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revision 1.108 by edhill, Thu Oct 21 13:38:46 2004 UTC revision 1.268 by jmc, Sun Aug 10 16:46:04 2014 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
26          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
27              Use "NAME" as the adoptfile.  By default, the file at
28              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
29              "tools/adjoint_options/adjoint_default" will be used.
30    
31        -nooptfile | --nooptfile
32          -optfile NAME | --optfile NAME | -of NAME | --of NAME
33          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
34              Use "NAME" as the optfile.  By default, an attempt will be
35              made to find an appropriate "standard" optfile in the
36              tools/build_options/ directory.
37    
38        -pdepend NAME | --pdepend NAME
39          -pdepend=NAME | --pdepend=NAME
40              Get package dependency information from "NAME".
41    
42        -pgroups NAME | --pgroups NAME
43          -pgroups=NAME | --pgroups=NAME
44              Get the package groups information from "NAME".
45    
46        -bash NAME
47              Explicitly specify the Bourne or BASH shell to use
48    
49        -make NAME | -m NAME
50          --make=NAME | -m=NAME
51              Use "NAME" for the MAKE program. The default is "make" but
52              many platforms, "gmake" is the preferred choice.
53    
54        -makefile NAME | -mf NAME
55          --makefile=NAME | -mf=NAME
56              Call the makefile "NAME".  The default is "Makefile".
57    
58        -makedepend NAME | -md NAME
59          --makedepend=NAME | -md=NAME
60              Use "NAME" for the MAKEDEPEND program.
61    
62        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
63          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
64              Specify the location of the MITgcm ROOTDIR as "NAME".
65              By default, genamke will try to find the location by
66              looking in parent directories (up to the 5th parent).
67    
68        -mods NAME | --mods NAME | -mo NAME | --mo NAME
69          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
70              Here, "NAME" specifies a list of directories that are
71              used for additional source code.  Files found in the
72              "mods list" are given preference over files of the same
73              name found elsewhere.
74    
75        -disable NAME | --disable NAME
76          -disable=NAME | --disable=NAME
77              Here "NAME" specifies a list of packages that we don't
78              want to use.  If this violates package dependencies,
79              genamke will exit with an error message.
80    
81        -enable NAME | --enable NAME
82          -enable=NAME | --enable=NAME
83              Here "NAME" specifies a list of packages that we wish
84              to specifically enable.  If this violates package
85              dependencies, genamke will exit with an error message.
86    
87        -standarddirs NAME | --standarddirs NAME
88          -standarddirs=NAME | --standarddirs=NAME
89              Here, "NAME" specifies a list of directories to be
90              used as the "standard" code.
91    
92        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
93          -fc=NAME | --fc=NAME
94              Use "NAME" as the fortran compiler.  By default, genmake
95              will search for a working compiler by trying a list of
96              "usual suspects" such as g77, f77, etc.
97    
98        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
99              Use "NAME" as the C compiler.  By default, genmake
100              will search for a working compiler by trying a list of
101              "usual suspects" such as gcc, c89, cc, etc.
102    
103        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
104              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
105              *only* works if CPP_EEOPTIONS.h allows this.
106    
107        -ignoretime | -ignore_time | --ignoretime | --ignore_time
108              Ignore all the "wall clock" routines entirely.  This will
109              not in any way hurt the model results -- it simply means
110              that the code that checks how long the model spends in
111              various routines will give junk values.
112    
113        -ts | --ts
114              Produce timing information per timestep
115        -papis | --papis
116              Produce summary MFlop/s (and IPC) with PAPI per timestep
117        -pcls | --pcls
118              Produce summary MFlop/s etc. with PCL per timestep
119        -foolad | --foolad
120              Fool the AD code generator
121        -papi | --papi
122              Performance analysis with PAPI
123        -pcl | --pcl
124              Performance analysis with PCL
125        -hpmt | --hpmt
126              Performance analysis with the HPM Toolkit
127    
128        -ieee | --ieee
129              use IEEE numerics.  Note that this option *only* works
130              if it is supported by the OPTFILE that is being used.
131        -devel | --devel
132              Add additional warning and debugging flags for development
133              (if supported by the OPTFILE); also switch to IEEE numerics.
134        -gsl | --gsl
135              Use GSL to control floating point rounding and precision
136    
137        -mpi | --mpi
138              Include MPI header files and link to MPI libraries
139        -mpi=PATH | --mpi=PATH
140              Include MPI header files and link to MPI libraries using MPI_ROOT
141              set to PATH. i.e. Include files from \$PATH/include, link to libraries
142              from \$PATH/lib and use binaries from \$PATH/bin.
143    
144        -omp | --omp
145              Activate OpenMP code + use Compiler option OMPFLAG
146        -omp=OMPFLAG | --omp=OMPFLAG
147              Activate OpenMP code + use Compiler option OMPFLAG
148    
149        -es | --es | -embed-source | --embed-source
150              Embed a tarball containing the full source code
151              (including the Makefile, etc.) used to build the
152              executable [off by default]
153    
154        -ds | --ds
155              Report genmake internal variables status (DUMPSTATE)
156              to file "genmake_state" (for debug purpose)
157    
158      While it is most often a single word, the "NAME" variables specified
159      above can in many cases be a space-delimited string such as:
160    
161        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
162        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
163        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
164    
165      which, depending upon your shell, may need to be single-quoted.
166    
167      For more detailed genmake documentation, please see:
168    
169        http://mitgcm.org/public/devel_HOWTO/
170    
171    EOF
172    
173        exit 1
174    }
175    
176  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
177  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
178  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
179      cpp_options=$1      cpp_options=$1
180      pkg=$2      pkg=$2
181      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
182      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
183      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
184      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
193  }  }
194    
195  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 197  test_for_mpi_in_cpp_eeoptions() {
197  test_for_string_in_file() {  test_for_string_in_file() {
198      file=$1      file=$1
199      strng=$2      strng=$2
200      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
201      RETVAL=$?      RETVAL=$?
202      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
203          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
204          grep -i "$strng" $file          grep -i "$strng" $file
205          return 1          exit 99
206      fi      fi
207      return 0      return 0
208  }  }
# Line 48  test_for_string_in_file() { Line 211  test_for_string_in_file() {
211  # the package list.  # the package list.
212  expand_pkg_groups() {  expand_pkg_groups() {
213      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
214      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
215          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
216          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
217          matched=0          matched=0
218          for i in $PACKAGES ; do          for i in $PACKAGES ; do
219              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
220              RETVAL=$?              RETVAL=$?
221              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
222                  matched=1                  matched=1
223                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
224                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
225                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
226              else              else
227                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
228              fi              fi
229          done          done
230          PACKAGES=$new_packages          PACKAGES=$new_packages
231          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
232          return $matched          return $matched
233      else      else
234          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 102  EOF Line 264  EOF
264              check_for_broken_Ff              check_for_broken_Ff
265          else          else
266              cat <<EOF 2>&1              cat <<EOF 2>&1
267  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
268    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
269    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
270    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
271    
272  EOF  EOF
# Line 122  EOF Line 284  EOF
284        stop        stop
285        end        end
286  EOF  EOF
287      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
288      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
289  .SUFFIXES:  .SUFFIXES:
290  .SUFFIXES: .$tfs .F  .SUFFIXES: .$tfs .F
291  .F.$tfs:  .F.$tfs:
292          $LN \$< \$@          $LN \$< \$@
293  EOF  EOF
294      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
295      RETVAL=$?      RETVAL=$?
296      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
297          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 299  EOF
299              FS90='fr9'              FS90='fr9'
300              check_for_broken_Ff              check_for_broken_Ff
301          else          else
302              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
303  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
304    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
305    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
306    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
307                echo ""
 EOF  
308              exit -1              exit -1
309              return              return
310          fi          fi
311      fi      fi
312      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
313      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
314    
315      #  If we make it here, use the extensions      #  If we make it here, use the extensions
316      FS=$tfs      FS=$tfs
# Line 157  EOF Line 318  EOF
318      return      return
319  }  }
320    
   
321  look_for_makedepend()  {  look_for_makedepend()  {
322    
323      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 168  look_for_makedepend()  { Line 328  look_for_makedepend()  {
328      #      #
329      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
330      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
331      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
332      #      #
333      #  So the choices are, in order:      #  So the choices are, in order:
     #  
334      #    1) use the user-specified program      #    1) use the user-specified program
335      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
336      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
337      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
338        #             (faster, but can miss some dependencies)
339      #      #
340        echo >> $LOGFILE
341        echo "running: look_for_makedepend()" >> $LOGFILE
342        if test "x${MAKEDEPEND}" != x ; then
343            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
344            RETVAL=$?
345            if test x"$RETVAL" = x0 ; then
346                build_cyrus_makedepend
347                RETVAL=$?
348                if test "x$RETVAL" != x0 ; then
349                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
350                    MAKEDEPEND=
351                fi
352            else
353                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
354                RETVAL=$?
355                if test "x$RETVAL" = x0 ; then
356                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
357                fi
358                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
359            fi
360        fi
361      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
362          which makedepend > /dev/null 2>&1          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
363          RV0=$?          #  echo 'MAKEFILE="'$MAKEFILE'"'
364            cat <<EOF >> $MAKEFILE
365    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
366    #
367    #   Some "makedepend" implementations will die if they cannot
368    #   find a Makefile -- so this file is here to gives them an
369    #   empty one to find and parse.
370    EOF
371          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
372        program test        program test
373        write(*,*) 'test'        write(*,*) 'test'
374        stop        stop
375        end        end
376  EOF  EOF
377          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
378          RV1=$?          RV1=$?
379          if test "x${RV0}${RV1}" = x00 ; then          which makedepend > /dev/null 2>&1
380            RV2=$?
381            if test "x${RV2}" = x0 ; then
382                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
383                RV3=$? ; loc_msg='not working.'
384            else RV3=$RV2 ; loc_msg='not found.'
385            fi
386            test -f $MAKEFILE  &&  rm -f $MAKEFILE
387            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
388            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
389            if test "x${RV1}" = x0 ; then
390                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            elif test "x${RV3}" = x0 ; then
393                echo "    local tools/xmakedepend not working. Use system-default makedepend"
394              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396          else          else
397              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
398                            echo -n "    Try to build cyrus-makedepend ..."
399              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
400              build_cyrus_makedepend              build_cyrus_makedepend
401              RETVAL=$?              RETVAL=$?
402              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
403                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
404                else
405                    echo "  Fails" ; echo "" >> $LOGFILE
406                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
407                    echo ""
408                    exit -1
409                    return
410              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
411          fi          fi
412      fi      fi
413  }  }
414    
   
415  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
416        echo >> $LOGFILE
417        echo "running: build_cyrus_makedepend()" >> $LOGFILE
418      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
419      (      (
420          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
421              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
422              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
423          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
424              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
425          fi          fi
# Line 230  build_cyrus_makedepend()  { Line 431  build_cyrus_makedepend()  {
431      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
432      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
433          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
434            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
435          return 0          return 0
436      else      else
437          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
438          return 1          return 1
439      fi      fi
440  }  }
441    
442  # Guess possible config options for this host  build_embed_encode()
443  find_possible_configs()  {  {
444        printf "  building the embed-encode utility...  "
445      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
446      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
447      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
448      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
449      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
450      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
451      PLATFORM=$tmp3              return 1
452      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
453      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
454      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
455                    comm="$ic -o encode_files encode_files.c"
456      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
457      ln -s ./test link              RETVAL=$?
