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revision 1.37 by heimbach, Fri Nov 14 05:25:46 2003 UTC revision 1.105 by heimbach, Wed Oct 13 21:01:03 2004 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
243      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
244      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
245      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
253            
254      echo "test" > test      echo "test" > test
255      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # makedepend is not always available      look_for_makedepend
271      if test "x${MAKEDEPEND}" = x ; then  
272        which makedepend >& /dev/null      #================================================================
273        RETVAL=$?      #  look for possible C compilers
274        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
276           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
277        fi          rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309      fi      fi
310    
311      # look for possible fortran compilers      #================================================================
312        #  look for possible FORTRAN compilers
313      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
# Line 140  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 149  EOF Line 344  EOF
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 219  get_pdepend_list()  { Line 423  get_pdepend_list()  {
423      . ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
430  #  Explain usage  #  Explain usage
431  usage()  {  usage()  {
432      echo  cat <<EOF
433      echo "Usage: "$0" [OPTIONS]"  
434      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
435      echo    where [OPTIONS] can be:
436      echo "    -help | --help | -h | --h"  
437      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
438      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
439      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
440      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
443      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
444      echo "    -make NAME | -m NAME"  
445      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
446      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
448      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
449      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
450      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
451      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
452      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
453      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
454      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
455      echo "      -disable=NAME | --disable=NAME"  
456      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
457      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
458      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
459      echo "      -standarddirs=NAME | --standarddirs=NAME"  
460      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
461      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
462  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
463  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
464      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
465      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
466      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
467      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
468      echo "    -[no]jam | --[no]jam"  
469      echo      -makedepend NAME | -md NAME
470      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
471      echo            Use "NAME" for the MAKEDEPEND program.
472      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
473      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
476      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
477      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
478    
479        -mods NAME | --mods NAME | -mo NAME | --mo NAME
480          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
481              Here, "NAME" specifies a list of directories that are
482              used for additional source code.  Files found in the
483              "mods list" are given preference over files of the same
484              name found elsewhere.
485    
486        -disable NAME | --disable NAME
487          -disable=NAME | --disable=NAME
488              Here "NAME" specifies a list of packages that we don't
489              want to use.  If this violates package dependencies,
490              genamke will exit with an error message.
491    
492        -enable NAME | --enable NAME
493          -enable=NAME | --enable=NAME
494              Here "NAME" specifies a list of packages that we wish
495              to specifically enable.  If this violates package
496              dependencies, genamke will exit with an error message.
497    
498        -standarddirs NAME | --standarddirs NAME
499          -standarddirs=NAME | --standarddirs=NAME
500              Here, "NAME" specifies a list of directories to be
501              used as the "standard" code.
502    
503        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
504          -fc=NAME | --fc=NAME
505              Use "NAME" as the fortran compiler.  By default, genmake
506              will search for a working compiler by trying a list of
507              "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514        -[no]ieee | --[no]ieee
515              Do or don't use IEEE numerics.  Note that this option
516              *only* works if it is supported by the OPTFILE that
517              is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from \$PATH/include, link to libraries
524              from \$PATH/lib and use binaries from \$PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529      While it is most often a single word, the "NAME" variables specified
530      above can in many cases be a space-delimited string such as:
531    
532        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
533        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
534        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
535    
536      which, depending upon your shell, may need to be single-quoted.
537    
538      For more detailed genmake documentation, please see:
539    
540        http://mitgcm.org/devel_HOWTO/
541    
542    EOF
543    
544      exit 1      exit 1
545  }  }
546    
547  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
548  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
549    
550        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551        if test ! "x$FC_NAMEMANGLE" = x ; then
552            return 0
553        fi
554    
555      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556            
557      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
558  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
559  EOF  EOF
560      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
561      RETVAL=$?      RETVAL=$?
562      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
563          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
564          echo          cat <<EOF>> genmake_errors
565          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
566          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
567          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
568    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
569    EOF
570          return 1          return 1
571      fi      fi
572      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573      RETVAL=$?      RETVAL=$?
574      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
575          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
576          echo          cat <<EOF>> genmake_warnings
577          echo "WARNING: The \"nm\" command failed."  
578          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
579          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
580    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
581    EOF
582          return 1          return 1
583      fi      fi
584      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 308  EOF Line 587  EOF
587        call tsub( string )        call tsub( string )
588        end        end
589  EOF  EOF
590      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
591      RETVAL=$?      RETVAL=$?
592      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
593          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
594          echo          cat <<EOF>> genmake_warnings
595          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
596          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
597          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
598    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
599    EOF
600          return 1          return 1
601      fi      fi
602      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603      RETVAL=$?      RETVAL=$?
