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revision 1.11 by edhill, Mon Sep 29 16:15:23 2003 UTC revision 1.199 by utke, Wed Nov 4 16:58:57 2009 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24    }
25    
26    # Search for particular CPP #cmds associated with MPI
27    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28    test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46        RETVAL=$?
47        if test "x${RETVAL}" = x0 ; then
48            printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50            exit 99
51        fi
52        return 0
53    }
54    
55    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
56    # the package list.
57    expand_pkg_groups() {
58        new_packages=
59        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60        if test -r $PKG_GROUPS ; then
61            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63            matched=0
64            for i in $PACKAGES ; do
65                line=`grep "^ *$i" ./p2.tmp`
66                RETVAL=$?
67                if test "x$RETVAL" = x0 ; then
68                    matched=1
69                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70                    echo "    replacing \"$i\" with: $replace"
71                    new_packages="$new_packages $replace"
72                else
73                    new_packages="$new_packages $i"
74                fi
75            done
76            PACKAGES=$new_packages
77            rm -f ./p[1,2].tmp
78            return $matched
79        else
80            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81        fi
82    }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 45  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 63  EOF Line 381  EOF
381              p_FC="$p_FC $c"              p_FC="$p_FC $c"
382          fi          fi
383      done      done
384        rm -f ./hello.f ./hello
385      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
386          cat 1>&2 <<EOF          cat 1>&2 <<EOF
387    
# Line 70  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 144  get_pdepend_list()  { Line 480  get_pdepend_list()  {
480      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
481      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -noopt NAME | --noopt NAME"            Get the default package list from "NAME".
521      echo "      -noopt=NAME | --noopt=NAME"  
522  #    echo "    -cpp NAME | --cpp NAME"      -make NAME | -m NAME
523  #    echo "      -cpp=NAME | --cpp=NAME"        --make=NAME | -m=NAME
524      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Use "NAME" for the MAKE program. The default is "make" but
525      echo "      -fc=NAME | --fc=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -[no]ieee | --[no]ieee"  
527      echo "    -[no]mpi | --[no]mpi"      -makefile NAME | -mf NAME
528      echo "    -[no]jam | --[no]jam"        --makefile=NAME | -mf=NAME
529      echo            Call the makefile "NAME".  The default is "Makefile".
530      echo "  and NAME is a string such as:"  
531      echo      -makedepend NAME | -md NAME
532      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        --makedepend=NAME | -md=NAME
533      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Use "NAME" for the MAKEDEPEND program.
534      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
535      echo      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "  which, depending upon your shell, may need to be single-quoted"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo "  if it contains spaces, dashes, or other special characters."            Specify the location of the MITgcm ROOTDIR as "NAME".
538              By default, genamke will try to find the location by
539              looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619        -es | --es | -embed-source | --embed-source
620              Embed a tarball containing the full source code
621              (including the Makefile, etc.) used to build the
622              executable [off by default]
623    
624        -bash NAME
625              Explicitly specify the Bourne or BASH shell to use
626    
627      While it is most often a single word, the "NAME" variables specified
628      above can in many cases be a space-delimited string such as:
629    
630        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
631        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
632        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
633    
634      which, depending upon your shell, may need to be single-quoted.
635    
636      For more detailed genmake documentation, please see:
637    
638        http://mitgcm.org/devel_HOWTO/
639    
640    EOF
641    
642      exit 1      exit 1
643  }  }
644    
645  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
646  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
647  #eh3 set CPP        = ( '/lib/cpp -P' )  
648  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
650  #eh3 set FC         = ( 'f77' )          return 0
651  #eh3 set LINK       = $FC      fi
652  #eh3 set MAKEDEPEND = ( 'makedepend' )  
653  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
654  #eh3 set FFLAGS     = (  )      
655  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
656  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
657  #eh3 set KFLAGS1    = (  )  EOF
658  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
659  #eh3 set LIBS       = (  )      RETVAL=$?
660  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
661  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
662  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
663    
664    WARNING: C test compile fails
665    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
666    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
667    EOF
668            return 1
669        fi
670        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
671        RETVAL=$?
672        if test "x$RETVAL" != x0 ; then
673            FC_NAMEMANGLE=$default_nm
674            cat <<EOF>> genmake_warnings
675    
676    WARNING: The "nm" command failed.
677    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
678    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
679    EOF
680            return 1
681        fi
682        cat > genmake_tcomp.$FS <<EOF
683          subroutine tcall( string )
684          character*(*) string
685          call tsub( string )
686          end
687    EOF
688        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
689        RETVAL=$?
690        if test "x$RETVAL" != x0 ; then
691            FC_NAMEMANGLE=$default_nm
692            cat <<EOF>> genmake_warnings
693    
694    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
695    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
696    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
697    EOF
698            return 1
699        fi
700        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
701        RETVAL=$?
702        if test "x$RETVAL" != x0 ; then
703            FC_NAMEMANGLE=$default_nm
704            cat <<EOF>> genmake_warnings
705    
706    WARNING: The "nm" command failed.
707    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
708    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
709    EOF
710            return 1
711        fi
712    
713        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
714        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
715        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
716        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
717    
718        nmangle="X"
719        if test "x$c_a" != "x$f_a" ; then
720            comm="echo x$f_a | sed -e 's|x$c_a||'"
721            a=`eval $comm`
722            nmangle="$a ## $nmangle"
723        fi
724        if test "x$c_b" != "x$f_b" ; then
725            comm="echo x$f_b | sed -e 's|x$c_b||'"
726            b=`eval $comm`
727            nmangle="$nmangle ## $b"
728        fi
729    
730        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
731    
732        #  cleanup the testing files
733        rm -f genmake_tcomp.* genmake_test.*
734    }
735    
736    
737    check_HAVE_CLOC()  {
738        get_fortran_c_namemangling
739        cat <<EOF > genmake_tc_1.c
740    $FC_NAMEMANGLE
741    #include <stdio.h>
742    #include <stdlib.h>
743    #include <unistd.h>
744    #include <assert.h>
745    #include <sys/time.h>
746    void FC_NAMEMANGLE(cloc) ( double *curtim )
747    {
748     struct timeval tv1;
749     gettimeofday(&tv1 , (void *)NULL );
750     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
751     *curtim = *curtim/1.E6;
752    }
753    EOF
754        COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757        RET_C=$?
758        cat <<EOF > genmake_tc_2.$FS
759          program hello
760          REAL*8 wtime
761          external cloc
762          call cloc(wtime)
763          print *," HELLO WORLD", wtime
764          end
765    EOF
766        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
767        echo $COMM >> genmake_warnings
768        $COMM >> genmake_warnings 2>&1
769        RET_F=$?
770        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
771        RETVAL=$?
772        if test "x$RETVAL" = x0 ; then
773            HAVE_CLOC=t
774            DEFINES="$DEFINES -DHAVE_CLOC"
775        fi
776        rm -f genmake_tc*
777    }
778    
779    
780    check_HAVE_SIGREG()  {
781        if test ! "x$HAVE_SIGREG" = x ; then
782            return
783        fi
784        get_fortran_c_namemangling
785        cat <<EOF > genmake_tc_1.c
786    $FC_NAMEMANGLE
787    #include <stdlib.h>
788    #include <stdio.h>
789    #include <signal.h>
790    #include <errno.h>
791    #include <ucontext.h>
792    
793    int * ip;
794    
795    static void killhandler(
796        unsigned int sn, siginfo_t  si, struct ucontext *sc )
797    {
798        *ip = *ip + 1;
799        return;
800    }
801    
802    void FC_NAMEMANGLE(sigreg) (int * aip)
803    {
804        struct sigaction s;
805        ip = aip;
806        s.sa_flags = SA_SIGINFO;
807        s.sa_sigaction = (void *)killhandler;
808        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
809            printf("Sigaction returned error = %d\n", errno);
810            exit(0);
811        }
812        return;
813    }
814    EOF
815        COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818        RET_C=$?
819        cat <<EOF > genmake_tc_2.$FS
820          program hello
821          integer anint
822          common /iv/ anint
823          external sigreg
824          call sigreg(anint)
825          end
826    EOF
827        echo >> genmake_warnings
828        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
829        cat genmake_tc_2.$FS >> genmake_warnings
830        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> genmake_warnings
832        $COMM >> genmake_warnings 2>&1
833        RETVAL=$?
834        if test "x$RETVAL" = x0 ; then
835            HAVE_SIGREG=t
836            DEFINES="$DEFINES -DHAVE_SIGREG"
837        fi
838        rm -f genmake_tc*
839    }
840    
841    
842    check_HAVE_SETRLSTK()  {
843        if test "x$HAVE_SETRLSTK" = xt ; then
844            DEFINES="$DEFINES -DHAVE_SETRLSTK"
845            return
846        fi  
847        if test ! "x$HAVE_SETRLSTK" = x ; then
848            return
849        fi
850        get_fortran_c_namemangling
851        cat <<EOF > genmake_tc_1.c
852    $FC_NAMEMANGLE
853    #include <sys/time.h>
854    #include <sys/resource.h>
855    #include <unistd.h>
856    void FC_NAMEMANGLE(setrlstk) ()
857    {
858        struct rlimit rls;
859        rls.rlim_cur = RLIM_INFINITY;
860        rls.rlim_max = RLIM_INFINITY;
861        setrlimit(RLIMIT_STACK, &rls);
862        return;