458      RETVAL=$?              if test "x$RETVAL" = x0 ; then
459      if test "x${RETVAL}" = x0 ; then                  echo "OK"
460          LN="ln -s"                  return 0
461      else              fi
462          echo "Error: \"ln -s\" does not appear to work on this system!"          done
463          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
464          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
465      fi          echo "      so it has been disabled"
466      rm -f test link          echo
467            EMBED_SRC=f
468      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
469      fi      fi
470        echo "OK"
471    }
472    
473      look_for_makedepend  #  look for possible C compilers
474    look_for_C_compilers() {
475      #================================================================      echo >> $LOGFILE
476      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
477      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
478      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
479  #include <stdio.h>  #include <stdio.h>
480  int main(int argc, char **argv) {  int main(int argc, char **argv) {
481    printf("Hello!\n");    printf("Hello!\n");
482    return 0;    return 0;
483  }  }
484  EOF  EOF
485          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
486        p_CC=
487        for c in $tmp ; do
488            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
489            echo $COMM >> $LOGFILE
490            $COMM >> $LOGFILE 2>&1
491          RETVAL=$?          RETVAL=$?
492          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
493                echo " $c test successful" >> $LOGFILE
494              p_CC="$p_CC $c"              p_CC="$p_CC $c"
495          fi          fi
496      done      done
# Line 300  Error: No C compilers were found in your Line 506  Error: No C compilers were found in your
506  EOF  EOF
507          exit 1          exit 1
508      else      else
509          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
510          if test "x$CC" = x ; then          if test "x$CC" = x ; then
511              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
512              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
513          fi          fi
514      fi      fi
515        echo " --> set CC='$CC'" >> $LOGFILE
516    }
517    
518    # Guess possible config options for this host
519    find_possible_optfile()  {
520    
521        echo >> $LOGFILE
522        echo "running: find_possible_optfile()" >> $LOGFILE
523        tmp1=`uname`"_"`uname -m`
524        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
525        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
526        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
527        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
528        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
529        PLATFORM=$tmp3
530        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
531        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
532        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
533    
534      #================================================================      #================================================================
535      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
536      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
537        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
538      p_FC=      p_FC=
539      for c in $tmp ; do      rm -f ./genmake_hello.f
540          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
541        program hello        program hello
542        do i=1,3        do i=1,3
543          print *, 'hello world : ', i          print *, 'hello world : ', i
544        enddo        enddo
545        end        end
546  EOF  EOF
547          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
548            COMM="$f -o genmake_hello genmake_hello.f"
549            echo $COMM >> $LOGFILE
550            $COMM >> $LOGFILE 2>&1
551          RETVAL=$?          RETVAL=$?
552          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
553              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
554                p_FC="$p_FC $f"
555          fi          fi
556      done      done
557      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
558      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
559          cat 1>&2 <<EOF          cat 1>&2 <<EOF
560    
# Line 340  Error: No Fortran compilers were found i Line 567  Error: No Fortran compilers were found i
567  EOF  EOF
568          exit 1          exit 1
569      else      else
570          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
571          echo "   "$p_FC      fi
572          if test "x$FC" = x ; then  
573              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
574              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
575          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
576            for i in $p_FC ; do
577                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
578                if test -r $OPTFILE ; then
579                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
580                    break
581                fi
582            done
583      fi      fi
584    
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
587          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
588               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
589          fi          fi
590      fi      fi
591  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
592      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
593          cat 1>&2 <<EOF          cat 1>&2 <<EOF
594    
# Line 380  Error: No options file was found in:  $R Line 604  Error: No options file was found in:  $R
604  EOF  EOF
605          exit 1          exit 1
606      fi      fi
607        }
608  #     # look for possible MPI libraries  
609  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
610  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
611  #     RETVAL=$?  mpi_headers_do_local_copy() {
612  #     if test "x${RETVAL}" = x0 ; then  
613  #       cat >>test.f <<EOF      dBug=0
614  #       PROGRAM HELLO      rm -rf ./mpi_headers
615  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
616  #       PRINT *,'Hello World'  
617  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
618  #       STOP          echo -n '  Check MPI headers ... '
619  #       END          listIni=$MPI_HEADER_FILES
620  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
621  #       eval "$mpi_fort -showme test.f > out"          outp=$?
622  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
623  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
624  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
625  #           for i in $a ; do  
626  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
627  #                   -*)          while test $doCheck = 1 ; do
628  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
629  #               esac            for i in $list2check ; do
630  #           done              if test -f $MPIINCLUDEDIR/$i ; then
631  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
632  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
633  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
634  #       rm -f test.f out                for j in $newInc ; do
635  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
636                    outp=$?
637                    if test $outp != 0 ; then
638                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
639                      newList="$newList $j"
640                    fi
641                  done
642                  if test $dBug = 1 ; then echo "" ; fi
643                fi
644              done
645              if test "x$newList" = x ; then doCheck=0
646              else list2check=$newList ; list2copy="$list2copy $newList"
647              fi
648            done
649            list2copy="$MPI_HEADER_FILES $list2copy"
650            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
651    
652            #----- create local mpi_headers dir if we have files to copy
653            mkListInc=`echo $list2copy | wc -w`
654            if test $mkListInc != 0 ; then
655              echo 'create local "./mpi_headers" dir'
656              mkdir -p ./mpi_headers
657              INCLUDES="-I./mpi_headers $INCLUDES"
658              mkListInc=1
659            fi
660            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
661    
662            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
663            for i in $list2copy ; do
664              if test -f $MPIINCLUDEDIR/$i ; then
665                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
666                if test $i = 'mpif.h' ; then
667                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
668                fi
669                if test $mkListInc = 2 ; then
670                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
671                fi
672                if test $mkListInc = 1 ; then
673                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
674                fi
675              fi
676            done
677        else
678            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
679            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
680    #       exit -1
681        fi
682  }  }
683    
684  #  Parse the package dependency information  #  Parse the package dependency information
# Line 418  get_pdepend_list()  { Line 687  get_pdepend_list()  {
687      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
688      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
689      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
690          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
691          > ./.pd_tmp          > ./.pd_tmp
692        RETVAL=$?
693        if test ! "x${RETVAL}" = x0 ; then
694          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
695          exit 1
696        fi
697      . ./.pd_tmp      . ./.pd_tmp
698      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
699  }  }
700    
701  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 549  get_fortran_c_namemangling()  { Line 703  get_fortran_c_namemangling()  {
703    
704      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
705      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
706          return 0          return 0
707      fi      fi
708        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
709    
710      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
711        
712      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
713  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
714  EOF  EOF
715      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
716        echo ' '$COMM >> $LOGFILE
717        $COMM >> $LOGFILE 2>&1
718      RETVAL=$?      RETVAL=$?
719      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
720          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
721          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
722    
723  WARNING: C test compile fails   WARNING: C test compile fails
724  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
725  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
726  EOF  EOF
727          return 1          return 1
728      fi      fi
# Line 573  EOF Line 730  EOF
730      RETVAL=$?      RETVAL=$?
731      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
732          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
733          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
734    
735  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
736  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
737  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
738  EOF  EOF
739          return 1          return 1
740      fi      fi
741      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
742        subroutine tcall( string )        subroutine tcall( string )
743        character*(*) string        character*(*) string
744        call tsub( string )        call tsub( string )
745        end        end
746  EOF  EOF
747      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
748        echo ' '$COMM >> $LOGFILE
749        $COMM >> $LOGFILE 2>&1
750      RETVAL=$?      RETVAL=$?
751      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
752          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
753          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
754    
755  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
756  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
757  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
758  EOF  EOF
759          return 1          return 1
760      fi      fi
# Line 603  EOF Line 762  EOF
762      RETVAL=$?      RETVAL=$?
763      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
764          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
765          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
766    
767  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
768  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
769  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
770  EOF  EOF
771          return 1          return 1
772      fi      fi
# Line 633  EOF Line 792  EOF
792    
793      #  cleanup the testing files      #  cleanup the testing files
794      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
795    
796        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
797    }
798    
799  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
800        echo >> $LOGFILE
801        echo "running: check_HAVE_CLOC()" >> $LOGFILE
802      get_fortran_c_namemangling      get_fortran_c_namemangling
803      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
804  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 815  void FC_NAMEMANGLE(cloc) ( double *curti
815   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
816  }  }
817  EOF  EOF
818      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
819        echo $COMM >> $LOGFILE
820        $COMM >> $LOGFILE 2>&1
821      RET_C=$?      RET_C=$?
822      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
823        program hello        program hello
824        Real*8 wtime        REAL*8 wtime
825        external cloc        external cloc
826        call cloc(wtime)        call cloc(wtime)
827        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
828        end program hello        end
829  EOF  EOF
830      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> $LOGFILE
832        $COMM >> $LOGFILE 2>&1
833      RET_F=$?      RET_F=$?
834      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
835      RETVAL=$?      RETVAL=$?
836      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
837          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
838      fi      fi
839      rm -f genmake_tc*      rm -f genmake_tc*
840        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
841    }
842    
843    check_HAVE_SIGREG()  {
844        if test ! "x$HAVE_SIGREG" = x ; then
845            return
846        fi
847        echo >> $LOGFILE
848        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
849        get_fortran_c_namemangling
850        cat <<EOF > genmake_tc_1.c
851    $FC_NAMEMANGLE
852    #include <stdlib.h>
853    #include <stdio.h>
854    #include <signal.h>
855    #include <errno.h>
856    #include <ucontext.h>
857    
858    int * ip;
859    
860    static void killhandler(
861        unsigned int sn, siginfo_t  si, struct ucontext *sc )
862    {
863        *ip = *ip + 1;
864        return;
865    }
866    
867    void FC_NAMEMANGLE(sigreg) (int * aip)
868    {
869        struct sigaction s;
870        ip = aip;
871        s.sa_flags = SA_SIGINFO;
872        s.sa_sigaction = (void *)killhandler;
873        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
874            printf("Sigaction returned error = %d\n", errno);
875            exit(0);
876        }
877        return;
878    }
879    EOF
880        COMM="$CC $CFLAGS -c genmake_tc_1.c"
881        echo $COMM >> $LOGFILE
882        $COMM >> $LOGFILE 2>&1
883        RET_C=$?
884        cat <<EOF > genmake_tc_2.$FS
885          program hello
886          integer anint
887          common /iv/ anint
888          external sigreg
889          call sigreg(anint)