604      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
605          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
606          echo          cat <<EOF>> genmake_warnings
607          echo "WARNING: The \"nm\" command failed."  
608          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
609          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
610    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
611    EOF
612          return 1          return 1
613      fi      fi
614    
# Line 353  EOF Line 635  EOF
635      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
636  }  }
637    
638    
639    check_HAVE_CLOC()  {
640        get_fortran_c_namemangling
641        cat <<EOF > genmake_tc_1.c
642    $FC_NAMEMANGLE
643    #include <stdio.h>
644    #include <stdlib.h>
645    #include <unistd.h>
646    #include <assert.h>
647    #include <sys/time.h>
648    void FC_NAMEMANGLE(cloc) ( double *curtim )
649    {
650     struct timeval tv1;
651     gettimeofday(&tv1 , (void *)NULL );
652     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
653     *curtim = *curtim/1.E6;
654    }
655    EOF
656        make genmake_tc_1.o >> genmake_tc.log 2>&1
657        RET_C=$?
658        cat <<EOF > genmake_tc_2.f
659          program hello
660          Real*8 wtime
661          external cloc
662          call cloc(wtime)
663          print *," HELLO WORLD", wtime
664          end program hello
665    EOF
666        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
667        RET_F=$?
668        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
669        RETVAL=$?
670        if test "x$RETVAL" = x0 ; then
671            HAVE_CLOC=t
672            DEFINES="$DEFINES -DHAVE_CLOC"
673        fi
674        rm -f genmake_tc*
675    }
676    
677    
678    check_netcdf_libs()  {
679        echo "" > genmake_tnc.log
680        cat <<EOF > genmake_tnc.for
681          program fgennc
682    #include "netcdf.inc"
683          integer iret, ncid, xid
684          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
685          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
686          iret = nf_def_dim(ncid, 'X', 11, xid)
687          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
688          iret = nf_close(ncid)
689          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
690          end
691    EOF
692        #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"
693        #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"
694        #echo "$LINK -o genmake_tnc.o $LIBS"
695        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
696            &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
697            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
698        RET_COMPILE=$?
699    
700        #EH3  Remove test program execution for machines that either disallow
701        #EH3  execution or cannot support it (eg. cross-compilers)
702        #EH3
703        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
704        #EH3 RETVAL=$?
705        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
706    
707        if test "x$RET_COMPILE" = x0 ; then
708            HAVE_NETCDF=t
709        else
710            # try again with "-lnetcdf" added to the libs
711            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
712                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
713                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
714            RET_COMPILE=$?
715            if test "x$RET_COMPILE" = x0 ; then
716                LIBS="$LIBS -lnetcdf"
717                HAVE_NETCDF=t
718            else
719                cat genmake_tnc.log >> genmake_warnings
720            fi
721        fi
722        rm -f genmake_tnc*
723    }
724    
725    
726    
727    ###############################################################################
728    #   Sequential part of script starts here
729    ###############################################################################
730    
731  #  Set defaults here  #  Set defaults here
732  COMMANDL="$0 $@"  COMMANDL="$0 $@"
733    
# Line 361  LN= Line 736  LN=
736  S64=  S64=
737  KPP=  KPP=
738  FC=  FC=
739    #CC=gcc
740    CPP=
741  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
742  DEFINES=  DEFINES=
743  PACKAGES=  PACKAGES=
744  ENABLE=  ENABLE=
745  DISABLE=  DISABLE=
746  MAKEFILE=  MAKEFILE=
747  MAKEDEPEND=  #MAKEDEPEND=
748  PDEPEND=  PDEPEND=
749  DUMPSTATE=t  DUMPSTATE=t
750  PDEFAULT=  PDEFAULT=
# Line 379  FOPTIM= Line 755  FOPTIM=
755  CFLAGS=  CFLAGS=
756  KFLAGS1=  KFLAGS1=
757  KFLAGS2=  KFLAGS2=
758    #LDADD=
759  LIBS=  LIBS=
760  KPPFILES=  KPPFILES=
761  NOOPTFILES=  NOOPTFILES=
762  NOOPTFLAGS=  NOOPTFLAGS=
763    MPI=
764    MPIPATH=
765    
766  # DEFINES checked by test compilation  # DEFINES checked by test compilation
767  HAVE_SYSTEM=  HAVE_SYSTEM=
768  HAVE_FDATE=  HAVE_FDATE=
769  FC_NAMEMANGLE=  FC_NAMEMANGLE=
770    HAVE_CLOC=
771    HAVE_NETCDF=
772    HAVE_ETIME=
773    
774  MODS=  MODS=
775  TOOLSDIR=  TOOLSDIR=
776  SOURCEDIRS=  SOURCEDIRS=
777  INCLUDEDIRS=  INCLUDEDIRS=
778  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
779    
780    G2ARGS=
781    BASH=
782  PWD=`pwd`  PWD=`pwd`
783  MAKE=make  MAKE=make
784  AWK=awk  AWK=awk
785  THISHOSTNAME=`hostname`  THISHOST=`hostname`
786  THISCWD=`pwd`  THISCWD=`pwd`
787  THISDATE=`date`  THISDATE=`date`
788    THISUSER=`echo $USER`
789    THISVER=
790  MACHINE=`uname -a`  MACHINE=`uname -a`
791  EXECUTABLE=  EXECUTABLE=
792  EXEHOOK=  EXEHOOK=
# Line 410  IEEE= Line 796  IEEE=
796  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
797      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
798  fi  fi
799    FS=
800    FS90=
801    
802  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
803  AD_OPTFILE=  AD_OPTFILE=
# Line 426  TAMC_EXTRA= Line 814  TAMC_EXTRA=
814    
815    
816  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
817  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
818  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
819    
820  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
821  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
822  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
