945  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2946            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2947            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2948            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2949            @-rm -f ad_config.template
2950            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2951    
2952  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2953  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2954          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2955    
2956  depend:  depend:
2957          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2958          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2959          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2960            -rm -f makedepend.out
2961    
2962    lib: libmitgcmuv.a
2963    
2964    libmitgcmuv.a: \$(OBJFILES)
2965            ar rcv libmitgcmuv.a \$(OBJFILES)
2966            ar d   libmitgcmuv.a main.o
2967    
2968  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  obj: \$(OBJFILES)
2969    
2970  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2971    
2972  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2973    
2974    # remove most of the files that "make" generates
2975  clean:  clean:
2976          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2977            -rm -rf *.o
2978            -rm -rf *.$FS *.flowdir
2979            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2980    
2981    # remove most of the files that "make" and "make depend" generate
2982  Clean:  Clean:
2983          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2984          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2985          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2986            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2987    
2988    # remove also the executable, files that "genmake2" generates (except Makefile)
2989    #         and output from a run (plus log files from testreport)
2990  CLEAN:  CLEAN:
2991          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2992            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2993            -rm -f $LOGFILE genmake_state genmake_*optfile
2994            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2995            -rm -rf mpi_headers mnc_test_*
2996          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2997          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2998          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2999          -rm -f \$(EXECUTABLE)          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3000            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3001            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3002            -rm -f oad_cp.[0-9][0-9][0-9].?????
3003    
3004  makefile:  makefile:
3005          ${0} $@          $THIS_SCRIPT $G2ARGS
3006  cleanlinks:  cleanlinks:
3007          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3008    
3009  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
3010  .F.f:  ${PACKAGES_DOT_H}:
3011          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3012  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3013    AD_CONFIG.h:
3014            @echo Creating \$@ ...
3015            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3016    FC_NAMEMANGLE.h:
3017            @echo Creating \$@ ...
3018            echo "$FC_NAMEMANGLE" > \$@
3019    
3020    BUILD_INFO.h:
3021            @echo Creating \$@ ...
3022    EOF
3023    
3024    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3025    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3026    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3027    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3028    
3029    if test "x$EMBED_SRC" = xt ; then
3030        cat >>$MAKEFILE <<EOF
3031    
3032    decode_files.o : EMBEDDED_FILES.h
3033    
3034    ##  \$(F77_PP_SRC_FILES)
3035    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3036            @echo Creating \$@ ...
3037            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3038            -rm -f all_fF.tar.gz
3039            -gzip all_fF.tar
3040    
3041    EMBEDDED_FILES.h : all_fF.tar.gz
3042            @echo Creating \$@ ...
3043            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3044    
3045    EOF
3046    fi
3047    
3048    cat >>$MAKEFILE <<EOF
3049    
3050    # The normal chain of rules is (  .F - .$FS - .o  )
3051    
3052    ## This nullifies any default implicit rules concerning these two file types:
3053    ## %.o : %.F
3054    
3055    # C preprocessing and replacing the _d in constants:
3056    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3057    
3058    .F.$FS:
3059            \$(CPPCMD)  > \$@
3060    .$FS.o:
3061          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3062  .F90.f90:  .F.o:
3063          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3064  .f90.o:  .F90.$FS90:
3065            \$(CPPCMD)  > \$@
3066    .FF90.f$FS90:
3067            \$(CPPCMD)  > \$@
3068    .$FS90.o:
3069          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3070    .f$FS90.o:
3071            cp \$< \$(basename  \$<).f90
3072            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3073  .c.o:  .c.o:
3074          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3075    .flow.flowdir:
3076            \$(CPPCMD) > \$@
3077    
3078  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3079  .F.p:  .F.p:
3080          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3081  .p.f:  .p.$FS:
3082          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3083    
3084  EOF  EOF
3085    
3086    #=========================================
3087    #===  Automatic Differentiation Rules  ===
3088    #===  for TAMC/TAF  ======================
3089    
3090    if test "x$OPENAD" = x ; then
3091    
3092    cat >>$MAKEFILE <<EOF
3093    
3094    TAMC           = ${TAMC}
3095    TAF            = ${TAF}
3096    
3097    TAF_EXTRA      = ${TAF_EXTRA}
3098    TAMC_EXTRA     = ${TAMC_EXTRA}
3099    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3100    
3101    EOF
3102    
3103    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
3104    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
3105    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3106    for i in $ad_vars ; do
3107        name=$i
3108        t1="t2=\$"`echo "$i"`
3109        eval $t1
3110        printf "%-20s = " $name >> $MAKEFILE
3111        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3112    done
3113    
3114    echo "  Add the source list for AD code generation"
3115    echo >> $MAKEFILE
3116    printf "AD_FILES = " >> $MAKEFILE
3117    AD_FILES=`cat $TMP.adSrcFiles`
3118    for i in $AD_FILES ; do
3119        echo    " \\" >> $MAKEFILE
3120        printf " $i" >> $MAKEFILE
3121    done
3122    echo >> $MAKEFILE
3123    rm -f $TMP.adSrcFiles
3124    
3125    cat >>$MAKEFILE <<EOF
3126    
3127    # ... AD ...