890          end
891    EOF
892        cat genmake_tc_2.$FS >> $LOGFILE
893        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
894        echo $COMM >> $LOGFILE
895        $COMM >> $LOGFILE 2>&1
896        RETVAL=$?
897        if test "x$RETVAL" = x0 ; then
898            HAVE_SIGREG=t
899        fi
900        rm -f genmake_tc*
901        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
902  }  }
903    
904    check_HAVE_SETRLSTK()  {
905        if test ! "x$HAVE_SETRLSTK" = x ; then
906            return
907        fi
908        echo >> $LOGFILE
909        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
910        get_fortran_c_namemangling
911        cat <<EOF > genmake_tc_1.c
912    $FC_NAMEMANGLE
913    #include <sys/time.h>
914    #include <sys/resource.h>
915    #include <unistd.h>
916    void FC_NAMEMANGLE(setrlstk) ()
917    {
918        struct rlimit rls;
919        rls.rlim_cur = RLIM_INFINITY;
920        rls.rlim_max = RLIM_INFINITY;
921        setrlimit(RLIMIT_STACK, &rls);
922        return;
923    }
924    EOF
925        COMM="$CC $CFLAGS -c genmake_tc_1.c"
926        echo $COMM >> $LOGFILE
927        $COMM >> $LOGFILE 2>&1
928        RET_C=$?
929        cat <<EOF > genmake_tc_2.$FS
930          program hello
931          external setrlstk
932          call setrlstk()
933          end
934    EOF
935        cat genmake_tc_2.$FS >> $LOGFILE
936        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
937        echo $COMM >> $LOGFILE
938        $COMM >> $LOGFILE 2>&1
939        RETVAL=$?
940        if test "x$RETVAL" = x0 ; then
941            HAVE_SETRLSTK=t
942        fi
943        rm -f genmake_tc*
944        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
945    }
946    
947  check_HAVE_STAT()  {  check_HAVE_STAT()  {
948        echo >> $LOGFILE
949        echo "running: check_HAVE_STAT()" >> $LOGFILE
950      get_fortran_c_namemangling      get_fortran_c_namemangling
951      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
952  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 696  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 967  void FC_NAMEMANGLE(tfsize) ( int *nbyte
967          *nbyte = -1;          *nbyte = -1;
968  }  }
969  EOF  EOF
970      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
971        echo $COMM >> $LOGFILE
972        $COMM >> genmake_tc.log 2>&1
973      RET_C=$?      RET_C=$?
974      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
975        program hello        program hello
976        integer nbyte        integer nbyte
977        call tfsize(nbyte)        call tfsize(nbyte)
978        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
979        end program hello        end
980  EOF  EOF
981      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      cat genmake_tc_2.$FS >> $LOGFILE
982      RET_F=$?      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
983      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      echo $COMM >> $LOGFILE
984        $COMM >> genmake_tc.log 2>&1
985      RETVAL=$?      RETVAL=$?
986      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
987          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
988      fi      fi
989      rm -f genmake_tc*      rm -f genmake_tc*
990        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
991  }  }
992    
   
993  check_netcdf_libs()  {  check_netcdf_libs()  {
994      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
995      cat <<EOF > genmake_tnc.for          return
996        fi
997        echo >> $LOGFILE
998        echo "running: check_netcdf_libs()" >> $LOGFILE
999        cat <<EOF > genmake_tnc.F
1000        program fgennc        program fgennc
1001  #include "netcdf.inc"  #include "netcdf.inc"
1002    EOF
1003       #if test ! "x$MPI" = x ; then
1004       #    echo '#include "mpif.h"' >> genmake_tnc.F
1005       #fi
1006        cat <<EOF >> genmake_tnc.F
1007        integer iret, ncid, xid        integer iret, ncid, xid
1008        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1009        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 731  check_netcdf_libs()  { Line 1013  check_netcdf_libs()  {
1013        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014        end        end
1015  EOF  EOF
1016      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1017      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
1018      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1019      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
1020          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1021          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1      echo "$COMM" >> genmake_tnc.log
1022        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1023        if test "x$RET_CPP" = xf ; then
1024            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1025                >> genmake_tnc.log
1026            echo "    Please check that \$INCLUDES is properly set." \
1027                >> genmake_tnc.log
1028        fi
1029        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1030        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1031        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1032            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1033      RET_COMPILE=$?      RET_COMPILE=$?
1034        cat genmake_tnc.log >> $LOGFILE
1035    
1036      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1037      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 748  EOF Line 1042  EOF
1042    
1043      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1044          HAVE_NETCDF=t          HAVE_NETCDF=t
1045            echo "check_netcdf: successful" >> $LOGFILE
1046      else      else
1047          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1048          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1049              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1050              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1051            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1052            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1053                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1054                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1055          RET_COMPILE=$?          RET_COMPILE=$?
1056            echo >> $LOGFILE
1057            cat genmake_tnc.log >> $LOGFILE
1058          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1059              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1060              HAVE_NETCDF=t              HAVE_NETCDF=t
1061                echo "check_netcdf: successful" >> $LOGFILE
1062          else          else
1063              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
1064                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1065                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1066                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1067                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1068                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1069                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1070                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1071                RET_COMPILE=$?
1072                echo >> $LOGFILE
1073                cat genmake_tnc.log >> $LOGFILE
1074                if test "x$RET_COMPILE" = x0 ; then
1075                    LIBS="$LIBS -lnetcdff -lnetcdf"
1076                    HAVE_NETCDF=t
1077                    echo "check_netcdf: successful" >> $LOGFILE
1078                fi
1079          fi          fi
1080      fi      fi
1081      rm -f genmake_tnc*      rm -f genmake_tnc*
1082        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1083    }
1084    
1085    check_lapack_libs()  {
1086        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1087        echo >> $LOGFILE
1088        echo "running: check_lapack_libs()" >> $LOGFILE
1089        cat <<EOF > genmake_tla.F
1090          program fgenla
1091          integer info
1092          integer ipiv( 2 )
1093          double precision ab( 4, 2 ), b( 2 )
1094          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1095          data b / 1., 1. /
1096          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1097          IF (info .NE. 0) write(*,*) 'Error:', info
1098          write(*,*) b
1099          end
1100    EOF
1101        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1102        cat genmake_tla.F >> genmake_tla.log
1103        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1104        RET_CPP=f
1105        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1106        echo "$COMM" >> genmake_tla.log
1107        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1108        if test "x$RET_CPP" = xf ; then
1109            echo "  WARNING: CPP failed to pre-process the lapack test." \
1110                >> genmake_tla.log
1111            echo "    Please check that \$INCLUDES is properly set." \
1112                >> genmake_tla.log
1113        fi
1114        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1115        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1116        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1117            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1118        RET_COMPILE=$?
1119        cat genmake_tla.log >> $LOGFILE
1120    
1121        # test program execution not always possible (see check_netcdf_libs)
1122        #
1123        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1124        #RETVAL=$?
1125        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1126    
1127        if test "x$RET_COMPILE" = x0 ; then
1128            HAVE_LAPACK=t
1129            echo "check_lapack: successful" >> $LOGFILE
1130        else
1131            # try again with "-llapack" added to the libs
1132            echo "==> try again with added '-llapack'" > genmake_tla.log
1133            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1134            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1135            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1136            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1137                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1138                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1139            RET_COMPILE=$?
1140            echo >> $LOGFILE
1141            cat genmake_tla.log >> $LOGFILE
1142            if test "x$RET_COMPILE" = x0 ; then
1143                LIBS="$LIBS -llapack"
1144                HAVE_LAPACK=t
1145                echo "check_lapack: successful" >> $LOGFILE
1146            else
1147            # try again with "-lf77blas -lcblas" added to the libs
1148                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1149                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1150                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1151                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1152                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1153                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1154                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1155                RET_COMPILE=$?
1156                echo >> $LOGFILE
1157                cat genmake_tla.log >> $LOGFILE
1158                if test "x$RET_COMPILE" = x0 ; then
1159                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1160                    HAVE_LAPACK=t
1161                    echo "check_lapack: successful" >> $LOGFILE
1162                else
1163                # try again with "-latlas" added to the libs
1164                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1165                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1166                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1167                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1168                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1169                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1170                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1171                    RET_COMPILE=$?
1172                    echo >> $LOGFILE
1173                    cat genmake_tla.log >> $LOGFILE
1174                    if test "x$RET_COMPILE" = x0 ; then
1175                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1176                        HAVE_LAPACK=t
1177                        echo "check_lapack: successful" >> $LOGFILE
1178                    fi
1179                fi
1180            fi
1181        fi
1182        rm -f genmake_tla*
1183        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1184  }  }
1185    
1186    check_HAVE_FLUSH()  {
1187        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1188            return
1189        fi
1190        echo >> $LOGFILE
1191        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1192        cat <<EOF > genmake_tflsh.$FS
1193          program fgenflsh
1194          integer iounit
1195          character*9 fname
1196          iounit = 26
1197          fname = 'tmp.tflsh'
1198          open(iounit,FILE=fname,STATUS='unknown')
1199          write(iounit,*) 'genmake_tflsh: hello'
1200          call flush(iounit)
1201          close(iounit)
1202          end
1203    EOF
1204        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1205        cat genmake_tflsh.$FS >> genmake_tflsh.log
1206        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1207    
1208        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1209        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1210        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1211            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1212        RET_COMPILE=$?