823  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
824  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
825  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
826    
827  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
828  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 444  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 832  gm_s12="TAF_EXTRA TAMC_EXTRA"
832  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
833  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
834    
835    cat <<EOF
836    
837    GENMAKE :
838    
839    A program for GENerating MAKEfiles for the MITgcm project.  For a
840    quick list of options, use "genmake -h" or for more detail see:
841    
842      http://mitgcm.org/devel_HOWTO/
843    
844    EOF
845    
 echo  
846  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
847  gm_local="genmake_local"  gm_local="genmake_local"
848  for i in . $MODS ; do  for i in . $MODS ; do
# Line 454  for i in . $MODS ; do Line 851  for i in . $MODS ; do
851          break          break
852      fi      fi
853  done  done
854  echo -n "  getting local config information:  "  printf "  getting local config information:  "
855  if test -e $gm_local ; then  if test -f $gm_local ; then
856      echo "using $gm_local"      echo "using $gm_local"
857      . $gm_local      . $gm_local
858      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 464  else Line 861  else
861      echo "none found"      echo "none found"
862  fi  fi
863    
864  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
865  #OPTIONS=  #OPTIONS=
866  #n=0  #n=0
867  #for i ; do  #for i ; do
# Line 476  fi Line 873  fi
873  #done  #done
874  #parse_options  #parse_options
875  ac_prev=  ac_prev=
876  for ac_option ; do  for ac_option in "$@" ; do
877    
878        G2ARGS="$G2ARGS \"$ac_option\""
879    
880      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
881      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 499  for ac_option ; do Line 898  for ac_option ; do
898          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
899              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
900                    
901          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
902              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
903          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
904              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 519  for ac_option ; do Line 918  for ac_option ; do
918          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
919              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
920                    
921            -bash | --bash)
922                ac_prev=BASH ;;
923            -bash=* | --bash=*)
924                BASH=$ac_optarg ;;
925            
926            -makedepend | --makedepend | -md | --md)
927                ac_prev=MAKEDEPEND ;;
928            -makedepend=* | --makedepend=* | -md=* | --md=*)
929                MAKEDEPEND=$ac_optarg ;;
930            
931          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
932              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
933          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
934              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
935                    
936          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
937              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
938          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
939              PLATFORM=$ac_optarg ;;              echo
940                usage
941                ;;
942                    
943          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
944              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 554  for ac_option ; do Line 965  for ac_option ; do
965          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
966              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
967    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
968  #           -cpp | --cpp)  #           -cpp | --cpp)
969  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
970  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
971  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
972                        
973            -cc | --cc)
974                ac_prev=CC ;;
975            -cc=* | --cc=*)
976                CC=$ac_optarg ;;
977            
978          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
979              ac_prev=FC ;;              ac_prev=FC ;;
980          -fc=* | --fc=*)          -fc=* | --fc=*)
981              FC=$ac_optarg ;;              FC=$ac_optarg ;;
982                    
983            -fs | --fs)
984                ac_prev=FS ;;
985            -fs=* | --fs=*)
986                FS=$ac_optarg ;;
987            
988            -fs90 | --fs90)
989                ac_prev=FS90 ;;
990            -fs90=* | --fs90=*)
991                FS90=$ac_optarg ;;
992            
993          -ieee | --ieee)          -ieee | --ieee)
994              IEEE=true ;;              IEEE=true ;;
995          -noieee | --noieee)          -noieee | --noieee)
996              IEEE= ;;              IEEE= ;;
997            
998          -mpi | --mpi)          -mpi | --mpi)
999              MPI=true ;;              MPI=true ;;
1000          -nompi | --nompi)          -mpi=* | --mpi=*)
1001              MPI= ;;              MPIPATH=$ac_optarg
1002                MPI=true ;;
1003                    
1004          -jam | --jam)  #       -jam | --jam)
1005              JAM=1 ;;  #           JAM=1 ;;
1006          -nojam | --nojam)  #       -nojam | --nojam)
1007              JAM=0 ;;  #           JAM=0 ;;
1008                    
1009          -ds | --ds)          -ds | --ds)
1010              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 623  if test -f ./.genmakerc ; then Line 1045  if test -f ./.genmakerc ; then
1045      echo      echo
1046  fi  fi
1047    
1048    #  Find the MITgcm ${ROOTDIR}
1049  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1050      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1051        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1052          ROOTDIR=".."          ROOTDIR=".."