863    }
864    EOF
865        COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868        RET_C=$?
869        cat <<EOF > genmake_tc_2.$FS
870          program hello
871          external setrlstk
872          call setrlstk()
873          end
874    EOF
875        echo >> genmake_warnings
876        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
877        cat genmake_tc_2.$FS >> genmake_warnings
878        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
879        echo $COMM >> genmake_warnings
880        $COMM >> genmake_warnings 2>&1
881        RETVAL=$?
882        if test "x$RETVAL" = x0 ; then
883            HAVE_SETRLSTK=t
884            DEFINES="$DEFINES -DHAVE_SETRLSTK"
885        fi
886        rm -f genmake_tc*
887    }
888    
889    
890    check_HAVE_STAT()  {
891        get_fortran_c_namemangling
892        cat <<EOF > genmake_tc_1.c
893    $FC_NAMEMANGLE
894    #include <stdio.h>
895    #include <stdlib.h>
896    #include <unistd.h>
897    #include <sys/stat.h>
898    #include <sys/types.h>
899    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
900    {
901        char name[512];
902        struct stat astat;
903    
904        name[0] = 'a'; name[1] = '\0';
905        if (! stat(name, &astat))
906            *nbyte = (int)(astat.st_size);
907        else
908            *nbyte = -1;
909    }
910    EOF
911        COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914        RET_C=$?
915        cat <<EOF > genmake_tc_2.$FS
916          program hello
917          integer nbyte
918          call tfsize(nbyte)
919          print *," HELLO WORLD", nbyte
920          end
921    EOF
922        echo >> genmake_warnings
923        echo "running: check_HAVE_STAT()" >> genmake_warnings
924        cat genmake_tc_2.$FS >> genmake_warnings
925        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
926        echo $COMM >> genmake_warnings
927        $COMM >> genmake_tc.log 2>&1
928        RETVAL=$?
929        if test "x$RETVAL" = x0 ; then
930            HAVE_STAT=t
931            DEFINES="$DEFINES -DHAVE_STAT"
932        fi
933        rm -f genmake_tc*
934    }
935    
936    
937    check_netcdf_libs()  {
938        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
939            return
940        fi
941        echo >> genmake_warnings
942        echo "running: check_netcdf_libs()" >> genmake_warnings
943        cat <<EOF > genmake_tnc.F
944          program fgennc
945    #include "netcdf.inc"
946    EOF
947        if test ! "x$MPI" = x ; then
948            echo '#include "mpif.h"' >> genmake_tnc.F
949        fi
950        cat <<EOF >> genmake_tnc.F
951          integer iret, ncid, xid
952          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
953          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
954          iret = nf_def_dim(ncid, 'X', 11, xid)
955          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
956          iret = nf_close(ncid)
957          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
958          end
959    EOF
960        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
961        cat genmake_tnc.F >> genmake_tnc.log
962        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
963        RET_CPP=f
964        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
965        echo "$COMM" >> genmake_tnc.log
966        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
967        if test "x$RET_CPP" = xf ; then
968            echo "  WARNING: CPP failed to pre-process the netcdf test." \
969                >> genmake_tnc.log
970            echo "    Please check that \$INCLUDES is properly set." \
971                >> genmake_tnc.log
972        fi
973        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
974        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
975        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
976            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
977        RET_COMPILE=$?
978        cat genmake_tnc.log >> genmake_warnings
979    
980        #EH3  Remove test program execution for machines that either disallow
981        #EH3  execution or cannot support it (eg. cross-compilers)
982        #EH3
983        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
984        #EH3 RETVAL=$?
985        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
986    
987        if test "x$RET_COMPILE" = x0 ; then
988            HAVE_NETCDF=t
989        else
990            # try again with "-lnetcdf" added to the libs
991            echo "try again with added '-lnetcdf'" > genmake_tnc.log
992            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
993            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
994            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
995            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
996                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
997                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
998            RET_COMPILE=$?
999            cat genmake_tnc.log >> genmake_warnings
1000            if test "x$RET_COMPILE" = x0 ; then
1001                LIBS="$LIBS -lnetcdf"
1002                HAVE_NETCDF=t
1003            else
1004            # try again with "-lnetcdff" added to the libs
1005                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1006                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1012                RET_COMPILE=$?
1013                cat genmake_tnc.log >> genmake_warnings
1014                if test "x$RET_COMPILE" = x0 ; then
1015                    LIBS="$LIBS -lnetcdff -lnetcdf"
1016                    HAVE_NETCDF=t
1017                fi
1018            fi
1019        fi
1020        rm -f genmake_tnc*
1021    }
1022    
1023    
1024    
1025    ###############################################################################
1026    #   Sequential part of script starts here
1027    ###############################################################################
1028    
1029  #  Set defaults here  #  Set defaults here
1030  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 228  PLATFORM= Line 1033  PLATFORM=
1033  LN=  LN=
1034  S64=  S64=
1035  KPP=  KPP=
1036  FC=  #FC=
1037    #CC=gcc
1038    #CPP=
1039  LINK=  LINK=
1040  DEFINES="-DWORDLENGTH=4"  DEFINES=
1041  PACKAGES=  PACKAGES=
1042  ENABLE=  ENABLE=
1043  DISABLE=  DISABLE=
1044  MAKEFILE=  # MAKEFILE=
1045  MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PDEPEND=
1047  DUMPSTATE=t  DUMPSTATE=t
1048  PDEFAULT=  PDEFAULT=
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
1059    #LDADD=
1060  LIBS=  LIBS=
1061  KPPFILES=  KPPFILES=
1062  NOOPTFILES=  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064    MPI=
1065    MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068    TS=
1069    PAPIS=
1070    PCLS=
1071    FOOLAD=
1072    PAPI=
1073    PCL=
1074    HPMT=
1075    GSL=
1076    DEVEL=
1077    HAVE_TEST_L=
1078    
1079    # DEFINES checked by test compilation or command-line
1080    HAVE_SYSTEM=
1081    HAVE_FDATE=
1082    FC_NAMEMANGLE=
1083    HAVE_CLOC=
1084    # HAVE_SETRLSTK=
1085    HAVE_STAT=
1086    HAVE_NETCDF=
1087    HAVE_ETIME=
1088    IGNORE_TIME=
1089    
1090  MODS=  MODS=
1091  TOOLSDIR=  TOOLSDIR=
1092  SOURCEDIRS=  SOURCEDIRS=
1093  INCLUDEDIRS=  INCLUDEDIRS=
1094    STANDARDDIRS="USE_THE_DEFAULT"
1095    
1096    G2ARGS=
1097    BASH=
1098  PWD=`pwd`  PWD=`pwd`
1099  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1100  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1101    EMBED_SRC=
1102    THISHOST=`hostname`
1103  THISCWD=`pwd`  THISCWD=`pwd`
1104  THISDATE=`date`  THISDATE=`date`
1105    THISUSER=`echo $USER`
1106    THISVER=
1107  MACHINE=`uname -a`  MACHINE=`uname -a`
1108  EXECUTABLE=  EXECUTABLE=
1109  EXEHOOK=  EXEHOOK=
1110  EXEDIR=  EXEDIR=
1111    PACKAGES_CONF=
1112    IEEE=
1113    if test "x$MITGCM_IEEE" != x ; then
1114        IEEE=$MITGCM_IEEE
1115    fi
1116    FS=
1117    FS90=
1118    
1119    AUTODIFF_PKG_USED=f
1120    AD_OPTFILE=
1121    TAF=
1122    AD_TAF_FLAGS=
1123    FTL_TAF_FLAGS=
1124    SVD_TAF_FLAGS=
1125    TAF_EXTRA=
1126    TAMC=
1127    AD_TAMC_FLAGS=
1128    FTL_TAF_FLAGS=
1129    SVD_TAMC_FLAGS=
1130    TAMC_EXTRA=
1131    
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1142    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1143    
1144  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
1145    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1146    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1147    gm_s12="TAF_EXTRA TAMC_EXTRA"
1148    
1149    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1150    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1151    
1152    cat <<EOF
1153    
1154    GENMAKE :
1155    
1156    A program for GENerating MAKEfiles for the MITgcm project.  For a
1157    quick list of options, use "genmake -h" or for more detail see:
1158    
1159      http://mitgcm.org/devel_HOWTO/
1160    
1161    EOF
1162    
 echo  
1163  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1164  gm_local="./gm_local"  gm_local="genmake_local"
1165  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1166  if test -e $gm_local ; then  if test -f $gm_local ; then
1167      echo "using $gm_local"      echo "using $gm_local"
1168      source $gm_local      . $gm_local
1169      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1170      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1171  else  else
1172      echo "none found"      echo "none found"
1173  fi  fi
1174    
1175  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1176  #parse_options  #parse_options
   
1177  ac_prev=  ac_prev=
1178  for ac_option ; do  for ac_option in "$@" ; do
1179    
1180        G2ARGS="$G2ARGS \"$ac_option\""
1181    
1182      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1183      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 328  for ac_option ; do Line 1200  for ac_option ; do
1200          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1201              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1202                    
1203            -adoptfile | --adoptfile | -adof | --adof)
1204                ac_prev=AD_OPTFILE ;;
1205            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1206                AD_OPTFILE=$ac_optarg ;;
1207            
1208          -pdepend | --pdepend)          -pdepend | --pdepend)
1209              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