1213    
1214        if test "x$RET_COMPILE" = x0 ; then
1215            HAVE_FLUSH=t
1216            #cat genmake_tflsh.log >> $LOGFILE
1217            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1218        else
1219            HAVE_FLUSH=f
1220            cat genmake_tflsh.log >> $LOGFILE
1221        fi
1222        rm -f genmake_tflsh*
1223        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1224    }
1225    
1226  ###############################################################################  ###############################################################################
1227  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 777  PLATFORM= Line 1234  PLATFORM=
1234  LN=  LN=
1235  S64=  S64=
1236  KPP=  KPP=
1237  FC=  #FC=
1238  #CC=gcc  #CC=gcc
1239  CPP=  #CPP=
1240  LINK=  LINK=
1241  DEFINES=  DEFINES=
1242  PACKAGES=  PACKAGES=
1243  ENABLE=  ENABLE=
1244  DISABLE=  DISABLE=
1245  MAKEFILE=  # MAKEFILE=
1246  #MAKEDEPEND=  # MAKEDEPEND=
1247  PDEPEND=  PKG_DEPEND=
1248  DUMPSTATE=t  PKG_GROUPS=
1249  PDEFAULT=  DUMPSTATE=f
1250  OPTFILE=  OPTFILE=
1251  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1252  FFLAGS=  FFLAGS=
1253  FOPTIM=  FOPTIM=
1254    FEXTRAFLAGS=
1255    USE_EXTENDED_SRC=
1256    EXTENDED_SRC_FLAG=
1257    GET_FC_VERSION=
1258  CFLAGS=  CFLAGS=
1259  KFLAGS1=  KFLAGS1=
1260  KFLAGS2=  KFLAGS2=
# Line 804  NOOPTFILES= Line 1265  NOOPTFILES=
1265  NOOPTFLAGS=  NOOPTFLAGS=
1266  MPI=  MPI=
1267  MPIPATH=  MPIPATH=
1268    OMP=
1269    OMPFLAG=
1270    USE_R4=
1271    TS=
1272    PAPIS=
1273    PCLS=
1274    FOOLAD=
1275    PAPI=
1276    PCL=
1277    HPMT=
1278    GSL=
1279    DEVEL=
1280    HAVE_TEST_L=
1281    
1282    # set this to "t" to enable lapack test
1283    CHECK_FOR_LAPACK=f
1284    
1285  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1286  HAVE_SYSTEM=  HAVE_SYSTEM=
1287  HAVE_FDATE=  HAVE_FDATE=
1288  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1289  HAVE_CLOC=  HAVE_CLOC=
1290    # HAVE_SETRLSTK=
1291  HAVE_STAT=  HAVE_STAT=
1292  HAVE_NETCDF=  HAVE_NETCDF=
1293  HAVE_ETIME=  HAVE_ETIME=
1294    IGNORE_TIME=
1295    HAVE_LAPACK=
1296    HAVE_FLUSH=
1297    
1298  MODS=  MODS=
1299  TOOLSDIR=  TOOLSDIR=
# Line 820  SOURCEDIRS= Line 1301  SOURCEDIRS=
1301  INCLUDEDIRS=  INCLUDEDIRS=
1302  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1303    
1304    #- local config file
1305    gm_local="genmake_local"
1306    
1307  G2ARGS=  G2ARGS=
1308  BASH=  BASH=
1309  PWD=`pwd`  PWD=`pwd`
1310  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1311  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1312    EMBED_SRC=
1313  THISHOST=`hostname`  THISHOST=`hostname`
1314  THISCWD=`pwd`  THISCWD=`pwd`
1315  THISDATE=`date`  THISDATE=`date`
# Line 834  MACHINE=`uname -a` Line 1319  MACHINE=`uname -a`
1319  EXECUTABLE=  EXECUTABLE=
1320  EXEHOOK=  EXEHOOK=
1321  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1322  IEEE=  IEEE=
1323  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1324      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 843  FS= Line 1327  FS=
1327  FS90=  FS90=
1328    
1329  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1330    OPENAD=
1331  AD_OPTFILE=  AD_OPTFILE=
1332  TAF=  TAF=
1333  AD_TAF_FLAGS=  AD_TAF_FLAGS=
# Line 855  FTL_TAF_FLAGS= Line 1340  FTL_TAF_FLAGS=
1340  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1341  TAMC_EXTRA=  TAMC_EXTRA=
1342    
1343    DIVA=
1344    MPIINCLUDEDIR=
1345    MPI_HEADER_FILES=
1346    LOCAL_MPI_HEADERS=
1347    
1348  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1349  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1350  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1351    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1352    
1353  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1354  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1355  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1356  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1357  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1358  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1359    
1360  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1361  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1362  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1363  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1364    
1365  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1366  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1367    
1368  cat <<EOF  cat <<EOF
1369    
1370  GENMAKE :  GENMAKE :
1371    
1372  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1373  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1374    or for more detail see the Developer's HOWTO manual at:
1375    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1376    
1377  EOF  EOF
1378    
1379    LOGFILE="genmake.log"
1380    #- clean-up previous genmake logfiles:
1381    rm -f genmake_state genmake_*optfile $LOGFILE
1382    
1383  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1384    
1385  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1386  #parse_options  #parse_options
1387  ac_prev=  ac_prev=
1388  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 926  for ac_option in "$@" ; do Line 1395  for ac_option in "$@" ; do
1395          ac_prev=          ac_prev=
1396          continue          continue
1397      fi      fi
1398        
1399      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1400        
1401      case $ac_option in      case $ac_option in
1402            
1403          -help | --help | -h | --h)          -help | --help | -h | --h)
1404              usage ;;              usage ;;
1405            
1406          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1407              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1408          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1409              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1410          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1411              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1412            
1413            -oad | --oad)
1414                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1415          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1416              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1417          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1418              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1419            
1420          -pdepend | --pdepend)          -pdepend | --pdepend)
1421              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1422          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1423              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1424            
1425          -pdefault | --pdefault)          -pgroups | --pgroups)
1426              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1427          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1428              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1429            
1430          -make | --make | -m | --m)          -make | --make | -m | --m)
1431              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1432          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1433              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1434            
1435          -bash | --bash)          -bash | --bash)
1436              ac_prev=BASH ;;              ac_prev=BASH ;;
1437          -bash=* | --bash=*)          -bash=* | --bash=*)
1438              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1439            
1440          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1441              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1442          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1443              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1444            
1445          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1446              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1447          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1448              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1449            
1450          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1451              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1452              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1453              echo              echo
1454              usage              usage
1455              ;;              ;;
1456            
1457          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1458              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1459          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1460              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1461            
1462          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1463              ac_prev=MODS ;;              ac_prev=MODS ;;
1464          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1465              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1466            
1467          -disable | --disable)          -disable | --disable)
1468              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1469          -disable=* | --disable=*)          -disable=* | --disable=*)
1470              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1471            
1472          -enable | --enable)          -enable | --enable)
1473              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1474          -enable=* | --enable=*)          -enable=* | --enable=*)
1475              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1476            
1477          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1478              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1479          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1012  for ac_option in "$@" ; do Line 1483  for ac_option in "$@" ; do
1483  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1484  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1485  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1486            
1487          -cc | --cc)          -cc | --cc)
1488              ac_prev=CC ;;              ac_prev=CC ;;
1489          -cc=* | --cc=*)          -cc=* | --cc=*)
1490              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1491            
1492          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1493              ac_prev=FC ;;              ac_prev=FC ;;
1494          -fc=* | --fc=*)          -fc=* | --fc=*)
1495              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1496            
1497          -fs | --fs)          -fs | --fs)
1498              ac_prev=FS ;;              ac_prev=FS ;;
1499          -fs=* | --fs=*)          -fs=* | --fs=*)
1500              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1501            
1502          -fs90 | --fs90)          -fs90 | --fs90)
1503              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1504          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1505              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1506            
1507            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1508                USE_R4=true ;;
1509    
1510          -ieee | --ieee)          -ieee | --ieee)
1511              IEEE=true ;;              IEEE=true ;;
1512          -noieee | --noieee)          -noieee | --noieee)
1513              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1514            -devel | --devel)
1515                IEEE=true ; DEVEL=true ;;
1516            -gsl | --gsl)
1517                GSL=true ;;
1518    
1519            -ts | --ts)
1520                TS=true ;;
1521            -papis | --papis)
1522                PAPIS=true ;;
1523            -pcls | --pcls)
1524                PCLS=true ;;
1525            -foolad | --foolad)
1526                FOOLAD=true ;;
1527            -papi | --papi)
1528                PAPI=true ;;
1529            -pcl | --pcl)
1530                PCL=true ;;
1531            -hpmt | --hpmt)
1532                HPMT=true ;;
1533    
1534          -mpi | --mpi)          -mpi | --mpi)
1535              MPI=true ;;              MPI=true ;;
1536          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1537              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1538              MPI=true ;;              MPI=true ;;
1539            
1540  #       -jam | --jam)          -omp | --omp)
1541  #           JAM=1 ;;              OMP=true ;;
1542  #       -nojam | --nojam)          -omp=* | --omp=*)
1543  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1544                        OMP=true ;;
1545    
1546          -ds | --ds)          -ds | --ds)
1547              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1548            
1549            -extra_flag | --extra_flag)
1550                ac_prev=FEXTRAFLAGS ;;
1551            -extra_flag=* | --extra_flag=*)
1552                FEXTRAFLAGS=$ac_optarg ;;
1553    
1554          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1555              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1556          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1062  for ac_option in "$@" ; do Line 1561  for ac_option in "$@" ; do
1561          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1562              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1563    
1564            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1565                IGNORE_TIME="-DIGNORE_TIME" ;;
1566    
1567            -es | --es | -embed-source | --embed-source)
1568                EMBED_SRC=t ;;
1569    
1570          -*)          -*)
1571              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575          *)          *)
1576              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1577              usage              usage
1578              ;;              ;;
1579            
1580      esac      esac
1581        
1582  done  done
1583    
1584    #TMP=./genmk_$$
1585    #- try to put temporary files in system-local /tmp dir
1586    TMP=/tmp/genmk_$$
1587    touch $TMP ; retVal=$?
1588    if [ $retVal -eq 0 ] ; then
1589      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1590    else
1591      TMP=./genmk_$$
1592    fi
1593    rm -f $TMP
1594    #echo "  temp files: $TMP.*"
1595    
1596    printf "  getting local config information:  "
1597    if test -f $gm_local ; then
1598        echo "using $gm_local"
1599        . $gm_local
1600    else
1601        echo "none found"
1602    fi
1603    
1604  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1605      echo      echo
1606      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1607      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1608      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1609      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1610        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1611        echo "WARNING: ignore \"./.genmakerc\" and continue."
1612      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1613  fi  fi
1614    
1615  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1616  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1617      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1618      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1619          ROOTDIR=".."          ROOTDIR=".."