1053      else      else
1054          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1055              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1056                  ROOTDIR=$d                  ROOTDIR=$d
1057                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1058                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1059                  break                  break
1060              fi              fi
# Line 648  if test ! -d ${ROOTDIR} ; then Line 1072  if test ! -d ${ROOTDIR} ; then
1072      exit 1      exit 1
1073  fi  fi
1074    
1075    #  Find the MITgcm ${THISVER}
1076    if test -f "${ROOTDIR}/doc/tag-index" ; then
1077        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1078    fi
1079    
1080  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1081  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1082      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 664  if test "x$OPTFILE" != xNONE ; then Line 1093  if test "x$OPTFILE" != xNONE ; then
1093          . "$OPTFILE"          . "$OPTFILE"
1094          RETVAL=$?          RETVAL=$?
1095          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1096              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1097              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1098              exit 1              exit 1
1099          fi          fi
# Line 677  if test "x$OPTFILE" != xNONE ; then Line 1106  if test "x$OPTFILE" != xNONE ; then
1106      fi      fi
1107  fi  fi
1108    
1109    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1110    # check_for_broken_Ff
1111    
1112  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1113  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1114      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 1123  if test "x${AD_OPTFILE}" != xNONE ; then
1123          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1124          RETVAL=$?          RETVAL=$?
1125          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1126              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1127              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1128              exit 1              exit 1
1129          fi          fi
# Line 704  if test "x${AD_OPTFILE}" != xNONE ; then Line 1136  if test "x${AD_OPTFILE}" != xNONE ; then
1136      fi      fi
1137  fi  fi
1138    
1139  #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1140  #  complain and abort!  #  either set defaults or complain and abort!
1141    if test ! "x$BASH" = x ; then
1142        # add a trailing space so that it works within the Makefile syntax (see below)
1143        BASH="$BASH "
1144    fi
1145  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1146      cat <<EOF 1>&2      cat <<EOF 1>&2
1147    
# Line 716  Error: no Fortran compiler: please speci Line 1152  Error: no Fortran compiler: please speci
1152  EOF  EOF
1153      exit 1      exit 1
1154  fi  fi
1155    if test "x$CC" = x ; then
1156        CC=cc
1157    #     cat <<EOF 1>&2
1158    # Error: no C compiler: please specify using one of the following:
1159    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1160    #   2) the "-cc=XXX" command-line option
1161    #   3) the "./genmake_local" file
1162    # EOF
1163    #     exit 1
1164    fi
1165  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1166      LINK=$FC      LINK=$FC
1167  fi  fi
1168    if test "x$MAKE" = x ; then
1169        MAKE="make"
1170    fi
1171  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1172      CPP="cpp"      CPP=cpp
1173  fi  fi
1174    #EH3 === UGLY ===
1175    #  The following is an ugly little hack to check for $CPP in /lib/ and
1176    #  it should eventually be replaced with a more general function that
1177    #  searches a combo of the user's path and a list of "usual suspects"
1178    #  to find the correct location for binaries such as $CPP.
1179    for i in " " "/lib/" ; do
1180        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1181    done
1182    #EH3 === UGLY ===
1183  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1184  RETVAL=$?  RETVAL=$?