1210          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 343  for ac_option ; do Line 1220  for ac_option ; do
1220          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1221              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1222                    
1223            -bash | --bash)
1224                ac_prev=BASH ;;
1225            -bash=* | --bash=*)
1226                BASH=$ac_optarg ;;
1227            
1228            -makedepend | --makedepend | -md | --md)
1229                ac_prev=MAKEDEPEND ;;
1230            -makedepend=* | --makedepend=* | -md=* | --md=*)
1231                MAKEDEPEND=$ac_optarg ;;
1232            
1233          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1234              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1235          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1236              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1237                    
1238          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1239              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1240          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1241              PLATFORM=$ac_optarg ;;              echo
1242                usage
1243                ;;
1244                    
1245          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1246              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 373  for ac_option ; do Line 1262  for ac_option ; do
1262          -enable=* | --enable=*)          -enable=* | --enable=*)
1263              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1264                    
1265          -noopt | --noopt)          -standarddirs | --standarddirs)
1266              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1267          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1268              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1269            
1270  #           -cpp | --cpp)  #           -cpp | --cpp)
1271  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1272  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1273  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1274                        
1275            -cc | --cc)
1276                ac_prev=CC ;;
1277            -cc=* | --cc=*)
1278                CC=$ac_optarg ;;
1279            
1280          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1281              ac_prev=FC ;;              ac_prev=FC ;;
1282          -fc=* | --fc=*)          -fc=* | --fc=*)
1283              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1284                    
1285            -fs | --fs)
1286                ac_prev=FS ;;
1287            -fs=* | --fs=*)
1288                FS=$ac_optarg ;;
1289            
1290            -fs90 | --fs90)
1291                ac_prev=FS90 ;;
1292            -fs90=* | --fs90=*)
1293                FS90=$ac_optarg ;;
1294            
1295          -ieee | --ieee)          -ieee | --ieee)
1296              IEEE=1 ;;              IEEE=true ;;
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE=0 ;;              IEEE= ;;
1299            
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=1 ;;              MPI=true ;;
1323          -nompi | --nompi)          -mpi=* | --mpi=*)
1324              MPI=0 ;;              MPIPATH=$ac_optarg
1325                        MPI=true ;;
1326          -jam | --jam)          
1327              JAM=1 ;;          -omp | --omp)
1328          -nojam | --nojam)              OMP=true ;;
1329              JAM=0 ;;          -omp=* | --omp=*)
1330                OMPFLAG=$ac_optarg
1331                OMP=true ;;
1332                    
1333          -ds | --ds)          -ds | --ds)
1334              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1335                    
1336            -taf_extra | --taf_extra)
1337                ac_prev=TAF_EXTRA ;;
1338            -taf_extra=* | --taf_extra=*)
1339                TAF_EXTRA=$ac_optarg ;;
1340    
1341            -tamc_extra | --tamc_extra)
1342                ac_prev=TAMC_EXTRA ;;
1343            -tamc_extra=* | --tamc_extra=*)
1344                TAMC_EXTRA=$ac_optarg ;;
1345            
1346            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1347                IGNORE_TIME="-DIGNORE_TIME" ;;
1348    
1349            -es | --es | -embed-source | --embed-source)
1350                EMBED_SRC=t ;;
1351    
1352          -*)          -*)
1353              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1354              usage              usage
# Line 420  for ac_option ; do Line 1363  for ac_option ; do
1363            
1364  done  done
1365    
1366    
1367    if test -f ./.genmakerc ; then
1368        echo
1369        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1370        echo "  file.  This file format is no longer supported.  For directions on"
1371        echo "  how to setup and use the new \"genmake2\" script, please see:"
1372        echo "    http://mitgcm.org/devel_HOWTO/"
1373        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1374        echo "WARNING: ignore \"./.genmakerc\" and continue."
1375        echo
1376    fi
1377    
1378    #  Find the MITgcm ${ROOTDIR}
1379  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1380      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1381        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1382          ROOTDIR=".."          ROOTDIR=".."
1383      else      else
1384          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1385              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1386                  ROOTDIR=$d                  ROOTDIR=$d
1387                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1388                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1389                  break                  break
1390              fi              fi
# Line 445  if test ! -d ${ROOTDIR} ; then Line 1402  if test ! -d ${ROOTDIR} ; then
1402      exit 1      exit 1
1403  fi  fi
1404    
1405    #  Find the MITgcm ${THISVER}
1406    version_file="${ROOTDIR}/doc/tag-index"
1407    if test -f $version_file ; then
1408        THISVER=`grep '^checkpoint' $version_file | head -1`
1409    #-  remove ./BUILD_INFO.h file if older than version_file
1410        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1411            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1412            rm -f ./BUILD_INFO.h
1413        fi
1414    fi
1415    
1416    if test "x$MAKEFILE" = x ; then
1417        MAKEFILE="Makefile"
1418    fi
1419    
1420  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1421  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1422      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 458  fi Line 1430  fi
1430  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1431      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1432          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1433          source "$OPTFILE"          . "$OPTFILE"
1434          RETVAL=$?          RETVAL=$?
1435          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1436              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1437              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1438              exit 1              exit 1
1439          fi          fi
1440          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
1441              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
1442          fi          fi
1443      else      else
1444          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 474  if test "x$OPTFILE" != xNONE ; then Line 1446  if test "x$OPTFILE" != xNONE ; then
1446      fi      fi
1447  fi  fi
1448    
1449  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
1450  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
1451        if test "x$MITGCM_AD_OF" = x ; then
1452            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1453        else
1454            AD_OPTFILE=$MITGCM_AD_OF
1455        fi
1456    fi
1457    if test "x${AD_OPTFILE}" != xNONE ; then
1458        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1459            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1460            . "$AD_OPTFILE"
1461            RETVAL=$?
1462            if test "x$RETVAL" != x0 ; then
1463                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1464                echo "--please check that variable syntax is bash-compatible"
1465                exit 1
1466            fi
1467            if test "x$DUMPSTATE" != xf ; then
1468                cp -f $AD_OPTFILE "genmake_ad_optfile"
1469            fi
1470        else
1471            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1472            exit 1
1473        fi
1474    fi
1475    
1476    #====================================================================
1477    #  Set default values if not set by the optfile
1478    #
1479    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1480    #  either set defaults or complain and abort!
1481    if test ! "x$BASH" = x ; then
1482        # add a trailing space so that it works within the Makefile syntax (see below)
1483        BASH="$BASH "
1484    fi
1485  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1486      cat <<EOF 1>&2      cat <<EOF 1>&2
1487    
1488  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
1489    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1490    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1491    3) the "./gm_local" file    3) the "./genmake_local" file
1492  EOF  EOF
1493      exit 1      exit 1
1494  fi  fi
1495    if test "x$CC" = x ; then
1496        CC=cc
1497    #     cat <<EOF 1>&2
1498    # Error: no C compiler: please specify using one of the following:
1499    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1500    #   2) the "-cc=XXX" command-line option
1501    #   3) the "./genmake_local" file
1502    # EOF
1503    #     exit 1
1504    fi
1505  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1506      LINK=$FC      LINK=$FC
1507  fi  fi
1508  if test "x$CPP" = x ; then  if test "x$MAKE" = x ; then
1509      CPP="cpp"      MAKE="make"
1510    fi
1511    if test "x$CPP" = x ; then
1512        CPP=cpp
1513    fi
1514    #EH3 === UGLY ===
1515    #  The following is an ugly little hack to check for $CPP in /lib/ and
1516    #  it should eventually be replaced with a more general function that
1517    #  searches a combo of the user's path and a list of "usual suspects"
1518    #  to find the correct location for binaries such as $CPP.