1620      else      else
1621          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1622              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1623                  ROOTDIR=$d                  ROOTDIR=$d
1624                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1625                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1626                  break                  break
1627              fi              fi
1628          done          done
# Line 1116  if test ! -d ${ROOTDIR} ; then Line 1640  if test ! -d ${ROOTDIR} ; then
1640  fi  fi
1641    
1642  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1643  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1644      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1645        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1646    #-  remove ./BUILD_INFO.h file if older than version_file
1647        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1648            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1649            rm -f ./BUILD_INFO.h
1650        fi
1651  fi  fi
1652    
1653  echo "  getting OPTFILE information:  "  if test "x$MAKEFILE" = x ; then
1654        MAKEFILE="Makefile"
1655    fi
1656    
1657    echo "  getting OPTFILE information:"
1658  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1659      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1660          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1661          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1662          find_possible_configs          find_possible_optfile
1663      else      else
1664          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1665      fi      fi
# Line 1140  if test "x$OPTFILE" != xNONE ; then Line 1674  if test "x$OPTFILE" != xNONE ; then
1674              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1675              exit 1              exit 1
1676          fi          fi
1677          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1678              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1679          fi          fi
1680      else      else
# Line 1149  if test "x$OPTFILE" != xNONE ; then Line 1683  if test "x$OPTFILE" != xNONE ; then
1683      fi      fi
1684  fi  fi
1685    
1686  #  Check for broken systems that cannot correctly distinguish *.F and *.f files  echo "  getting AD_OPTFILE information:"
 # check_for_broken_Ff  
   
 echo "  getting AD_OPTFILE information:  "  
1687  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1688      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1689            AD_OPTFILE=$MITGCM_AD_OF
1690        elif test "x$OPENAD" = x ; then
1691          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1692      else      else
1693          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1694      fi      fi
1695  fi  fi
1696  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1170  if test "x${AD_OPTFILE}" != xNONE ; then Line 1703  if test "x${AD_OPTFILE}" != xNONE ; then
1703              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1704              exit 1              exit 1
1705          fi          fi
1706          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1707              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1708          fi          fi
1709      else      else
# Line 1179  if test "x${AD_OPTFILE}" != xNONE ; then Line 1712  if test "x${AD_OPTFILE}" != xNONE ; then
1712      fi      fi
1713  fi  fi
1714    
1715    #====================================================================
1716    #  Set default values if not set by the optfile
1717    #
1718  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1719  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1720  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1195  Error: no Fortran compiler: please speci Line 1731  Error: no Fortran compiler: please speci
1731  EOF  EOF
1732      exit 1      exit 1
1733  fi  fi
1734    if test "x$GET_FC_VERSION" != x ; then
1735      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1736      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1737      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1738      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1739      if test -s genmake_fc_vers1 ; then
1740        cat genmake_fc_vers1 >> $LOGFILE
1741      else
1742        cat genmake_fc_vers2 >> $LOGFILE
1743      fi
1744      echo "<-- compiler version ----" >> $LOGFILE
1745      rm -f genmake_fc_vers1 genmake_fc_vers2
1746    fi
1747    
1748  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1749      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1750  fi  fi
1751    
1752  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1753      LINK=$FC      LINK=$FC
1754  fi  fi
# Line 1212  if test "x$MAKE" = x ; then Line 1756  if test "x$MAKE" = x ; then
1756      MAKE="make"      MAKE="make"
1757  fi  fi
1758  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1759      CPP=cpp      CPP="cpp -traditional -P"
1760  fi  fi
1761  #EH3 === UGLY ===  #EH3 === UGLY ===
1762  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1239  EOF Line 1783  EOF
1783  else  else
1784      rm -f test_cpp      rm -f test_cpp
1785  fi  fi
1786    
1787  look_for_makedepend  look_for_makedepend
1788    
1789    #  Check that soft-link command is set and usable
1790  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1791      LN="ln -s"      LN="ln -s"
1792  fi  fi
# Line 1249  RETVAL=$? Line 1796  RETVAL=$?
1796  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1797      cat <<EOF 1>&2      cat <<EOF 1>&2
1798    
1799  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1800    command in the optfile.    command in the optfile.
1801    
1802  EOF  EOF
1803      exit 1      exit 1
1804  fi  fi
1805    test -L genmake_tlink > /dev/null 2>&1
1806    RETVAL=$?
1807    if test "x$RETVAL" = x0 ; then
1808        HAVE_TEST_L=t
1809    fi
1810  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1811    
1812  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1262  check_for_broken_Ff Line 1814  check_for_broken_Ff
1814    
1815  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1816        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1817        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1818    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1819    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1820    fi
1821    if test ! "x$OMP" = x ; then
1822          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1823          FFLAGS="$FFLAGS $OMPFLAG"
1824          F90FLAGS="$F90FLAGS $OMPFLAG"
1825          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1826    fi
1827    
1828    if test ! "x$USE_R4" = x ; then
1829          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1830          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1831    fi
1832    
1833    if test ! "x$TS" = x ; then
1834          echo "  Turning on timing per timestep"
1835          if test ! "x$FOOLAD" = x ; then
1836                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1837          else
1838                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1839          fi
1840          PACKAGES="$PACKAGES showflops"
1841    fi
1842    if test ! "x$PAPIS" = x ; then
1843          echo "  Turning on PAPI flop summary per timestep"
1844          echo "  Please make sure PAPIINC, PAPILIB are defined"
1845          if test ! "x$FOOLAD" = x ; then
1846                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1847          else
1848                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1849          fi
1850          INCLUDES="$INCLUDES $PAPIINC"
1851          LIBS="$LIBS $PAPILIB"
1852          PACKAGES="$PACKAGES showflops"
1853    fi
1854    if test ! "x$PCLS" = x ; then
1855          echo "  Turning on PCL counter summary per timestep"
1856          echo "  Please make sure PCLINC, PCLLIB are defined"
1857          if test ! "x$FOOLAD" = x ; then
1858                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1859          else
1860                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1861          fi
1862          INCLUDES="$INCLUDES $PCLINC"
1863          LIBS="$LIBS $PCLLIB"
1864          PACKAGES="$PACKAGES showflops"
1865    fi
1866    if test ! "x$PAPI" = x ; then
1867          if test ! "x$PAPIS" = x ; then
1868              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1869              echo "  Sticking with PAPI flop summary per timestep!"
1870          else
1871              echo "  Turning on performance analysis with PAPI"
1872              echo "  Please make sure PAPIINC, PAPILIB are defined"
1873              DEFINES="$DEFINES -DUSE_PAPI"
1874              INCLUDES="$INCLUDES $PAPIINC"
1875              LIBS="$LIBS $PAPILIB"
1876          fi
1877    fi
1878    if test ! "x$PCL" = x ; then
1879          if test ! "x$PCLS" = x ; then
1880              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1881              echo "  Sticking with PCL flop summary per timestep!"
1882          else
1883              echo "  Turning on performance analysis with PCL"
1884              echo "  Please make sure PCLINC, PCLLIB are defined"
1885              DEFINES="$DEFINES -DUSE_PCL"
1886              INCLUDES="$INCLUDES $PCLINC"
1887              LIBS="$LIBS $PCLLIB"
1888          fi
1889    fi
1890    if test ! "x$HPMT" = x ; then
1891          if test ! "x$PAPI" = x ; then
1892              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1893              echo "  Sticking with PAPI!"
1894          else
1895            if test ! "x$PCL" = x ; then
1896              echo "  PCL and the HPM Toolkit cannot co-exist!"
1897              echo "  Sticking with PCL!"
1898            else
1899              echo "  Turning on performance analysis with the HPM Toolkit"
1900              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1901              DEFINES="$DEFINES -DUSE_LIBHPM"
1902              INCLUDES="$INCLUDES $HPMTINC"
1903              LIBS="$LIBS $HPMTLIB"
1904            fi
1905          fi
1906    fi
1907    if test ! "x$GSL" = x ; then
1908          echo "  Turning on use of GSL to control floating point calculations"
1909          echo "  Please make sure GSLINC, GSLLIB are defined"
1910          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1911          INCLUDES="$INCLUDES $GSLINC"
1912          LIBS="$LIBS $GSLLIB"
1913    fi
1914    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1915    if test ! "x$USE_EXTENDED_SRC" = x ; then
1916          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1917          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1918  fi  fi
1919    
1920  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1921  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1922  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1923        program hello        program hello
1924        call system('echo hi')        call system('echo hi')
1925        end        end
1926  EOF  EOF
1927  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1928  RETVAL=$?  RETVAL=$?
1929  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1930      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1285  fi Line 1937  fi
1937  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1938    
1939  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1940  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1941        program hello        program hello
1942        CHARACTER(128) string        CHARACTER*(128) string
1943        string = ' '        string = ' '
1944        call fdate( string )        call fdate( string )
1945        print *, string        print *, string
1946        end        end
1947  EOF  EOF
1948  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1949  RETVAL=$?  RETVAL=$?
1950  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1951      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1306  fi Line 1958  fi
1958  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1959    
1960  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1961  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1962        program hello        program hello
1963        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1964        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1315  cat > genmake_tcomp.f <<EOF Line 1967  cat > genmake_tcomp.f <<EOF
1967        print *, tarray        print *, tarray
1968        end        end
1969  EOF  EOF
1970  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1971  RETVAL=$?  RETVAL=$?
1972  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1973      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1330  rm -f genmake_tcomp* Line 1982  rm -f genmake_tcomp*
1982  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1983  check_HAVE_CLOC  check_HAVE_CLOC
1984  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1985        DEFINES="$DEFINES -DHAVE_CLOC"
1986        echo "yes"
1987    else
1988        echo "no"
1989        if test "x$EMBED_SRC" = xt ; then
1990            echo "    WARNING: you requested file embedding but it has"
1991            echo "      been disabled since C code cannot be called"
1992            EMBED_SRC=
1993        fi
1994    fi
1995    rm -f genmake_t*
1996    
1997    printf "  Can we unlimit the stack size using $FC...  "
1998    check_HAVE_SETRLSTK
1999    if test "x$HAVE_SETRLSTK" = xt ; then
2000        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2001        echo "yes"
2002    else
2003        echo "no"
2004    fi
2005    rm -f genmake_t*
2006    
2007    printf "  Can we register a signal handler using $FC...  "
2008    check_HAVE_SIGREG
2009    if test "x$HAVE_SIGREG" = xt ; then
2010        DEFINES="$DEFINES -DHAVE_SIGREG"
2011      echo "yes"      echo "yes"
2012  else  else
2013      echo "no"      echo "no"
# Line 1339  rm -f genmake_t* Line 2017  rm -f genmake_t*
2017  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2018  check_HAVE_STAT  check_HAVE_STAT
2019  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2020        DEFINES="$DEFINES -DHAVE_STAT"
2021      echo "yes"      echo "yes"
2022  else  else
2023      echo "no"      echo "no"
# Line 1348  rm -f genmake_t* Line 2027  rm -f genmake_t*
2027  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2028  check_netcdf_libs  check_netcdf_libs
2029  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2030        DEFINES="$DEFINES -DHAVE_NETCDF"
2031        echo "yes"
2032    else
2033        echo "no"
2034    fi
2035    
2036    printf "  Can we create LAPACK-enabled binaries...  "
2037    check_lapack_libs
2038    if test "x$HAVE_LAPACK" != x ; then
2039        DEFINES="$DEFINES -DHAVE_LAPACK"
2040        echo "yes"
2041    else
2042        echo "no"
2043    fi
2044    
2045    printf "  Can we call FLUSH intrinsic subroutine...  "
2046    check_HAVE_FLUSH
2047    if test "x$HAVE_FLUSH" = xt ; then
2048        DEFINES="$DEFINES -DHAVE_FLUSH"
2049      echo "yes"      echo "yes"
2050  else  else
2051      echo "no"      echo "no"
2052  fi  fi
2053    
2054    DEFINES="$DEFINES $IGNORE_TIME"
2055    if test "x$EMBED_SRC" = xt ; then
2056        build_embed_encode
2057    fi
2058    if test "x$EMBED_SRC" = xt ; then
2059        ENABLE="$ENABLE embed_files"
2060    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2061    fi
2062    
2063  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2064  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2065  for d in $MODS ; do  for d in $MODS ; do
2066      if test ! -d $d ; then      if test ! -d $d ; then
2067          echo          echo
2068          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2069          exit 1          exit 1
2070      else      else
2071          printf " $d"          printf "$d "
2072          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2073          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2074      fi      fi
2075  done  done
2076  echo  echo
2077    
2078  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2079      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2080  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2081    
2082  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2083      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2084      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2085          EXEDIR=../exe          EXEDIR=../exe
2086      else      else
# Line 1414  ERROR: neither of the two default script Line 2117  ERROR: neither of the two default script
2117      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2118      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2119    
2120    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2121    working version of this script.    working version of this script.