3128    adall: ad_exe_target
3129    adtaf: ad_taf_output.$FS
3130    adtamc: ad_tamc_output.$FS
3131    
3132    ad_exe_target:
3133            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3134            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3135            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3136            @-rm -f ad_config.template
3137            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3138    
3139    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3140            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3141            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3142            @-rm -f ad_config.template
3143            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3144            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3145            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3146    
3147    ad_taf_output.$FS: ad_input_code.$FS
3148            @-rm -f ad_input_code_ad.$FS ; echo ''
3149            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3150            ls -l ad_input_code_ad.$FS
3151            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3152    
3153    adtafonly:
3154            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3155            ls -l ad_input_code_ad.$FS
3156            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3157    
3158    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3159            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3160    
3161    ad_tamc_output.$FS: ad_input_code.$FS
3162            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3163            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3164    
3165    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3166            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3167    
3168    adonlyfwd:
3169            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3170    
3171    adtrick:
3172            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3173    
3174    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3175    
3176    # ... FTL ...
3177    ftlall: ftl_exe_target
3178    ftltaf: ftl_taf_output.$FS
3179    ftltamc: ftl_tamc_output.$FS
3180    
3181    ftl_exe_target:
3182            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3183            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3184            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3185            @-rm -f ad_config.template
3186            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3187    
3188    ftl_input_code.$FS: \$(AD_FILES)
3189            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3190            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191            @-rm -f ad_config.template
3192            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3193            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3194            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3195    
3196    ftl_taf_output.$FS: ftl_input_code.$FS
3197            @-rm -f ftl_input_code_tl.$FS ; echo ''
3198            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3199            ls -l ftl_input_code_tl.$FS
3200            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3201    
3202    ftltafonly:
3203            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3204            ls -l ftl_input_code_tl.$FS
3205            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3206    
3207    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3208            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3209    
3210    ftl_tamc_output.$FS: ftl_input_code.$FS
3211            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3212            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3213    
3214    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3215            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3216    
3217    # ... SVD ...
3218    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3219            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3220            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3221    svdall: svd_touch svd_taf
3222    
3223    svd_taf: \$(OBJFILES)
3224            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3225    
3226            @echo "--->>> Only COMPILE svd code! <<<---"
3227            @echo "--->>> Assumes you previously <<<---"
3228            @echo "--->>> did make svdtaf        <<<---"
3229    
3230    svd_touch:
3231            @echo "--->>> Only COMPILE svd code! <<<---"
3232            @echo "--->>> Assumes you previously <<<---"
3233            @echo "--->>> did make svdtaf        <<<---"
3234            touch ad_taf_output.$FS ftl_taf_output.$FS
3235            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3236            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3237            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3238            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3239            @-rm -f ad_config.template
3240    
3241    EOF
3242    
3243    fi
3244    
3245    #===  for OpenAD  ========================
3246    
3247    if test "x$OPENAD" != x ; then
3248    
3249    # ============ begin OpenAD specific section ==============
3250    
3251    cat >>$MAKEFILE <<EOF
3252    # ... OpenAD ...
3253    
3254    # all the source files linked from the various locations:
3255    ALL_LINKED_FILES= \
3256    \$(F77_SRC_FILES) \
3257    \$(C_SRC_FILES) \
3258    \$(H_SRC_FILES) \
3259    \$(F90_SRC_FILES) \
3260    \$(SPECIAL_FILES)
3261    
3262    ifndef OPENADROOT
3263      \$(error "Error:  environment variable OPENADROOT not defined!")
3264    endif
3265    
3266    ifndef XAIFSCHEMAROOT
3267      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3268    endif
3269    
3270    ifndef XAIFBOOSTERROOT
3271      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3272    endif
3273    
3274    EOF
3275    
3276    echo "  Add the source list for common block to module conversion "
3277    echo >> $MAKEFILE
3278    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3279    for i in `cat ${OAD_CB2M_FILES}` ; do
3280      echo    " \\" >> $MAKEFILE
3281      printf " $i" >> $MAKEFILE
3282    done
3283    echo >> $MAKEFILE
3284    
3285    echo "  Add the source list for AD code generation"
3286    echo >> $MAKEFILE
3287    printf "AD_FILES = " >> $MAKEFILE
3288    for i in `cat ${OAD_CB2M_FILES}` ; do
3289      echo    " \\" >> $MAKEFILE
3290      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3291    done
3292    AD_FILES=`cat $TMP.adSrcFiles`
3293    for i in $AD_FILES ; do
3294      basename=${i%%.f}
3295      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3296      if test -z "$toBeIgnored" ; then
3297        echo    " \\" >> $MAKEFILE
3298        printf " $i" >> $MAKEFILE
3299      fi