1519    for i in " " "/lib/" ; do
1520        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1521    done
1522    #EH3 === UGLY ===
1523    echo "#define A a" | $CPP > test_cpp 2>&1
1524    RETVAL=$?
1525    if test "x$RETVAL" != x0 ; then
1526        cat <<EOF 1>&2
1527    
1528    Error: C pre-processor "$CPP" failed the test case: please specify using:
1529    
1530      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1531      2) the "./genmake_local" file
1532      3) with the CPP environment variable
1533    
1534    EOF
1535        exit 1
1536    else
1537        rm -f test_cpp
1538    fi
1539    look_for_makedepend
1540    if test "x$LN" = x ; then
1541        LN="ln -s"
1542    fi
1543    echo "test" > genmake_test_ln
1544    $LN genmake_test_ln genmake_tlink
1545    RETVAL=$?
1546    if test "x$RETVAL" != x0 ; then
1547        cat <<EOF 1>&2
1548    
1549    Error: The command "ln -s" failed -- please specify a working soft-link
1550      command in the optfile.
1551    
1552    EOF
1553        exit 1
1554    fi
1555    test -L genmake_tlink > /dev/null 2>&1
1556    RETVAL=$?
1557    if test "x$RETVAL" = x0 ; then
1558        HAVE_TEST_L=t
1559    fi
1560    rm -f genmake_test_ln genmake_tlink
1561    
1562    #  Check for broken *.F/*.f handling and fix if possible
1563    check_for_broken_Ff
1564    
1565    if test ! "x$MPI" = x ; then
1566          echo "  Turning on MPI cpp macros"
1567          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1568    fi
1569    if test ! "x$OMP" = x ; then
1570          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1571          FFLAGS="$FFLAGS $OMPFLAG"
1572          F90FLAGS="$F90FLAGS $OMPFLAG"
1573          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1574    fi
1575    
1576    if test ! "x$TS" = x ; then
1577          echo "  Turning on timing per timestep"
1578          if test ! "x$FOOLAD" = x ; then
1579                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1580          else
1581                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1582          fi
1583          PACKAGES="$PACKAGES showflops"
1584    fi
1585    if test ! "x$PAPIS" = x ; then
1586          echo "  Turning on PAPI flop summary per timestep"
1587          echo "  Please make sure PAPIINC, PAPILIB are defined"
1588          if test ! "x$FOOLAD" = x ; then
1589                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1590          else
1591                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1592          fi
1593          INCLUDES="$INCLUDES $PAPIINC"
1594          LIBS="$LIBS $PAPILIB"
1595          PACKAGES="$PACKAGES showflops"
1596    fi
1597    if test ! "x$PCLS" = x ; then
1598          echo "  Turning on PCL counter summary per timestep"
1599          echo "  Please make sure PCLINC, PCLLIB are defined"
1600          if test ! "x$FOOLAD" = x ; then
1601                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1602          else
1603                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1604          fi
1605          INCLUDES="$INCLUDES $PCLINC"
1606          LIBS="$LIBS $PCLLIB"
1607          PACKAGES="$PACKAGES showflops"
1608    fi
1609    if test ! "x$PAPI" = x ; then
1610          if test ! "x$PAPIS" = x ; then
1611              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1612              echo "  Sticking with PAPI flop summary per timestep!"
1613          else
1614              echo "  Turning on performance analysis with PAPI"
1615              echo "  Please make sure PAPIINC, PAPILIB are defined"
1616              DEFINES="$DEFINES -DUSE_PAPI"
1617              INCLUDES="$INCLUDES $PAPIINC"
1618              LIBS="$LIBS $PAPILIB"
1619          fi
1620    fi
1621    if test ! "x$PCL" = x ; then
1622          if test ! "x$PCLS" = x ; then
1623              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1624              echo "  Sticking with PCL flop summary per timestep!"
1625          else
1626              echo "  Turning on performance analysis with PCL"
1627              echo "  Please make sure PCLINC, PCLLIB are defined"
1628              DEFINES="$DEFINES -DUSE_PCL"
1629              INCLUDES="$INCLUDES $PCLINC"
1630              LIBS="$LIBS $PCLLIB"
1631          fi
1632    fi
1633    if test ! "x$HPMT" = x ; then
1634          if test ! "x$PAPI" = x ; then
1635              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1636              echo "  Sticking with PAPI!"
1637          else if test ! "x$PCL" = x ; then
1638              echo "  PCL and the HPM Toolkit cannot co-exist!"
1639              echo "  Sticking with PCL!"
1640          else
1641              echo "  Turning on performance analysis with the HPM Toolkit"
1642              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1643              DEFINES="$DEFINES -DUSE_LIBHPM"
1644              INCLUDES="$INCLUDES $HPMTINC"
1645              LIBS="$LIBS $HPMTLIB"
1646          fi
1647          fi
1648    fi
1649    if test ! "x$GSL" = x ; then
1650          echo "  Turning on use of GSL to control floating point calculations"
1651          echo "  Please make sure GSLINC, GSLLIB are defined"
1652          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1653          INCLUDES="$INCLUDES $GSLINC"
1654          LIBS="$LIBS $GSLLIB"
1655    fi
1656    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1657    if test ! "x$USE_EXTENDED_SRC" = x ; then
1658          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1659          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1660    fi
1661    
1662    printf "\n===  Checking system libraries  ===\n"
1663    printf "  Do we have the system() command using $FC...  "
1664    cat > genmake_tcomp.$FS <<EOF
1665          program hello
1666          call system('echo hi')
1667          end
1668    EOF
1669    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1670    RETVAL=$?
1671    if test "x$RETVAL" = x0 ; then
1672        HAVE_SYSTEM=t
1673        DEFINES="$DEFINES -DHAVE_SYSTEM"
1674        echo "yes"
1675    else
1676        HAVE_SYSTEM=
1677        echo "no"
1678    fi
1679    rm -f genmake_tcomp*
1680    
1681    printf "  Do we have the fdate() command using $FC...  "
1682    cat > genmake_tcomp.$FS <<EOF
1683          program hello
1684          CHARACTER*(128) string
1685          string = ' '
1686          call fdate( string )
1687          print *, string
1688          end
1689    EOF
1690    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1691    RETVAL=$?
1692    if test "x$RETVAL" = x0 ; then
1693        HAVE_FDATE=t
1694        DEFINES="$DEFINES -DHAVE_FDATE"
1695        echo "yes"
1696    else
1697        HAVE_FDATE=
1698        echo "no"
1699    fi
1700    rm -f genmake_tcomp*
1701    
1702    printf "  Do we have the etime() command using $FC...  "
1703    cat > genmake_tcomp.$FS <<EOF
1704          program hello
1705          REAL*4 ACTUAL, TARRAY(2)
1706          EXTERNAL ETIME
1707          REAL*4 ETIME
1708          actual = etime( tarray )
1709          print *, tarray
1710          end
1711    EOF
1712    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1713    RETVAL=$?
1714    if test "x$RETVAL" = x0 ; then
1715        HAVE_ETIME=t
1716        DEFINES="$DEFINES -DHAVE_ETIME"
1717        echo "yes"
1718    else
1719        HAVE_ETIME=
1720        echo "no"
1721    fi
1722    rm -f genmake_tcomp*
1723    
1724    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1725    check_HAVE_CLOC
1726    if test "x$HAVE_CLOC" != x ; then
1727        echo "yes"
1728    else
1729        echo "no"
1730        if test "x$EMBED_SRC" = xt ; then
1731            echo "    WARNING: you requested file embedding but it has"
1732            echo "      been disabled since C code cannot be called"
1733            EMBED_SRC=
1734        fi
1735    fi
1736    rm -f genmake_t*
1737    
1738    printf "  Can we unlimit the stack size using $FC...  "
1739    check_HAVE_SETRLSTK
1740    if test "x$HAVE_SETRLSTK" = xt ; then
1741        echo "yes"
1742    else
1743        echo "no"
1744  fi  fi
1745  echo "#define A a" | cpp > test_cpp 2>&1  rm -f genmake_t*
 RETVAL=$?  
 if test "x$RETVAL" != x0 ; then  
     cat <<EOF 1>&2  
1746    
1747  Error: C pre-processor "$CPP" failed the test case: please specify using:  printf "  Can we register a signal handler using $FC...  "
1748    check_HAVE_SIGREG
1749    if test "x$HAVE_SIGREG" = xt ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753    fi
1754    rm -f genmake_t*
1755    
1756    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"  printf "  Can we use stat() through C calls...  "
1757    2) the "./gm_local" file  check_HAVE_STAT
1758    if test "x$HAVE_STAT" != x ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762    fi
1763    rm -f genmake_t*
1764    
1765  EOF  printf "  Can we create NetCDF-enabled binaries...  "
1766      exit 1  check_netcdf_libs
1767    if test "x$HAVE_NETCDF" != x ; then
1768        echo "yes"
1769  else  else
1770      rm -f test_cpp      echo "no"
1771  fi  fi
1772  if test "x$MAKEDEPEND" = x ; then  DEFINES="$DEFINES $IGNORE_TIME"
1773      MAKEDEPEND=makedepend  
1774    if test "x$EMBED_SRC" = xt ; then
1775        build_embed_encode
1776    fi
1777    if test "x$EMBED_SRC" = xt ; then
1778        ENABLE="$ENABLE embed_files"
1779  fi  fi
1780    
1781    
1782  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1783  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1784  for d in $MODS ; do  for d in $MODS ; do
1785      if test ! -d $d ; then      if test ! -d $d ; then
1786          echo          echo
1787          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1788          exit 1          exit 1
1789      else      else
1790          echo -n " $d"          printf "$d "
1791          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1792          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1793      fi      fi
1794  done  done
1795  echo  echo
1796    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1797  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1798      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1799  fi  fi
1800    
1801  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1802      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1803        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1804          EXEDIR=../exe          EXEDIR=../exe
1805      else      else
1806          EXEDIR=.          EXEDIR=.
# Line 549  if test "x${TOOLSDIR}" = x ; then Line 1815  if test "x${TOOLSDIR}" = x ; then
1815      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1816  fi  fi
1817  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1818      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1819      exit 1      exit 1
1820  fi  fi
1821  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1822      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1823        RETVAL=$?