2122    
2123  EOF  EOF
# Line 1426  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2129  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2129    
2130  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2131    
2132    #  Set Standard Code Directories:
2133    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2134        STANDARDDIRS="eesupp model"
2135    fi
2136    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2137    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2138    ckM=$?
2139    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2140    ckE=$?
2141    if test $ckM = 0 -a $ckE = 1 ; then
2142        STANDARDDIRS="$STANDARDDIRS eesupp"
2143    fi
2144    
2145  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2146  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2147  #  they appear as regular source code  #  they appear as regular source code
2148  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2149      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2150      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2151        ) > make_eesupp.errors 2>&1
2152      RETVAL=$?      RETVAL=$?
2153      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2154          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1442  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2159  if test -r $ROOTDIR"/eesupp/src/Makefile
2159      fi      fi
2160  fi  fi
2161    
2162  #same for exch2  #same for pkg/exch2 and pkg/regrid
2163  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2164      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2165      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2166      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2167      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2168          rm -f make_exch2.errors          RETVAL=$?
2169      else          if test "x${RETVAL}" = x0 ; then
2170          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2171          cat make_exch2.errors 1>&2          else
2172          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2173                cat make_${pdir}.errors 1>&2
2174                exit 1
2175            fi
2176      fi      fi
2177  fi  done
2178    
2179  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2180  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2181      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2182      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2183          PDEPEND=$tmp  fi
2184      else  if  test "x${PKG_DEPEND}" = x ; then
2185          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2186          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2187  else  else
2188      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2189          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2190          exit 1          exit 1
2191      fi      fi
2192        echo "  getting package dependency info from  $PKG_DEPEND"
2193    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2194        get_pdepend_list $PKG_DEPEND
2195  fi  fi
2196  echo "  getting package dependency info from  $PDEPEND"  
2197  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2198  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2199  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2200      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2201      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2202  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2203  if test ! "x${RETVAL}" = x0 ; then  fi
2204      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2205      exit 1          echo "Warning:  No package groups information was specified."
2206            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2207    else
2208        if test ! -r ${PKG_GROUPS} ; then
2209            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2210            exit 1
2211        fi
2212        echo "  getting package groups info from      $PKG_GROUPS"
2213  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2214    
2215  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2216  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2217  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2218  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2219      for i in "." $MODS ; do      for i in "." $MODS ; do
2220          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2221                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2222                  break                  break
2223          fi          fi
2224      done      done
2225  fi  fi
2226  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2227      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2228  fi      if test "x${PKG_GROUPS}" = x ; then
2229  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2230      echo "    default packages file disabled"          exit 1
2231        fi
2232  else  else
2233      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2234          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2235            exit 1
2236      else      else
2237          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2238          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2239          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2240          RETVAL=$?          RETVAL=$?
2241          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2242              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2243              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2244              exit 1              exit 1
2245          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2246      fi      fi
2247  fi  fi
2248    for i in $pkg_list ; do
2249        PACKAGES="$PACKAGES $i"
2250    done
2251    echo     "    before group expansion packages are:$PACKAGES"
2252    if test "x${PKG_GROUPS}" != x ; then
2253        RET=1
2254        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2255        echo "    after group expansion packages are: $PACKAGES"
2256    fi
2257    
2258  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2259    echo "" > $TMP.pack
2260  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2261      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2262  done  done
2263  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2264      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2265      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2266  done  done
# Line 1547  for p in $PACKAGES ; do Line 2278  for p in $PACKAGES ; do
2278  done  done
2279  PACKAGES="$pack"  PACKAGES="$pack"
2280  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2281  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2282  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2283  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2284  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2285      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2286      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2287          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2288          exit 1          exit 1
2289      fi      fi
2290      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2291  done  done
2292  PACKAGES=  PACKAGES=
2293  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2294      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2295  done  done
2296  rm -f ./.tmp_pack  rm -f $TMP.pack
2297  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2298    
2299  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2300  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2301  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2302  RETVAL=$?  mnc_in=$?
2303  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2304      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2305          cat <<EOF          cat <<EOF
   
2306  *********************************************************************  *********************************************************************
2307  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2308    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2309    
2310    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2311    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2312         NetCDF library to link against.         NetCDF library to link against.
2313    
2314    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2315  *********************************************************************  *********************************************************************
   
2316  EOF  EOF
2317          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2318          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2319      else      else
2320          ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2321          RETVAL=$?          DISABLE="$DISABLE mnc"
2322          if test "x${RETVAL}" = x0 ; then      fi
2323              rm -f make_mnc.errors  else
2324          else      # we have NetCDF, we try to build MNC template files
2325              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2326              cat make_mnc.errors 1>&2      RETVAL=$?
2327        if test "x${RETVAL}" = x0 ; then
2328            rm -f make_mnc.errors
2329        else
2330            echo "Error: problem encountered while building source files in pkg/mnc:"
2331            cat make_mnc.errors 1>&2
2332            if test "x$mnc_in" = x0 ; then
2333              exit 1              exit 1
2334            else
2335                DISABLE="$DISABLE mnc"
2336          fi          fi
2337      fi      fi
2338  fi  fi
2339    
2340  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2341  ck=  #  then delete profiles from the list of available packages.
2342  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2343        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2344        RETVAL=$?
2345        if test "x$RETVAL" = x0 ; then
2346            cat <<EOF
2347    *********************************************************************
2348    WARNING: the "profiles" package was enabled but tests failed to
2349      compile NetCDF applications.  Please check that:
2350    
2351      1) NetCDF is correctly installed for this compiler and
2352      2) the LIBS variable (within the "optfile") specifies the correct
2353           NetCDF library to link against.
2354    
2355      Due to this failure, the "profiles" package is now DISABLED.
2356    *********************************************************************
2357    EOF
2358            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2359            DISABLE="$DISABLE profiles"
2360        else
2361        #  this prevent to add profiles (due to pdepend rules) if not available
2362            DISABLE="$DISABLE profiles"
2363        fi
2364    fi
2365    
2366    #  Make sure the openad package is enabled if using OpenAD
2367    if test "x$OPENAD" != x ; then
2368        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2369        RETVAL=$?
2370        if test "x$RETVAL" != x0 ; then
2371            cat <<EOF
2372    
2373    *********************************************************************
2374    ERROR: when generating an adjoint with OpenAD, the openad package
2375      must be enabled.  Please add it to packages.conf.
2376    *********************************************************************
2377    
2378    EOF
2379            exit 1
2380        fi
2381    fi
2382    
2383    if  test "x${PKG_DEPEND}" != x ; then
2384      echo "  applying package dependency rules"
2385      ck=
2386      while test "x$ck" != xtt ; do
2387      i=0      i=0
2388      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2389      rtot=$nname      rtot=$nname
2390      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2391    
2392          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2393          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1618  while test "x$ck" != xtt ; do Line 2399  while test "x$ck" != xtt ; do
2399                  pin="t"                  pin="t"
2400              fi              fi
2401          done          done
2402            #  or in the current $STANDARDDIRS list?
2403            for p in $STANDARDDIRS ; do
2404                if test "x$p" = "x$pname" ; then pin="t" ; fi
2405            done
2406    
2407          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2408          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1640  while test "x$ck" != xtt ; do Line 2425  while test "x$ck" != xtt ; do
2425    
2426          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2427          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2428                #echo "   " $pname ": need to add :" $dname
2429              in_dis="f"              in_dis="f"
2430              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2431                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1660  while test "x$ck" != xtt ; do Line 2446  while test "x$ck" != xtt ; do
2446          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2447          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2448              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2449              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2450              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2451              exit 1              exit 1
2452          fi          fi
2453          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2454          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2455      done      done
2456      ck=$ck"t"      ck=$ck"t"
2457  done    done
2458  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2459    fi
2460  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2461      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2462      if test -d $adr ; then      if test -d $adr ; then
# Line 1686  done Line 2473  done
2473    
2474  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2475  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2476  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2477  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2478  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2479  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2480  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1703  for n in $names ; do Line 2490  for n in $names ; do
2490              fi              fi
2491          done          done
2492          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2493              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2494              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2495          fi          fi
2496      fi      fi
2497  done  done
2498  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2499  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2500      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2501      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2502  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2503    
2504  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2505      case $i in      case $i in
2506          aim_v23)          aim_v23)
2507              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2508              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2509              ;;              ;;
2510      esac      esac
# Line 1725  for i in $PACKAGES ; do Line 2512  for i in $PACKAGES ; do
2512    
2513  done  done
2514    
2515  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2516  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2517  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2518      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2519          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1762  for i in $spaths ; do Line 2546  for i in $spaths ; do
2546      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2547          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2548          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2549          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2550          for n in $names ; do          for n in $names ; do
2551              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2552          done          done
2553      fi      fi
2554      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2555      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2556          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2557          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2558  #**** not yet enabled ****  #**** not yet enabled ****
2559  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2560  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1784  fi Line 2568  fi
2568    
2569  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2570  #  compiler.  #  compiler.
2571  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2572      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2573  fi  fi
2574  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2575    touch $TMP.adSrcFiles
2576  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2577      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2578      for j in $list_files ; do      for j in $list_files ; do
2579          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2580      done      done
2581  done  done
2582    if test ! "x"$FS = "x.f" ; then
2583        cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2584        mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2585    fi
2586    
2587  echo  echo
2588  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1805  for i in $INCLUDEDIRS ; do Line 2593  for i in $INCLUDEDIRS ; do
2593      fi      fi
2594  done  done
2595    
2596    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2597        if test ! "x$MPIINCLUDEDIR" = x ; then
2598            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2599            #   checking for additional included headers (in case of chain of included
2600            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2601            mpi_headers_do_local_copy
2602        fi
2603    fi
2604    
2605  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2606  rm -rf .links.tmp  rm -rf $TMP.links
2607  mkdir .links.tmp  mkdir $TMP.links
2608  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2609  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2610  printf 'SRCFILES = '    > srclist.inc      echo
2611  printf 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2612  printf 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2613  printf 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2614  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2615        echo "   sane such as:"
2616        echo
2617        echo "      umask 0002"
2618        echo
2619        echo "   and please verify that you have the proper permissions for"
2620        echo "   creating sub-directories and then reading files created"
2621        echo "   within them."