1185  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 738  EOF Line 1196  EOF
1196  else  else
1197      rm -f test_cpp      rm -f test_cpp
1198  fi  fi
1199  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1200  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1201      LN="ln -s"      LN="ln -s"
1202  fi  fi
# Line 758  EOF Line 1214  EOF
1214  fi  fi
1215  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1216    
1217    #  Check for broken *.F/*.f handling and fix if possible
1218    check_for_broken_Ff
1219    
1220    if test ! "x$MPI" = x ; then
1221          echo "  Turning on MPI cpp macros"
1222          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1223    fi
1224    
1225  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1226  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1227  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1228        program hello        program hello
1229        call system('echo hi')        call system('echo hi')
# Line 777  else Line 1241  else
1241  fi  fi
1242  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1243    
1244  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1245  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1246        program hello        program hello
1247        CHARACTER(128) string        CHARACTER(128) string
# Line 798  else Line 1262  else
1262  fi  fi
1263  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1264    
1265  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1266  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.f <<EOF
1267  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1268      get_fortran_c_namemangling        REAL*4 ACTUAL, TARRAY(2)
1269  fi        EXTERNAL ETIME
1270  echo "    '$FC_NAMEMANGLE'"        REAL*4 ETIME
1271  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        actual = etime( tarray )
1272  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1        print *, tarray
1273          end
1274    EOF
1275    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1276  RETVAL=$?  RETVAL=$?
1277  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1278      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1279        DEFINES="$DEFINES -DHAVE_ETIME"
1280        echo "yes"
1281    else
1282        HAVE_ETIME=
1283        echo "no"
1284    fi
1285    rm -f genmake_tcomp*
1286    
1287    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1288    check_HAVE_CLOC
1289    if test "x$HAVE_CLOC" != x ; then
1290        echo "yes"
1291    else
1292        echo "no"
1293    fi
1294    rm -f genmake_t*
1295    
1296    printf "  Can we create NetCDF-enabled binaries...  "
1297    check_netcdf_libs
1298    if test "x$HAVE_NETCDF" != x ; then
1299        echo "yes"
1300    else
1301        echo "no"
1302  fi  fi
1303    
1304    
1305  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1306  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1307  for d in $MODS ; do  for d in $MODS ; do
1308      if test ! -d $d ; then      if test ! -d $d ; then
1309          echo          echo
1310          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1311          exit 1          exit 1
1312      else      else
1313          echo -n " $d"          printf " $d"
1314          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1315          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1316      fi      fi
# Line 835  if test "x${PLATFORM}" = x ; then Line 1325  if test "x${PLATFORM}" = x ; then
1325  fi  fi
1326    
1327  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1328      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1329        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1330          EXEDIR=../exe          EXEDIR=../exe
1331      else      else
1332          EXEDIR=.          EXEDIR=.
# Line 850  if test "x${TOOLSDIR}" = x ; then Line 1341  if test "x${TOOLSDIR}" = x ; then
1341      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1342  fi  fi
1343  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1344      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1345      exit 1      exit 1
1346  fi  fi
1347  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1348      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1349        RETVAL=$?
1350        if test "x${RETVAL}" = x0 ; then
1351            S64='$(TOOLSDIR)/set64bitConst.sh'
1352        else
1353            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1354            RETVAL=$?
1355            if test "x${RETVAL}" = x0 ; then
1356                S64='$(TOOLSDIR)/set64bitConst.csh'
1357            else
1358                cat <<EOF
1359    
1360    ERROR: neither of the two default scripts:
1361    
1362        ${TOOLSDIR}/set64bitConst.sh
1363        ${TOOLSDIR}/set64bitConst.csh
1364    
1365      are working so please check paths or specify (with \$S64) a
1366      working version of this script.
1367    
1368    EOF
1369                exit 1
1370            fi
1371        fi
1372  fi  fi
1373    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1374    
1375  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1376    
# Line 870  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1385  if test -r $ROOTDIR"/eesupp/src/Makefile
1385          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1386      else      else
1387          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1388          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1389          exit 1          exit 1
1390      fi      fi
1391  fi  fi
1392    
1393    #same for exch2
1394    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1395        echo "  Making source files in exch2 from  templates"
1396        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1397        RETVAL=$?
1398        if test "x${RETVAL}" = x0 ; then
1399            rm -f make_exch2.errors
1400        else
1401            echo "Error: problem encountered while building source files in exch2:"
1402            cat make_exch2.errors 1>&2
1403            exit 1
1404        fi
1405    fi
1406    
1407  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1408  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1409      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 907  rm -f ./.pd_tmp Line 1436  rm -f ./.pd_tmp
1436  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1437  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1438  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1439  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1440  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1441      for i in "." $MODS ; do      for i in "." $MODS ; do
1442          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 920  if test "x${PDEFAULT}" = x ; then Line 1449  if test "x${PDEFAULT}" = x ; then
1449      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1450  fi  fi
1451  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1452      echo "default packages file disabled"      echo "    default packages file disabled"
1453  else  else
1454      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1455          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1456      else      else
1457          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1458          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1459          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1460          RETVAL=$?          RETVAL=$?