1824        if test "x${RETVAL}" = x0 ; then
1825            S64='$(TOOLSDIR)/set64bitConst.sh'
1826        else
1827            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1828            RETVAL=$?
1829            if test "x${RETVAL}" = x0 ; then
1830                S64='$(TOOLSDIR)/set64bitConst.csh'
1831            else
1832                cat <<EOF
1833    
1834    ERROR: neither of the two default scripts:
1835    
1836        ${TOOLSDIR}/set64bitConst.sh
1837        ${TOOLSDIR}/set64bitConst.csh
1838    
1839      are working so please check paths or specify (with \$S64) a
1840      working version of this script.
1841    
1842    EOF
1843                exit 1
1844            fi
1845        fi
1846  fi  fi
1847    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1848    
1849  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1850    
# Line 563  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1853  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1853  #  they appear as regular source code  #  they appear as regular source code
1854  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1855      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1856      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1857      RETVAL=$?      RETVAL=$?
1858      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1859          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1860      else      else
1861          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1862          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1863          exit 1          exit 1
1864      fi      fi
1865  fi  fi
1866    
1867    #same for pkg/exch2 and pkg/regrid
1868    for pdir in exch2 regrid ; do
1869        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1870            echo "  Making source files in pkg/${pdir} from templates"
1871            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1872            RETVAL=$?
1873            if test "x${RETVAL}" = x0 ; then
1874                rm -f make_${pdir}.errors
1875            else
1876                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1877                cat make_${pdir}.errors 1>&2
1878                exit 1
1879            fi
1880        fi
1881    done
1882    
1883  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1884  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1885      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 593  echo "  getting package dependency info Line 1899  echo "  getting package dependency info
1899  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1900  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1901  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1902      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1903      > ./.pd_tmp      > ./.pd_tmp
1904  RETVAL=$?  RETVAL=$?
1905  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1906      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1907      exit 1      exit 1
1908  fi  fi
1909  source ./.pd_tmp  . ./.pd_tmp
1910  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1911    
1912  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1913    #  file should eventually be added so that, for convenience, one can
1914    #  specify groups of packages using names like "ocean" and "atmosphere".
1915    echo "  checking default package list:  "
1916    if test "x${PDEFAULT}" = x ; then
1917        for i in "." $MODS ; do
1918            if test -r $i"/packages.conf" ; then
1919                    PDEFAULT=$i"/packages.conf"
1920                    break
1921            fi
1922        done
1923    fi
1924  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1925      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1926  fi  fi
1927  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1928      echo "default packages file disabled"      echo "    default packages file disabled"
1929  else  else
1930      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1931          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1932      else      else
1933          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1934          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1935          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1936          RETVAL=$?          RETVAL=$?
1937          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1938              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1939              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1940              exit 1              exit 1
1941          fi          fi
1942          for i in $def ; do          for i in $def ; do
1943              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1944          done          done
1945          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1946            RET=1
1947            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1948            echo "    after group expansion packages are:  $PACKAGES"
1949      fi      fi
1950  fi  fi
1951    
1952  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1953    for i in $PACKAGES ; do
1954        echo $i >> ./.tmp_pack
1955    done
1956    for i in `grep  "-" ./.tmp_pack` ; do
1957        j=`echo $i | sed 's/[-]//'`
1958        DISABLE="$DISABLE $j"
1959    done
1960  pack=  pack=
1961  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1962      addit="t"      addit="t"
# Line 645  for p in $PACKAGES ; do Line 1971  for p in $PACKAGES ; do
1971  done  done
1972  PACKAGES="$pack"  PACKAGES="$pack"
1973  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1974  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1975  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1976    # Test if each explicitly referenced package exists
1977  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1978      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1979        if test ! -d "$ROOTDIR/pkg/$j" ; then
1980          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1981          exit 1          exit 1
1982      fi      fi
1983      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1984  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1985  PACKAGES=  PACKAGES=
1986  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1987      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1988  done  done
1989    rm -f ./.tmp_pack
1990  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1991    
1992    #  Check for package MNC: if NetCDF is available, then build the MNC
1993    #  template files ; otherwise, delete mnc from the list of packages.
1994    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1995    RETVAL=$?
1996    if test "x$RETVAL" = x0 ; then
1997        if test "x$HAVE_NETCDF" != xt ; then
1998            cat <<EOF
1999    
2000    *********************************************************************
2001    WARNING: the "mnc" package was enabled but tests failed to compile
2002      NetCDF applications.  Please check that:
2003    
2004      1) NetCDF is correctly installed for this compiler and
2005      2) the LIBS variable (within the "optfile") specifies the correct
2006           NetCDF library to link against.
2007    
2008      Due to this failure, the "mnc" package is now DISABLED.
2009    *********************************************************************
2010    
2011    EOF
2012            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2013            DISABLE="$DISABLE mnc"
2014        else
2015            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2016            RETVAL=$?
2017            if test "x${RETVAL}" = x0 ; then
2018                rm -f make_mnc.errors
2019            else
2020                echo "Error: problem encountered while building source files in pkg/mnc:"
2021                cat make_mnc.errors 1>&2
2022                exit 1
2023            fi
2024        fi
2025    fi
2026    
2027    #  Check for package PROFILES: if NetCDF is not available,
2028    #  then delete profiles from the list of available packages.
2029    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2030    RETVAL=$?
2031    if test "x$RETVAL" = x0 ; then
2032        if test "x$HAVE_NETCDF" != xt ; then
2033            cat <<EOF
2034    
2035    *********************************************************************
2036    WARNING: the "profiles" package was enabled but tests failed to
2037      compile NetCDF applications.  Please check that:
2038    
2039      1) NetCDF is correctly installed for this compiler and
2040      2) the LIBS variable (within the "optfile") specifies the correct
2041           NetCDF library to link against.
2042    
2043      Due to this failure, the "profiles" package is now DISABLED.
2044    *********************************************************************
2045    
2046    EOF
2047            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2048            DISABLE="$DISABLE profiles"
2049        fi
2050    fi
2051    
2052  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2053  ck=  ck=
2054  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2055      i=0      i=0
2056      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2057      rtot=$nname      rtot=$nname
2058      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2059    
2060          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2061          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 702  while test "x$ck" != xtt ; do Line 2089  while test "x$ck" != xtt ; do
2089    
2090          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2091          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2092                #echo "   " $pname ": need to add :" $dname
2093              in_dis="f"              in_dis="f"
2094              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2095                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 726  while test "x$ck" != xtt ; do Line 2114  while test "x$ck" != xtt ; do
2114              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2115              exit 1              exit 1
2116          fi          fi
2117          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2118            #i=$(( $i + 1 ))
2119      done      done
2120      ck=$ck"t"      ck=$ck"t"
2121  done  done
# Line 736  for i in $PACKAGES ; do Line 2125  for i in $PACKAGES ; do
2125      if test -d $adr ; then      if test -d $adr ; then
2126          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2127          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2128            if test "x$i" = xautodiff ; then
2129                AUTODIFF_PKG_USED=t
2130            fi
2131      else      else
2132          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2133          exit 1          exit 1
2134      fi      fi
2135  done  done
2136    
2137  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2138  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
2139  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2140  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2141  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2142  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2143  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2144  all_pack=  all_pack=
2145    DISABLED_PACKAGES=
2146  for n in $names ; do  for n in $names ; do
2147      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2148          has_pack="f"          has_pack="f"
# Line 813  for n in $names ; do Line 2153  for n in $names ; do
2153              fi              fi
2154          done          done
2155          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2156              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2157              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2158          fi          fi
2159      fi      fi
2160  done  done
2161  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2162  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2163      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2164      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2165    #eh3 DEFINES="$DEFINES -D$def"
2166    
2167  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2168      case $i in      case $i in
2169          aim_v23)          aim_v23)
2170              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2171                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2172              ;;              ;;
2173      esac      esac
2174  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2175    
2176  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2177    
2178  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2179  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2180  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2181  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
2182      adr="$ROOTDIR/$d/src"  fi
2183      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
2184          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
2185          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
2186          exit 1          if test ! -d $adr ; then
2187      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2188          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2189      fi              exit 1
2190      adr="$ROOTDIR/$d/inc"          else
2191      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
2192          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
2193          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
2194          exit 1          if test ! -d $adr ; then
2195      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2196          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2197                exit 1
2198            else
2199                INCLUDEDIRS="$INCLUDEDIRS $adr"
2200            fi
2201        done
2202    fi
2203    
2204    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2205    echo "    of \"#define \"-type statements that are no longer allowed:"
2206    CPP_OPTIONS=
2207    CPP_EEOPTIONS=
2208    spaths=". $INCLUDEDIRS"
2209    names=`ls -1 "$ROOTDIR/pkg"`
2210    for i in $spaths ; do
2211        try="$i/CPP_OPTIONS.h"
2212        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2213            echo "    found CPP_OPTIONS=\"$try\""
2214            CPP_OPTIONS="$try"
2215            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2216            for n in $names ; do
2217                test_for_package_in_cpp_options $CPP_OPTIONS $n
2218            done
2219        fi
2220        try="$i/CPP_EEOPTIONS.h"
2221        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2222            echo "    found CPP_EEOPTIONS=\"$try\""
2223            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2224    #**** not yet enabled ****
2225    #        test_for_mpi_in_cpp_eeoptions $try
2226    #**** not yet enabled ****
2227            CPP_EEOPTIONS="$try"
2228      fi      fi
2229  done  done
2230    if test "x$CPP_OPTIONS" = x ; then
2231        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2232        exit 1
2233    fi
2234    
2235    #  Here, we build the list of files to be "run through" the adjoint
2236    #  compiler.