2622        echo
2623        exit 1
2624    fi
2625    rm -f $TMP.links/foo
2626    
2627    if test "x$OPENAD" != x ; then
2628        OAD_DONT_COMPILE="/dev/null"
2629        OAD_DONT_TRANSFORM="/dev/null"
2630        OAD_KEEP_ORIGINAL="/dev/null"
2631        OAD_CB2M_FILES="/dev/null"
2632        OADTOOLS="$TOOLSDIR/OAD_support"
2633        echo "  looking for dontCompile file:  "
2634        for i in "." $MODS $OADTOOLS ; do
2635            if test -r $i"/dontCompile" ; then
2636                OAD_DONT_COMPILE=$i"/dontCompile"
2637                echo "     found $OAD_DONT_COMPILE"
2638                break
2639            fi
2640        done
2641        echo "  looking for dontTransform file:  "
2642        for i in "." $MODS $OADTOOLS ; do
2643            if test -r $i"/dontTransform" ; then
2644                OAD_DONT_TRANSFORM=$i"/dontTransform"
2645                echo "     found $OAD_DONT_TRANSFORM"
2646                break
2647            fi
2648        done
2649        echo "  looking for keepOriginal file:  "
2650        for i in "." $MODS $OADTOOLS ; do
2651            if test -r $i"/keepOriginal" ; then
2652                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2653                echo "     found $OAD_KEEP_ORIGINAL"
2654                break
2655            fi
2656        done
2657        echo "  looking for cb2mFiles:  "
2658        for i in "." $MODS $OADTOOLS ; do
2659            if test -r $i"/cb2mFiles" ; then
2660                OAD_CB2M_FILES=$i"/cb2mFiles"
2661                echo "     found $OAD_CB2M_FILES"
2662                break
2663            fi
2664        done
2665        echo "   OpenAD exceptions:  "
2666    fi
2667    
2668    echo "# This section creates symbolic links" > $TMP.srclinks
2669    echo "" >> $TMP.srclinks
2670    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2671    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2672    printf 'C_SRC_FILES = '   > $TMP.csrclist
2673    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2674    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2675    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2676  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2677  for d in $alldirs ; do  for d in $alldirs ; do
2678      deplist=      deplist=
2679      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2680      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2681        if test "x$OPENAD" != x ; then
2682            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2683        fi
2684      for sf in $sfiles ; do      for sf in $sfiles ; do
2685          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2686              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2687                  case $d/$sf in                  ignore_f=f
2688                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2689                      ./$PACKAGES_DOT_H)
2690                            ignore_f=t
2691                          ;;                          ;;
2692                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2693                            ignore_f=t
2694                          ;;                          ;;
2695                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2696                            ignore_f=t
2697                          ;;                          ;;
2698                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2699                            ignore_f=t
2700                          ;;                          ;;
2701                    *)                    ./EMBEDDED_FILES.h)
2702                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2703                          ;;                          ;;
2704                  esac                    *)
2705                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2706                  case $extn in                          #  ignore all soft-links
2707                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2708                          echo    " \\"  >> srclist.inc                              ignore_f=t
2709                          printf " $sf" >> srclist.inc                          else
2710                                touch $TMP.links/$sf
2711                                deplist="$deplist $sf"
2712                            fi
2713                            ;;
2714                    esac
2715                    if test "x$ignore_f" = xf ; then
2716                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2717                        case $extn in
2718                          F)
2719                            echo    " \\"  >> $TMP.F77srclist
2720                            printf " $sf" >> $TMP.F77srclist
2721                            if test "x$OPENAD" = x ; then
2722                                basename=${sf%%.F}
2723                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2724                                if test -z "$isAD" ; then
2725                                    echo    " \\"  >> $TMP.nonADF77srclist
2726                                    printf " $sf" >> $TMP.nonADF77srclist
2727                                fi
2728                            else #- OpenAD case:
2729                                basename=${sf%%.F}
2730                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2731                                if test -z "$isAD" ; then
2732                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2733                                    if test -z "$toBeIgnored" ; then
2734                                        echo    " \\"  >> $TMP.nonADF77srclist
2735                                        printf " $sf" >> $TMP.nonADF77srclist
2736                                    else
2737                                        echo "    not to be compiled   :  $sf"
2738                                    fi
2739                                else # file is initially listed as an AD file we want to exclude it
2740                                     # or we want to retain the untransformed version
2741                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2742                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2743                                    if test -n "$notToBeTransformed"; then
2744                                        echo "    not to be transformed:  $sf"
2745                                    fi
2746                                    if test -n "$untransformedVersionToBeKept" ; then
2747                                        echo "    original to be kept  :  $sf"
2748                                    fi
2749                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2750                                        echo    " \\"  >> $TMP.nonADF77srclist
2751                                        printf " $sf" >> $TMP.nonADF77srclist
2752                                    fi
2753                                fi
2754                            fi
2755                          ;;                          ;;
2756                      F90)                      F90)
2757                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2758                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2759                          ;;                          ;;
2760                      c)                      c)
2761                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2762                          printf " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2763                          ;;                          ;;
2764                      h)                      h)
2765                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2766                          printf " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2767                          ;;                          ;;
2768                      flow)                      flow)
2769                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2770                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2771                          ;;                          ;;
2772                  esac                     esac
2773                    fi
2774              fi              fi
2775          fi          fi
2776      done      done
2777      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2778          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2779          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2780          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2781          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2782      fi  # We need to make sure that the link isn't already there.
2783    # This may happen when make thinks that a header file has to be "remade"
2784    # because a module it depends on has changed.  In this case we do nothing.
2785            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2786          fi
2787        fi
2788    done
2789    rm -rf $TMP.links
2790    echo "" >> $TMP.F77srclist
2791    echo "" >> $TMP.nonADF77srclist
2792    echo "" >> $TMP.csrclist
2793    echo "" >> $TMP.F90srclist
2794    echo "" >> $TMP.hsrclist
2795    echo "" >> $TMP.ad_flow_files
2796    
2797    CMDLINE=$0
2798    for xx in "$@" ; do nw=`echo $xx | wc -w`
2799        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2800                            else CMDLINE="$CMDLINE '$xx'" ; fi
2801  done  done
 rm -rf .links.tmp  
 echo "" >> srclist.inc  
 echo "" >> csrclist.inc  
 echo "" >> f90srclist.inc  
 echo "" >> hlist.inc  
 echo "" >> ad_flow_files.inc  
2802    
2803  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2804      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2805  fi  fi
2806  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2807  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1886  echo "#    $MACHINE" >> $MAKEFILE Line 2809  echo "#    $MACHINE" >> $MAKEFILE
2809  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2810  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2811  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2812  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2813  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2814  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2815    
# Line 1897  EXE_SVD=$EXECUTABLE"_svd" Line 2820  EXE_SVD=$EXECUTABLE"_svd"
2820  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2821  #  #
2822  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2823  #  #
2824  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2825  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2826  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1908  cat >>$MAKEFILE <<EOF Line 2831  cat >>$MAKEFILE <<EOF
2831  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2832  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2833  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2834  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2835  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2836  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1917  cat >>$MAKEFILE <<EOF Line 2838  cat >>$MAKEFILE <<EOF
2838  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2839    
2840  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2841  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2842  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2843  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2844  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2845  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2846  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2847    OADTOOLS    = ${OADTOOLS}
2848    
2849  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2850  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1935  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2857  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2857    
2858  # These files are created by Makefile  # These files are created by Makefile
2859  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2860  EOF  EOF
2861    
2862  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2863        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2864    else
2865        echo "EMBEDDED_FILES = " >>$MAKEFILE
2866    fi
2867    
2868    # extract default cpp search path so we can pass it to makedepend
2869    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2870    
2871  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2872  # Unix ln (link)  # Unix ln (link)
2873  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2874  # Dependency generator  # Dependency generator
2875  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2876  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1962  LINK = ${LINK} ${LDADD} Line 2888  LINK = ${LINK} ${LDADD}
2888  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2889  # Includes for CPP  # Includes for CPP
2890  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2891    # default CPP includes for makedepend
2892    CPPINCLUDES = ${CPPINCLUDES}
2893  # Flags for KPP  # Flags for KPP
2894  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2895  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2896  # Optim./debug for FC  # Optim./debug for FC
2897  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2898  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2899  # Optim./debug for FC  # Optim./debug for FC
2900  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2901  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2902    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2903  # Flags for CC  # Flags for CC
2904  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2905  # Files that should not be optimized  # Files that should not be optimized
# Line 1978  NOOPTFILES = ${NOOPTFILES} Line 2907  NOOPTFILES = ${NOOPTFILES}
2907  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2908  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2909  LIBS = ${LIBS}  LIBS = ${LIBS}
2910  # Name of the Mekfile  # Name of the makefile
2911  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2912    # Name of the make program
2913    MAKE = ${MAKE}
2914    
2915  EOF  EOF
2916    
2917  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2918  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2919  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2920  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2921  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2922    cat $TMP.ad_flow_files   >> $MAKEFILE
2923    
2924    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2925    
2926  echo >> $MAKEFILE  echo >> $MAKEFILE
2927  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2928  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2929  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2930    # hence the $FS and $FS90 here.
2931    # for fixed format f90 files we use ff90 or FF90 resp
2932    # but these are not expected to be the original source files
2933    
2934    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2935    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2936    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2937    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2938  echo >> $MAKEFILE  echo >> $MAKEFILE
2939  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2940  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2941    
2942  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2943    
2944  all: \$(EXECUTABLE)  all: fwd_exe_target
2945  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2946            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2947            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2948            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2949            @-rm -f ad_config.template
2950            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2951    
2952    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2953          @echo Creating \$@ ...          @echo Creating \$@ ...
2954          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2955    
2956  depend:  depend:
2957          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2958          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2959          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2960          -rm -f makedepend.out          -rm -f makedepend.out
2961    
2962  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2963    
2964    libmitgcmuv.a: \$(OBJFILES)
2965            ar rcv libmitgcmuv.a \$(OBJFILES)
2966            ar d   libmitgcmuv.a main.o
2967    
2968  small_f: \$(F77FILES) \$(F90FILES)  obj: \$(OBJFILES)
2969    
2970  output.txt: \$(EXECUTABLE)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2971    
2972    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2973    
2974    # remove most of the files that "make" generates
2975  clean:  clean:
2976          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2977            -rm -rf *.o
2978            -rm -rf *.$FS *.flowdir
2979            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2980    
2981    # remove most of the files that "make" and "make depend" generate
2982  Clean:  Clean:
2983          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2984          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2985          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2986          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2987    
2988    # remove also the executable, files that "genmake2" generates (except Makefile)
2989    #         and output from a run (plus log files from testreport)
2990  CLEAN:  CLEAN:
2991          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2992            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2993            -rm -f $LOGFILE genmake_state genmake_*optfile
2994            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2995            -rm -rf mpi_headers mnc_test_*
2996          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2997          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2998          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2999          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3000            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3001            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3002            -rm -f oad_cp.[0-9][0-9][0-9].?????
3003    
 #eh3 Makefile: makefile  
3004  makefile:  makefile:
3005          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3006  cleanlinks:  cleanlinks:
3007          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3008    
3009  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3010  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3011          @echo Creating \$@ ...          @echo Creating \$@ ...
3012          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3013  AD_CONFIG.h:  AD_CONFIG.h:
3014          @echo Creating \$@ ...          @echo Creating \$@ ...
3015          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3016  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3017          @echo Creating \$@ ...          @echo Creating \$@ ...
3018          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2058  test ! "x$THISUSER" = x && echo "      -echo Line 3026  test ! "x$THISUSER" = x && echo "      -echo
3026  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3027  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3028    
3029    if test "x$EMBED_SRC" = xt ; then
3030        cat >>$MAKEFILE <<EOF
3031    
3032    decode_files.o : EMBEDDED_FILES.h
3033    
3034    ##  \$(F77_PP_SRC_FILES)
3035    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3036            @echo Creating \$@ ...