1461          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1462              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1463              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1464              exit 1              exit 1
1465          fi          fi
# Line 939  else Line 1467  else
1467              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1468          done          done
1469          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1470          expand_pkg_groups          RET=1
1471            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1472          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1473      fi      fi
1474  fi  fi
1475    
1476  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1477    for i in $PACKAGES ; do
1478        echo $i >> ./.tmp_pack
1479    done
1480    for i in `grep  "-" ./.tmp_pack` ; do
1481        j=`echo $i | sed 's/[-]//'`
1482        DISABLE="$DISABLE $j"
1483    done
1484  pack=  pack=
1485  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1486      addit="t"      addit="t"
# Line 961  PACKAGES="$pack" Line 1497  PACKAGES="$pack"
1497  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1498  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1499  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1500    # Test if each explicitly referenced package exists
1501  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1502      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1503        if test ! -d "$ROOTDIR/pkg/$j" ; then
1504          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1505          exit 1          exit 1
1506      fi      fi
1507      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1508  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1509  PACKAGES=  PACKAGES=
1510  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1511      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1512  done  done
1513    rm -f ./.tmp_pack
1514  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1515    
1516    #  Check availability of NetCDF and then either build the MNC template
1517    #  files or delete mnc from the list of available packages.
1518    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1519    RETVAL=$?
1520    if test "x$RETVAL" = x0 ; then
1521        if test "x$HAVE_NETCDF" != xt ; then
1522            cat <<EOF
1523    
1524    *********************************************************************
1525    WARNING: the "mnc" package was enabled but tests failed to compile
1526      NetCDF applications.  Please check that:
1527    
1528      1) NetCDF is correctly installed for this compiler and
1529      2) the LIBS variable (within the "optfile") specifies the correct
1530           NetCDF library to link against.
1531    
1532      Due to this failure, the "mnc" package is now DISABLED.
1533    *********************************************************************
1534    
1535    EOF
1536            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1537            DISABLE="$DISABLE mnc"
1538        else
1539            ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1540            RETVAL=$?
1541            if test "x${RETVAL}" = x0 ; then
1542                rm -f make_mnc.errors
1543            else
1544                echo "Error: problem encountered while building source files in pkg/mnc:"
1545                cat make_mnc.errors 1>&2
1546                exit 1
1547            fi
1548        fi
1549    fi
1550    
1551  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1552  ck=  ck=
1553  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1040  while test "x$ck" != xtt ; do Line 1612  while test "x$ck" != xtt ; do
1612              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1613              exit 1              exit 1
1614          fi          fi
1615          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1616            #i=$(( $i + 1 ))
1617      done      done
1618      ck=$ck"t"      ck=$ck"t"
1619  done  done
# Line 1059  for i in $PACKAGES ; do Line 1632  for i in $PACKAGES ; do
1632      fi      fi
1633  done  done
1634    
   
1635  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1636  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
1637  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1638  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1639  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1640  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1641  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1642  all_pack=  all_pack=
1643    DISABLED_PACKAGES=
1644  for n in $names ; do  for n in $names ; do
1645      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1646          has_pack="f"          has_pack="f"
# Line 1091  for n in $names ; do Line 1652  for n in $names ; do
1652          done          done
1653          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1654              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1655              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1656          fi          fi
1657      fi      fi
1658  done  done
1659  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1660  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1661      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1662      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1663  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1664    
1665  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1666      case $i in      case $i in
1667          aim_v23)          aim_v23)
1668              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1669              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1670              ;;              ;;
1671      esac      esac
1672  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1673    
1674  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1675    
1676  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1677  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1678  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1679      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1680  fi  fi
1681  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1682      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1683      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1684          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1685          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1686          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1687      else              exit 1
1688          SOURCEDIRS="$SOURCEDIRS $adr"          else
1689      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1690      adr="$ROOTDIR/$d/inc"          fi
1691      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1692          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1693          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1694          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1695      else              exit 1
1696          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1697      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1698  done          fi
1699        done
1700    fi
1701    
1702  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1703  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1704  CPP_OPTIONS=  CPP_OPTIONS=
1705    CPP_EEOPTIONS=
1706  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1707    names=`ls -1 "$ROOTDIR/pkg"`
1708  for i in $spaths ; do  for i in $spaths ; do
1709      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1710      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1711          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1712          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1713          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1714            for n in $names ; do
1715                test_for_package_in_cpp_options $CPP_OPTIONS $n
1716            done
1717        fi
1718        try="$i/CPP_EEOPTIONS.h"
1719        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1720            echo "    found CPP_EEOPTIONS=\"$try\""
1721            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1722    #**** not yet enabled ****
1723    #        test_for_mpi_in_cpp_eeoptions $try
1724    #**** not yet enabled ****
1725            CPP_EEOPTIONS="$try"
1726      fi      fi
1727  done  done
1728  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1729      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1730      exit 1      exit 1
1731  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1732    
1733  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1734  #  compiler.  #  compiler.