2237    if test -f ./adSrcFiles.tmp ; then
2238        rm -f ./adSrcFiles.tmp
2239    fi
2240    echo "  Creating the list of files for the adjoint compiler."
2241    for i in $SOURCEDIRS ; do
2242        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2243        for j in $list_files ; do
2244            cat $i/$j >> adSrcFiles.tmp
2245        done
2246    done
2247    if test ! "x"$FS = "x.f" ; then
2248        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2249        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2250    fi
2251    
2252  echo  echo
2253  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2254  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2255  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2256      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2257          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2258      fi      fi
2259  done  done
2260    
2261    if test ! "x$DIVA" = x ; then
2262        echo "  Creating the pseudo-MPI include directory"
2263        INCLUDES="-I./mpi_headers $INCLUDES"
2264        rm -rf ./mpi_headers
2265        mkdir -p ./mpi_headers
2266    
2267        if test "x$MPIINCLUDEDIR" = x ; then
2268            if test "x$MPIHOME" = x ; then
2269                MPIHOME='/usr'
2270            fi
2271            MPIINCLUDEDIR='$MPIHOME/include'
2272        fi
2273        
2274        if test -r $MPIINCLUDEDIR/mpif.h ; then
2275            for i in $MPI_HEADER_FILES; do
2276                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2277            done
2278    
2279            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2280        else
2281            echo " We cannot create a copy of mpif.h!"
2282    #       exit -1
2283        fi
2284    fi
2285    
2286  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2287  rm -rf .links.tmp  rm -rf .links.tmp
2288  mkdir .links.tmp  mkdir .links.tmp
2289    touch .links.tmp/foo
2290    if test ! -r ".links.tmp/foo" ; then
2291        echo
2292        echo "ERROR : something is wrong with your directory permissions or"
2293        echo "   your user file-creation mask (\"umask\") since creating a"
2294        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2295        echo "   not working.  Please try setting your umask to something"
2296        echo "   sane such as:"
2297        echo
2298        echo "      umask 0002"
2299        echo
2300        echo "   and please verify that you have the proper permissions for"
2301        echo "   creating sub-directories and then reading files created"
2302        echo "   within them."
2303        echo
2304        exit 1
2305    fi
2306    rm -f .links.tmp/foo
2307    
2308    if test "x$OPENAD" != x ; then
2309        OAD_DONT_COMPILE="/dev/null"
2310        OAD_DONT_TRANSFORM="/dev/null"
2311        OAD_KEEP_ORIGINAL="/dev/null"
2312        OAD_CB2M_FILES="/dev/null"
2313        echo "  looking for dontCompile file:  "
2314        for i in "." $MODS ; do
2315            if test -r $i"/dontCompile" ; then
2316                OAD_DONT_COMPILE=$i"/dontCompile"
2317                echo "     found $OAD_DONT_COMPILE"
2318                break
2319            fi
2320        done
2321        echo "  looking for dontTransform file:  "
2322        for i in "." $MODS ; do
2323            if test -r $i"/dontTransform" ; then
2324                OAD_DONT_TRANSFORM=$i"/dontTransform"
2325                echo "     found $OAD_DONT_TRANSFORM"
2326                break
2327            fi
2328        done
2329        echo "  looking for keepOriginal file:  "
2330        for i in "." $MODS ; do
2331            if test -r $i"/keepOriginal" ; then
2332                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2333                echo "     found $OAD_KEEP_ORIGINAL"
2334                break
2335            fi
2336        done
2337        echo "  looking for cb2mFiles:  "
2338        for i in "." $MODS ; do
2339            if test -r $i"/cb2mFiles" ; then
2340                OAD_CB2M_FILES=$i"/cb2mFiles"
2341                echo "     found $OAD_CB2M_FILES"
2342                break
2343            fi
2344        done
2345        echo "   OpenAD exceptions:  "
2346    fi
2347    
2348  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2349  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2350  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2351  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2352  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2353  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2354    printf 'H_SRC_FILES = '   > hsrclist.tmp
2355    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2356  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2357  for d in $alldirs ; do  for d in $alldirs ; do
2358      deplist=      deplist=
2359      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2360      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2361        if test "x$OPENAD" != x ; then
2362            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2363        fi
2364      for sf in $sfiles ; do      for sf in $sfiles ; do
2365          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2366              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2367                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2368                  touch .links.tmp/$sf                  case $d/$sf in
2369                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2370                  case $extn in                          ignore_f=t
2371                      F)                          ;;
2372                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2373                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2374                            ;;
2375                      ./FC_NAMEMANGLE.h)
2376                            ignore_f=t
2377                            ;;
2378                      ./BUILD_INFO.h)
2379                            ignore_f=t
2380                            ;;
2381                      ./EMBEDDED_FILES.h)
2382                            ignore_f=t
2383                            ;;
2384                      *)
2385                            #  For the local directory *ONLY*,
2386                            #  ignore all soft-links
2387                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2388                                ignore_f=t
2389                            else
2390                                touch .links.tmp/$sf
2391                                deplist="$deplist $sf"
2392                            fi
2393                            ;;
2394                    esac
2395                    if test "x$ignore_f" = xf ; then
2396                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2397                        case $extn in
2398                          F)
2399                            echo    " \\"  >> F77srclist.tmp
2400                            printf " $sf" >> F77srclist.tmp
2401                            if test "x$OPENAD" != x ; then
2402                                basename=${sf%%.F}
2403                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2404                                if test -z "$isAD" ; then
2405                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2406                                    if test -z "$toBeIgnored" ; then
2407                                        echo    " \\"  >> nonADF77srclist.tmp
2408                                        printf " $sf" >> nonADF77srclist.tmp
2409                                    else
2410                                        echo "    not to be compiled   :  $sf"
2411                                    fi
2412                                else # file is initially listed as an AD file we want to exclude it
2413                                     # or we want to retain the untransformed version
2414                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2415                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2416                                    if test -n "$notToBeTransformed"; then
2417                                        echo "    not to be transformed:  $sf"
2418                                    fi
2419                                    if test -n "$untransformedVersionToBeKept" ; then
2420                                        echo "    original to be kept  :  $sf"
2421                                    fi    
2422                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2423                                        echo    " \\"  >> nonADF77srclist.tmp
2424                                        printf " $sf" >> nonADF77srclist.tmp
2425                                    fi
2426                                fi
2427                            fi
2428                          ;;                          ;;
2429                      F90)                      F90)
2430                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2431                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2432                          ;;                          ;;
2433                      c)                      c)
2434                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2435                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2436                          ;;                          ;;
2437                      h)                      h)
2438                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2439                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2440                            ;;
2441                        flow)
2442                            echo    " \\"  >> ad_flow_files.tmp
2443                            printf " $sf" >> ad_flow_files.tmp
2444                          ;;                          ;;
2445                  esac                     esac
2446                    fi
2447              fi              fi
2448          fi          fi
2449      done      done
2450      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2451          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2452            echo "" >> srclinks.tmp
2453          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2454          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2455          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2456    # This may happen when make thinks that a header file has to be "remade"
2457    # because a module it depends on has changed.  In this case we do nothing.