3037            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3038            -rm -f all_fF.tar.gz
3039            -gzip all_fF.tar
3040    
3041    EMBEDDED_FILES.h : all_fF.tar.gz
3042            @echo Creating \$@ ...
3043            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3044    
3045    EOF
3046    fi
3047    
3048  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3049    
3050  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2065  cat >>$MAKEFILE <<EOF Line 3052  cat >>$MAKEFILE <<EOF
3052  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3053  ## %.o : %.F  ## %.o : %.F
3054    
3055    # C preprocessing and replacing the _d in constants:
3056    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3057    
3058  .F.$FS:  .F.$FS:
3059          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3060  .$FS.o:  .$FS.o:
3061          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3062    .F.o:
3063            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3064  .F90.$FS90:  .F90.$FS90:
3065          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3066    .FF90.f$FS90:
3067            \$(CPPCMD)  > \$@
3068  .$FS90.o:  .$FS90.o:
3069          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3070    .f$FS90.o:
3071            cp \$< \$(basename  \$<).f90
3072            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3073  .c.o:  .c.o:
3074          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3075    .flow.flowdir:
3076            \$(CPPCMD) > \$@
3077    
3078  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3079  .F.p:  .F.p:
3080          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3081  .p.$FS:  .p.$FS:
3082          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3083    
3084    EOF
3085    
3086  #=========================================  #=========================================
3087  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3088    #===  for TAMC/TAF  ======================
3089    
3090    if test "x$OPENAD" = x ; then
3091    
3092    cat >>$MAKEFILE <<EOF
3093    
3094  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3095  TAF            = ${TAF}  TAF            = ${TAF}
3096    
3097  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3098  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3099    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3100    
3101  EOF  EOF
3102    
# Line 2098  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3105  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3105  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3106  for i in $ad_vars ; do  for i in $ad_vars ; do
3107      name=$i      name=$i
3108      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3109      eval $t1      eval $t1
3110      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3111      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3112  done  done
3113    
3114  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3115  echo >> $MAKEFILE  echo >> $MAKEFILE
3116  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3117  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3118  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3119      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3120      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3121  done  done
3122  echo >> $MAKEFILE  echo >> $MAKEFILE
3123  rm -f ad_files  rm -f $TMP.adSrcFiles
3124    
3125  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3126    
3127  # ... AD ...  # ... AD ...
3128  adall: ad_taf  adall: ad_exe_target
3129  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3130  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3131    
3132    ad_exe_target:
3133            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3134            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3135            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3136            @-rm -f ad_config.template
3137            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3138    
3139  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3140          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3141          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3142          -rm -f ad_config.template          @-rm -f ad_config.template
3143          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3144          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3145          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3146    
3147  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3148          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          @-rm -f ad_input_code_ad.$FS ; echo ''
3149          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3150            ls -l ad_input_code_ad.$FS
3151            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3152    
3153  adtafonly:  adtafonly:
3154          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3155          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3156            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3157  ad_taf: ad_taf_output.o \$(OBJFILES)  
3158          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3159            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3160  ad_tamc_output.f: ad_input_code.f  
3161          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
3162          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3163            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3164    
3165  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3166          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3167    
3168  adonlyfwd:  adonlyfwd:
3169          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3170    
3171  adtrick:  adtrick:
3172          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3173    
3174  # ... FTL ...  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
 ftlall: ftl_taf  
 ftltaf: ftl_taf_output.f  
 ftltamc: ftl_tamc_output.f  
   
 ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  
         @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template  
         cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h  
         -rm -f ftl_config.template  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3175    
3176  ftltafonly:  # ... FTL ...
3177          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  ftlall: ftl_exe_target
3178          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3179    ftltamc: ftl_tamc_output.$FS
3180    
3181    ftl_exe_target:
3182            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3183            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3184            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3185            @-rm -f ad_config.template
3186            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3187    
3188  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3189          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3190            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191            @-rm -f ad_config.template
3192            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3193            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3194            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3195    
3196    ftl_taf_output.$FS: ftl_input_code.$FS
3197            @-rm -f ftl_input_code_tl.$FS ; echo ''
3198            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3199            ls -l ftl_input_code_tl.$FS
3200            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3201    
3202  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3203          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3204          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_tl.$FS
3205            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3206    
3207    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3208            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3209    
3210    ftl_tamc_output.$FS: ftl_input_code.$FS
3211            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3212            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3213    
3214  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3215          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3216    
3217  # ... SVD ...  # ... SVD ...
3218  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3219  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3220            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3221    svdall: svd_touch svd_taf
3222    
3223  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3224          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3225    
3226            @echo "--->>> Only COMPILE svd code! <<<---"
3227            @echo "--->>> Assumes you previously <<<---"
3228            @echo "--->>> did make svdtaf        <<<---"
3229    
3230    svd_touch:
3231            @echo "--->>> Only COMPILE svd code! <<<---"
3232            @echo "--->>> Assumes you previously <<<---"
3233            @echo "--->>> did make svdtaf        <<<---"
3234            touch ad_taf_output.$FS ftl_taf_output.$FS
3235            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3236            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3237            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3238            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3239            @-rm -f ad_config.template
3240    
3241  #=========================================  EOF
3242    
3243    fi
3244    
3245    #===  for OpenAD  ========================
3246    
3247    if test "x$OPENAD" != x ; then
3248    
3249    # ============ begin OpenAD specific section ==============
3250    
3251    cat >>$MAKEFILE <<EOF
3252    # ... OpenAD ...
3253    
3254    # all the source files linked from the various locations:
3255    ALL_LINKED_FILES= \
3256    \$(F77_SRC_FILES) \
3257    \$(C_SRC_FILES) \
3258    \$(H_SRC_FILES) \
3259    \$(F90_SRC_FILES) \
3260    \$(SPECIAL_FILES)
3261    
3262    ifndef OPENADROOT
3263      \$(error "Error:  environment variable OPENADROOT not defined!")
3264    endif
3265    
3266    ifndef XAIFSCHEMAROOT
3267      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3268    endif
3269    
3270    ifndef XAIFBOOSTERROOT
3271      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3272    endif
3273    
3274    EOF
3275    
3276    echo "  Add the source list for common block to module conversion "
3277    echo >> $MAKEFILE
3278    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3279    for i in `cat ${OAD_CB2M_FILES}` ; do
3280      echo    " \\" >> $MAKEFILE
3281      printf " $i" >> $MAKEFILE
3282    done
3283    echo >> $MAKEFILE
3284    
3285    echo "  Add the source list for AD code generation"
3286    echo >> $MAKEFILE
3287    printf "AD_FILES = " >> $MAKEFILE
3288    for i in `cat ${OAD_CB2M_FILES}` ; do
3289      echo    " \\" >> $MAKEFILE
3290      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3291    done
3292    AD_FILES=`cat $TMP.adSrcFiles`
3293    for i in $AD_FILES ; do
3294      basename=${i%%.f}
3295      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3296      if test -z "$toBeIgnored" ; then
3297        echo    " \\" >> $MAKEFILE
3298        printf " $i" >> $MAKEFILE
3299      fi
3300    done
3301    echo >> $MAKEFILE
3302    rm -f $TMP.adSrcFiles
3303    
3304    cat >>$MAKEFILE <<EOF
3305    
3306    adAll: ad_exe_target
3307    .PHONY: adAll
3308    
3309    ad_exe_target:
3310            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3311            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3312            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3313            @-rm -f ad_config.template
3314            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3315    
3316    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3317    
3318    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3319    
3320    .PHONY: adDepend
3321    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3322            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3323            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3324            -rm -f makedepend.out
3325    
3326    OPENAD_SUPPORT_F90_SRC_FILES = \
3327    w2f__types.F90 \
3328    OAD_active.F90 \
3329    OAD_cp.F90 \
3330    OAD_rev.F90 \
3331    OAD_tape.F90 \
3332    revolve.F90
3333    
3334    OPENAD_SUPPORT_C_SRC_FILES = \
3335    iaddr.c \
3336    timeRatio.c
3337    
3338    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3339            cat \$^ > \$@
3340    
3341    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3342            cat \$^ > \$@
3343    
3344    f95_test.out: f95_test_mods.f90 f95_test.f90
3345            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3346            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3347    
3348    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3349    
3350    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3351    
3352    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3353    
3354    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3355            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3356    
3357    # create sources files modules from header files containing common blocks
3358    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3359            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3360    
3361    # create new header files with USE statements for the new modules made above
3362    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3363            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3364    
3365    # change the include directives of everybody to refer to  the new header files with the USE statements
3366    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3367            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3368    
3369    # makefile debug rule
3370    small_f: \$(CB2M_F90_PP_SRC_FILES)
3371    .PHONY: small_f
3372    
3373    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3374            cat \$^ > \$@
3375    
3376    # canonicalizer
3377    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3378            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3379    
3380    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3381    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3382            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3383    
3384    # F -> WHIRL
3385    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3386            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3387    
3388    # WHIRL -> XAIF
3389    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3390            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3391    
3392    # XAIF -> XAIF'
3393    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3394            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3395    
3396    # XAIF' -> WHIRL'
3397    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3398            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3399    
3400    # WHIRL' -> F'
3401    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3402            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3403    
3404    # insert template directives
3405    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3406            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3407    
3408    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3409    # postprocess F'
3410    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3411            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3412            # the target is a placeholder to trigger a single execution of the rule
3413            touch \$@
3414    # put this so make knows about the postprocessing output
3415    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3416    
3417    # link the XAIF schema files
3418    %.xsd:
3419            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3420    
3421    # link the support files:
3422    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3423            \$(LN) \${OADTOOLS}/\$@ .
3424    
3425    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3426    
3427    # ============ end OpenAD specific section ==============
3428    
3429  EOF  EOF
3430    
3431    fi
3432    
3433    #=========================================
3434    
3435  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3436      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3437  fi  fi
# Line 2224  for i in $NOOPTFILES ; do Line 3458  for i in $NOOPTFILES ; do
3458  done  done
3459    
3460  echo "  Add rules for links"  echo "  Add rules for links"
3461  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3462  rm -f srclinks.tmp  rm -f $TMP.srclinks
3463    
3464  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3465  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2233  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3467  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3467  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3468    
3469  # Create special header files  # Create special header files
3470  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3471  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3472      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3473  else  else
# Line 2247  else Line 3481  else
3481      fi      fi
3482  fi  fi
3483  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3484      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3485  fi  fi
3486    
   
3487  #  Write the "state" for future records  #  Write the "state" for future records
3488  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3489      printf "" > genmake_state      printf "" > genmake_state
3490      for i in $gm_state ; do      for i in $gm_state ; do
3491          t1="t2=\$$i"          t1="t2=\$$i"
3492          eval $t1          eval $t1
3493          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3494      done      done
3495  fi  fi

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