# Line 1194  for i in $SOURCEDIRS ; do Line 1743  for i in $SOURCEDIRS ; do
1743      done      done
1744  done  done
1745    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1746    
1747  echo  echo
1748  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1749  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1750  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1751      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1752          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1753      fi      fi
1754  done  done
# Line 1222  rm -rf .links.tmp Line 1758  rm -rf .links.tmp
1758  mkdir .links.tmp  mkdir .links.tmp
1759  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1760  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1761  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1762  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1763  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1764  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1765  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1766  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1767  for d in $alldirs ; do  for d in $alldirs ; do
1768      deplist=      deplist=
# Line 1235  for d in $alldirs ; do Line 1771  for d in $alldirs ; do
1771      for sf in $sfiles ; do      for sf in $sfiles ; do
1772          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1773              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1774                    case $d/$sf in
1775                      ./$PACKAGES_DOT_H)
1776                            ;;
1777                      ./AD_CONFIG.h)
1778                            ;;
1779                      ./FC_NAMEMANGLE.h)
1780                            ;;
1781                      ./BUILD_INFO.h)
1782                            ;;
1783                      *)
1784                            touch .links.tmp/$sf
1785                            deplist="$deplist $sf"
1786                            ;;
1787                    esac
1788                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1789                  case $extn in                  case $extn in
1790                      F)                      F)
1791                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1792                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1793                          ;;                          ;;
1794                      F90)                      F90)
1795                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1796                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1797                          ;;                          ;;
1798                      c)                      c)
1799                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1800                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1801                          ;;                          ;;
1802                      h)                      h)
1803                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1804                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1805                          ;;                          ;;
1806                      flow)                      flow)
1807                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1808                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1809                          ;;                          ;;
1810                  esac                  esac
1811              fi              fi
# Line 1277  echo "" >> f90srclist.inc Line 1825  echo "" >> f90srclist.inc
1825  echo "" >> hlist.inc  echo "" >> hlist.inc
1826  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1827    
1828  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1829      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1830  fi  fi
1831  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1286  echo "#    $MACHINE" >> $MAKEFILE Line 1834  echo "#    $MACHINE" >> $MAKEFILE
1834  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1835  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1836  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1837  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1838  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1839  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1840    
1841  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
1842  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
1843  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1844    
1845  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1846    #
1847    # OPTFILE="$OPTFILE"
1848  #  #
1849  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1850  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1328  EXE_AD      = ${EXE_AD} Line 1878  EXE_AD      = ${EXE_AD}
1878  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1879  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1880    
1881    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1882    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1883    
1884    # These files are created by Makefile
1885    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1886    
1887  EOF  EOF
1888    
1889  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1345  KPP = ${KPP} Line 1901  KPP = ${KPP}
1901  FC = ${FC}  FC = ${FC}
1902  # Fortran compiler  # Fortran compiler
1903  F90C = ${F90C}  F90C = ${F90C}
1904    # C compiler
1905    CC = ${CC}
1906  # Link editor  # Link editor
1907  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1908    
1909  # Defines for CPP  # Defines for CPP
1910  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1378  cat csrclist.inc      >> $MAKEFILE Line 1936  cat csrclist.inc      >> $MAKEFILE
1936  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1937  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1938  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1939  echo               >> $MAKEFILE  echo >> $MAKEFILE
1940  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1941  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1942  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1943    echo >> $MAKEFILE
1944    echo '.SUFFIXES:' >> $MAKEFILE
1945    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1946  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1947  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1948    
1949  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1950    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1951  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1952  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1953            @echo Creating \$@ ...
1954          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1955  depend:  depend:
1956          @make links          @make links
1957          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1958          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1959            -rm -f makedepend.out
1960    
1961  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1962    
1963  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1964    
# Line 1408  output.txt: \$(EXECUTABLE) Line 1967  output.txt: \$(EXECUTABLE)
1967          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1968    
1969  clean:  clean:
1970          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1971  Clean:  Clean:
1972          @make clean          @make clean
1973          @make cleanlinks          @make cleanlinks
1974          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
1975            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1976  CLEAN:  CLEAN:
1977          @make Clean          @make Clean
1978          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1979          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1980          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1981          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1982    
1983  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1984  makefile:  makefile:
1985          ${0} $@          $THIS_SCRIPT $G2ARGS
1986  cleanlinks:  cleanlinks:
1987          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1988    
1989  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
1990  .F.f:  ${PACKAGES_DOT_H}:
1991            @echo Creating \$@ ...