2458            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2459          fi
2460      fi      fi
2461  done  done
2462  rm -rf .links.tmp  rm -rf .links.tmp
2463  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2464  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2465  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2466  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2467    echo "" >> hsrclist.tmp
2468    echo "" >> ad_flow_files.tmp
2469    
2470    CMDLINE=$0
2471    for xx in "$@" ; do nw=`echo $xx | wc -w`
2472        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2473                            else CMDLINE="$CMDLINE '$xx'" ; fi
2474    done
2475    
2476  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2477      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2478  fi  fi
2479  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 952  echo "#    $MACHINE" >> $MAKEFILE Line 2482  echo "#    $MACHINE" >> $MAKEFILE
2482  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2483  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2484  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2485  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2486  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2487  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2488    
2489    EXE_AD=$EXECUTABLE"_ad"
2490    EXE_FTL=$EXECUTABLE"_ftl"
2491    EXE_SVD=$EXECUTABLE"_svd"
2492    
2493  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2494    #
2495    # OPTFILE="$OPTFILE"
2496  #  #
2497  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2498  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 983  EXEDIR      = ${EXEDIR} Line 2520  EXEDIR      = ${EXEDIR}
2520  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2521  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2522    
2523    #eh3  new defines for the adjoint work
2524    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2525    EXE_AD      = ${EXE_AD}
2526    EXE_FTL     = ${EXE_FTL}
2527    EXE_SVD     = ${EXE_SVD}
2528    
2529    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2530    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2531    
2532    # These files are created by Makefile
2533    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2534  EOF  EOF
2535    
2536  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2537        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2538    else
2539        echo "EMBEDDED_FILES = " >>$MAKEFILE
2540    fi
2541    
2542  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2543  # Unix ln (link)  # Unix ln (link)
2544  LN = ${LN}  LN = ${LN}
# Line 1000  KPP = ${KPP} Line 2552  KPP = ${KPP}
2552  FC = ${FC}  FC = ${FC}
2553  # Fortran compiler  # Fortran compiler
2554  F90C = ${F90C}  F90C = ${F90C}
2555    # C compiler
2556    CC = ${CC}
2557  # Link editor  # Link editor
2558  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2559    
2560  # Defines for CPP  # Defines for CPP
2561  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1011  INCLUDES = ${INCLUDES} Line 2565  INCLUDES = ${INCLUDES}
2565  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2566  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2567  # Optim./debug for FC  # Optim./debug for FC
2568  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2569  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2570  # Optim./debug for FC  # Optim./debug for FC
2571  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2572  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2573    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2574  # Flags for CC  # Flags for CC
2575  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2576  # Files that should not be optimized  # Files that should not be optimized
2577  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2578  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2579  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2580  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2581  # Name of the Mekfile  # Name of the Mekfile
2582  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2583    
2584  EOF  EOF
2585    
2586  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2587  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2588  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2589  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2590  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2591  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2592  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2593    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2594  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2595    echo >> $MAKEFILE
2596    
2597    # add definitions for preprocessed sources
2598    # and note that not all systems allow case sensitive extensions
2599    # hence the $FS and $FS90 here.
2600    # for fixed format f90 files we use ff90 or FF90 resp
2601    # but these are not expected to be the original source files
2602    
2603    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2604    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2605    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2606    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2607    echo >> $MAKEFILE
2608    echo '.SUFFIXES:' >> $MAKEFILE
2609    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2610    
2611  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2612    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2613  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2614  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2615            @echo Creating \$@ ...
2616          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2617  depend:  depend:
2618          @make links          @make links
2619          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2620          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2621            -rm -f makedepend.out
2622    
2623    lib: libmitgcmuv.a
2624    
2625  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2626            ar rcv libmitgcmuv.a \$(OBJFILES)
2627            ar d   libmitgcmuv.a main.o
2628    
2629  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2630    
2631    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2632    
2633  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2634          @printf 'running ... '          @printf 'running ... '
2635          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2636    
2637  clean:  clean:
2638          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2639            -rm -rf *.o
2640            -rm -rf *.$FS *.flowdir
2641            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2642  Clean:  Clean:
2643          @make clean          @make clean
2644          @make cleanlinks          @make cleanlinks
2645          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
2646            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2647            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2648  CLEAN:  CLEAN:
2649          @make Clean          @make Clean
2650          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2651          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2652          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2653          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2654            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2655            -rm -rf mnc_test_*
2656    
2657    #eh3 Makefile: makefile
2658  makefile:  makefile:
2659          ${0} $@          $THIS_SCRIPT $G2ARGS
2660  cleanlinks:  cleanlinks:
2661          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2662    
2663  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2664  .F.f:  ${PACKAGES_DOT_H}:
2665            @echo Creating \$@ ...
2666            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2667    AD_CONFIG.h:
2668            @echo Creating \$@ ...
2669            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2670    FC_NAMEMANGLE.h:
2671            @echo Creating \$@ ...
2672            echo "$FC_NAMEMANGLE" > \$@
2673    
2674    BUILD_INFO.h:
2675            @echo Creating \$@ ...
2676    EOF
2677    
2678    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2679    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2680    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2681    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2682    
2683    if test "x$EMBED_SRC" = xt ; then
2684        cat >>$MAKEFILE <<EOF
2685    
2686    decode_files.o : EMBEDDED_FILES.h
2687    
2688    ##  \$(F77_PP_SRC_FILES)
2689    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2690            @echo Creating \$@ ...
2691            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2692            -rm -f all_fF.tar.gz
2693            -gzip all_fF.tar
2694    
2695    EMBEDDED_FILES.h : all_fF.tar.gz
2696            @echo Creating \$@ ...
2697            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2698    
2699    EOF
2700    fi
2701    
2702    cat >>$MAKEFILE <<EOF
2703    
2704    # The normal chain of rules is (  .F - .$FS - .o  )
2705    
2706    ## This nullifies any default implicit rules concerning these two file types:
2707    ## %.o : %.F
2708    
2709    .F.$FS:
2710          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2711  .f.o:  .$FS.o:
2712          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2713  .F90.f90:  .F90.$FS90:
2714          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2715  .f90.o:  .FF90.f$FS90:
2716            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2717    .$FS90.o:
2718          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2719    .f$FS90.o:
2720            cp \$< \$(basename  \$<).f90
2721            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2722  .c.o:  .c.o:
2723          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2724    .flow.flowdir:
2725            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2726    
2727  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2728  .F.p:  .F.p:
2729          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2730  .p.f:  .p.$FS:
2731          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2732    
2733  EOF  EOF
2734    
2735    #=========================================
2736    #===  Automatic Differentiation Rules  ===
2737    #===  for TAMC/TAF  ======================
2738    
2739    if test "x$OPENAD" = x ; then
2740    
2741    cat >>$MAKEFILE <<EOF
2742    
2743    TAMC           = ${TAMC}
2744    TAF            = ${TAF}
2745    
2746    TAF_EXTRA      = ${TAF_EXTRA}
2747    TAMC_EXTRA     = ${TAMC_EXTRA}
2748    
2749    EOF
2750    
2751    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2752    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2753    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2754    for i in $ad_vars ; do
2755        name=$i
2756        t1="t2=\$"`echo "$i"`
2757        eval $t1
2758        printf "%-20s = " $name >> $MAKEFILE
2759        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2760    done
2761    
2762    echo "  Add the source list for AD code generation"
2763    echo >> $MAKEFILE
2764    printf "AD_FILES = " >> $MAKEFILE
2765    AD_FILES=`cat adSrcFiles.tmp`
2766    for i in $AD_FILES ; do
2767        echo    " \\" >> $MAKEFILE
2768        printf " $i" >> $MAKEFILE
2769    done
2770    echo >> $MAKEFILE
2771    rm -f adSrcFiles.tmp
2772    
2773    cat >>$MAKEFILE <<EOF
2774    
2775    # ... AD ...
2776    adall: \$(EXE_AD)
2777    adtaf: ad_taf_output.$FS
2778    adtamc: ad_tamc_output.$FS
2779    
2780    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2781            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2782            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2783            -rm -f ad_config.template
2784            @make \$(F77_PP_SRC_FILES)
2785            @make \$(FLOFILES)
2786            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2787    
2788    ad_taf_output.$FS: ad_input_code.$FS
2789            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2790            ls -l ad_input_code_ad.$FS
2791            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2792    
2793    adtafonly:
2794            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2795            ls -l ad_input_code_ad.$FS
2796            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2797    
2798    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2799            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2800    
2801    ad_tamc_output.$FS: ad_input_code.$FS
2802            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2803            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2804    
2805    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2806            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2807    
2808    adonlyfwd:
2809            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2810    
2811    adtrick:
2812            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2813    
2814    # ... FTL ...