1992            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1993    AD_CONFIG.h:
1994            @echo Creating \$@ ...
1995            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1996    FC_NAMEMANGLE.h:
1997            @echo Creating \$@ ...
1998            echo "$FC_NAMEMANGLE" > \$@
1999    
2000    BUILD_INFO.h:
2001            @echo Creating \$@ ...
2002    EOF
2003    
2004    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2005    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2006    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2007    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2008    
2009    cat >>$MAKEFILE <<EOF
2010    
2011    # The normal chain of rules is (  .F - .$FS - .o  )
2012    
2013    ## This nullifies any default implicit rules concerning these two file types:
2014    ## %.o : %.F
2015    
2016    .F.$FS:
2017          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2018  .f.o:  .$FS.o:
2019          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2020  .F90.f90:  .F90.$FS90:
2021          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2022  .f90.o:  .$FS90.o:
2023          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2024  .c.o:  .c.o:
2025          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2026    
2027  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2028  .F.p:  .F.p:
2029          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2030  .p.f:  .p.$FS:
2031          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2032    
2033  #=========================================  #=========================================
# Line 1469  done Line 2054  done
2054    
2055  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2056  echo >> $MAKEFILE  echo >> $MAKEFILE
2057  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2058  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2059  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2060      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2061      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2062  done  done
2063  echo >> $MAKEFILE  echo >> $MAKEFILE
2064  rm -f ad_files  rm -f ad_files
# Line 1486  adtaf: ad_taf_output.f Line 2071  adtaf: ad_taf_output.f
2071  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
2072    
2073  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2074            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2075          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2076            -rm -f ad_config.template
2077          @make \$(F77FILES)          @make \$(F77FILES)
2078          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2079          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
2080    
2081  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
2082          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2083          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2084    
2085  adtafonly:  adtafonly:
2086          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2087          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2088    
2089  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2090          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2091    
2092  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
2093          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
2094          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
2095    
2096  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2097          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2098    
2099    adonlyfwd:
2100            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2101    
2102    adtrick:
2103            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2104    
2105  # ... FTL ...  # ... FTL ...
2106  ftlall: ftl_taf  ftlall: ftl_taf
# Line 1516  ftltaf: ftl_taf_output.f Line 2108  ftltaf: ftl_taf_output.f
2108  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
2109    
2110  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2111            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2112          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2113            -rm -f ftl_config.template
2114          @make \$(F77FILES)          @make \$(F77FILES)
2115          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2116          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
2117    
2118  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
2119          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2120          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2121    
2122    ftltafonly:
2123            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2124            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2125    
2126  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2127          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2128    
2129  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
2130          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
2131          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
2132    
2133  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2134          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2135    
2136    
2137  # ... SVD ...  # ... SVD ...
2138  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
2139  svd_taf_f: svd_taf_output.f  svdall: svd_taf
   
 svd_input_code.f: \$(SRCFILES)  
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2140    
2141  svd_taf_output.f: svd_input_code.f  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
2142          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
   
 svd_taf: svd_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
2143    
2144    
2145  #=========================================  #=========================================
# Line 1569  for i in $KPPFILES ; do Line 2157  for i in $KPPFILES ; do
2157      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2158          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2159      fi      fi
2160      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2161  done  done
2162    
2163  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1579  for i in $NOOPTFILES ; do Line 2167  for i in $NOOPTFILES ; do
2167      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2168          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2169      fi      fi
2170      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2171      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2172  done  done
2173    
# Line 1592  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2180  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2180    
2181  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2182    
2183  #  Write the "template" files for the adjoint builds  # Create special header files
2184  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2185  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
2186  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2187  C    unless you are CERTAIN that you know what you are doing.  else
2188        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2189  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
2190  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
2191  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
2192  EOF      else
2193  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2194  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2195  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
2196  C    unless you are CERTAIN that you know what you are doing.  fi
2197    if test ! -f AD_CONFIG.h ; then
2198  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2199  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
2200    
2201    
2202  #  Write the "state" for future records  #  Write the "state" for future records
2203  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2204      echo -n "" > genmake_state      printf "" > genmake_state
2205      for i in $gm_state ; do      for i in $gm_state ; do
2206          t1="t2=\$$i"          t1="t2=\$$i"
2207          eval $t1          eval $t1

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