2815    ftlall: ftl_taf
2816    ftltaf: ftl_taf_output.$FS
2817    ftltamc: ftl_tamc_output.$FS
2818    
2819    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2820            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2821            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2822            -rm -f ftl_config.template
2823            @make \$(F77_PP_SRC_FILES)
2824            @make \$(AD_FLOW_FILES)
2825            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2826    
2827    ftl_taf_output.$FS: ftl_input_code.$FS
2828            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2829            ls -l ftl_input_code_ftl.$FS
2830            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2831    
2832    ftltafonly:
2833            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2834            ls -l ftl_input_code_ftl.$FS
2835            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2836    
2837    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2838            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2839    
2840    ftl_tamc_output.$FS: ftl_input_code.$FS
2841            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2842            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2843    
2844    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2845            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2846    
2847    
2848    # ... SVD ...
2849    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2850            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2851            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2852    svdall: svd_touch svd_taf
2853    
2854    svd_taf: \$(OBJFILES)
2855            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2856    
2857            @echo "--->>> Only COMPILE svd code! <<<---"
2858            @echo "--->>> Assumes you previously <<<---"
2859            @echo "--->>> did make svdtaf        <<<---"
2860    
2861    svd_touch:
2862            @echo "--->>> Only COMPILE svd code! <<<---"
2863            @echo "--->>> Assumes you previously <<<---"
2864            @echo "--->>> did make svdtaf        <<<---"
2865            touch ad_taf_output.$FS ftl_taf_output.$FS
2866            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2867            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2868            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2869            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2870            -rm -f ftl_config.template
2871    
2872    EOF
2873    
2874    fi
2875    
2876    #===  for OpenAD  ========================
2877    
2878    if test "x$OPENAD" != x ; then
2879    
2880    # ============ begin OpenAD specific section ==============
2881    
2882    cat >>$MAKEFILE <<EOF
2883    
2884    # all the source files linked from the various locations:
2885    ALL_LINKED_FILES= \
2886    \$(F77_SRC_FILES) \
2887    \$(C_SRC_FILES) \
2888    \$(H_SRC_FILES) \
2889    \$(F90_SRC_FILES) \
2890    \$(SPECIAL_FILES)
2891    
2892    ifndef OPENADROOT
2893      \$(error "Error:  environment variable OPENADROOT not defined!")
2894    endif
2895    
2896    ifndef XAIFSCHEMAROOT
2897      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2898    endif
2899    
2900    ifndef XAIFBOOSTERROOT
2901      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2902    endif
2903    
2904    EOF
2905    
2906    echo "  Add the source list for common block to module conversion "
2907    echo >> $MAKEFILE
2908    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2909    for i in `cat ${OAD_CB2M_FILES}` ; do
2910      echo    " \\" >> $MAKEFILE
2911      printf " $i" >> $MAKEFILE
2912    done
2913    echo >> $MAKEFILE
2914    
2915    echo "  Add the source list for AD code generation"
2916    echo >> $MAKEFILE
2917    printf "AD_FILES = " >> $MAKEFILE
2918    for i in `cat ${OAD_CB2M_FILES}` ; do
2919      echo    " \\" >> $MAKEFILE
2920      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2921    done
2922    AD_FILES=`cat adSrcFiles.tmp`
2923    for i in $AD_FILES ; do
2924      basename=${i%%.f}
2925      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2926      if test -z "$toBeIgnored" ; then
2927        echo    " \\" >> $MAKEFILE
2928        printf " $i" >> $MAKEFILE
2929      fi
2930    done
2931    echo >> $MAKEFILE
2932    rm -f adSrcFiles.tmp
2933    
2934    cat >>$MAKEFILE <<EOF
2935    
2936    adAll: \$(EXE_AD)
2937    .PHONY: adAll
2938    
2939    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2940    
2941    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2942    
2943    .PHONY: adDepend
2944    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2945            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2946            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2947            -rm -f makedepend.out
2948    
2949    OPENAD_SUPPORT_F90_SRC_FILES = \
2950    w2f__types.F90 \
2951    OAD_active.F90 \
2952    OAD_cp.F90 \
2953    OAD_rev.F90 \
2954    OAD_tape.F90        
2955    
2956    OPENAD_SUPPORT_C_SRC_FILES = \
2957    iaddr.c \
2958    timeRatio.c
2959    
2960    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2961            cat \$^ > \$@
2962    
2963    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2964            cat \$^ > \$@
2965    
2966    f95_test.out: f95_test_mods.f90 f95_test.f90
2967            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2968            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2969    
2970    # the file included below is created by the
2971    # postProcessor and its inclusion sets the
2972    # variable POSTPROCESSEDFILES
2973    # used below. Because the file is made during
2974    # make it won't be read until the second (recursive)
2975    # invocation in the rule below
2976    -include postProcess.make
2977    
2978    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
2979    
2980    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2981    
2982    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
2983    ifeq (\$(MAKELEVEL),0)
2984            \$(MAKE) adAll
2985    else
2986            touch \$@
2987    endif
2988    
2989    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
2990    ifeq (\$(MAKELEVEL),1)
2991            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
2992    else
2993            touch \$@
2994    endif
2995    
2996    # makefile debug rule
2997    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2998    .PHONY: openad
2999    
3000    # create the module files
3001    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3002            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3003    
3004    # create the header files
3005    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3006            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3007    
3008    # change everybody else to use the new module files:
3009    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3010            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3011    
3012    # makefile debug rule
3013    small_f: \$(CB2M_F90_PP_SRC_FILES)
3014    .PHONY: small_f
3015    
3016    ad_output.txt: \$(EXE_AD)
3017            @printf 'linking data files ... '
3018            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3019            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3020            @printf 'running ... '
3021            @./\$(EXE_AD) > \$@
3022    
3023    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3024    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3025            cat \$^ > \$@
3026    
3027    # strip all comments and blanks to reduce
3028    # the file size in order to reduce perl's memory requirements
3029    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3030            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3031    
3032    # mfef90 preprocessing
3033    # expand statement functions
3034    # expose mfef90 specific substring handling
3035    # add the w2f__types module
3036    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3037            ./mfef90 -r8 -z -F -N132 \$<
3038            mv \$<.B \$(basename \$<).B
3039            ./whirl2f -openad \$(basename \$<).B
3040            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3041    
3042    # canonicalizer
3043    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3044            ./preProcess.py --timing -H -S \$< -o \$@
3045    
3046    # F -> WHIRL
3047    # note that the canonicalized version cuts off at col 72
3048    # doing this also for string constants which is ok as long
3049    # as we are in fixed mode and cut of exactly there.
3050    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3051    # characters respectively.
3052    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3053            ./mfef90 -r8 -z -F \$<
3054            mv \$<.B \$@
3055    
3056    # WHIRL -> XAIF
3057    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3058            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3059    
3060    # XAIF -> XAIF'
3061    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3062            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3063    
3064    # XAIF' -> WHIRL'
3065    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3066            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3067    
3068    # WHIRL' -> F'
3069    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3070            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3071    
3072    # insert template directives
3073    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3074            ../OAD_support/insertTemplateDir.bash \$< \$@
3075    
3076    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3077    # postprocess F'
3078    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3079            # the target is a placeholder to signal execution of the rule
3080            touch \$@
3081            # this step also creates the file postProcess.make but we cannot
3082            # name it as the target or else make will try to remake it for
3083            # the include directive above for any rule, e.g. make clean
3084            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3085    
3086    # setup some links
3087    %.xsd:
3088            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3089    
3090    mfef90:
3091            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3092    
3093    # link the support files:
3094    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3095            \$(LN) ../OAD_support/\$@ .
3096    
3097    whirl2xaif xaif2whirl:
3098            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3099    
3100    preProcess.py postProcess.py:
3101            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3102    
3103    whirl2f whirl2f_be:
3104            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3105    
3106    oadDriver:
3107            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3108    
3109    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3110    
3111    # ============ end OpenAD specific section ==============
3112    
3113    EOF
3114    
3115    fi
3116    
3117    #=========================================
3118    
3119  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3120      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3121  fi  fi
# Line 1108  for i in $KPPFILES ; do Line 3127  for i in $KPPFILES ; do
3127      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3128          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3129      fi      fi
3130      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3131  done  done
3132    
3133  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1118  for i in $NOOPTFILES ; do Line 3137  for i in $NOOPTFILES ; do
3137      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3138          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3139      fi      fi
3140      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3141      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3142  done  done
3143    
# Line 1131  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3150  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3150    
3151  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3152    
3153    # Create special header files
3154    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3155    if test ! -f $PACKAGES_DOT_H ; then
3156        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3157    else
3158        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3159        RETVAL=$?
3160        if test "x$RETVAL" = x0 ; then
3161            rm -f $PACKAGES_DOT_H".tmp"
3162        else
3163            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3164            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3165        fi
3166    fi
3167    if test ! -f AD_CONFIG.h ; then
3168        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3169    fi
3170    
3171    
3172  #  Write the "state" for future records  #  Write the "state" for future records
3173  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3174      echo -n "" > gm_state      printf "" > genmake_state
3175      for i in $gm_state ; do      for i in $gm_state ; do
3176          t1="t2=\$$i"          t1="t2=\$$i"
3177          eval $t1          eval $t1
3178          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
3179      done      done
3180  fi  fi

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