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revision 1.103 by edhill, Mon Oct 4 19:00:42 2004 UTC revision 1.262 by jmc, Thu Aug 22 20:49:59 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
213          matched=0          matched=0
214          for i in $PACKAGES ; do          for i in $PACKAGES ; do
215              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
216              RETVAL=$?              RETVAL=$?
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
224              fi              fi
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
228          return $matched          return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 102  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 122  EOF Line 280  EOF
280        stop        stop
281        end        end
282  EOF  EOF
283      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
285  .SUFFIXES:  .SUFFIXES:
286  .SUFFIXES: .$tfs .F  .SUFFIXES: .$tfs .F
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
307      fi      fi
308      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
309      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311      #  If we make it here, use the extensions      #  If we make it here, use the extensions
312      FS=$tfs      FS=$tfs
# Line 157  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 168  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
358          which makedepend > /dev/null 2>&1          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          RV0=$?          #  echo 'MAKEFILE="'$MAKEFILE'"'
360            cat <<EOF >> $MAKEFILE
361    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362    #
363    #   Some "makedepend" implementations will die if they cannot
364    #   find a Makefile -- so this file is here to gives them an
365    #   empty one to find and parse.
366    EOF
367          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
368        program test        program test
369        write(*,*) 'test'        write(*,*) 'test'
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375          if test "x${RV0}${RV1}" = x00 ; then          which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382            test -f $MAKEFILE  &&  rm -f $MAKEFILE
383            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                            echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
407          fi          fi
408      fi      fi
409  }  }
410    
   
411  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 230  build_cyrus_makedepend()  { Line 427  build_cyrus_makedepend()  {
427      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
428      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
429          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431          return 0          return 0
432      else      else
433          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434          return 1          return 1
435      fi      fi
436  }  }
437    
438  # Guess possible config options for this host  build_embed_encode()
439  find_possible_configs()  {  {
440        printf "  building the embed-encode utility...  "
441      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
444      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
446      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
447      PLATFORM=$tmp3              return 1
448      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
449      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
450      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
451                    comm="$ic -o encode_files encode_files.c"
452      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453      ln -s ./test link              RETVAL=$?
454      RETVAL=$?              if test "x$RETVAL" = x0 ; then
455      if test "x${RETVAL}" = x0 ; then                  echo "OK"
456          LN="ln -s"                  return 0
457      else              fi
458          echo "Error: \"ln -s\" does not appear to work on this system!"          done
459          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
460          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
461      fi          echo "      so it has been disabled"
462      rm -f test link          echo
463            EMBED_SRC=f
464      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
465      fi      fi
466        echo "OK"
467    }
468    
469      look_for_makedepend  #  look for possible C compilers
470    look_for_C_compilers() {
471      #================================================================      echo >> $LOGFILE
472      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
473      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
474      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
475  #include <stdio.h>  #include <stdio.h>
476  int main(int argc, char **argv) {  int main(int argc, char **argv) {
477    printf("Hello!\n");    printf("Hello!\n");
478    return 0;    return 0;
479  }  }
480  EOF  EOF
481          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483        for c in $tmp ; do
484            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485            echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487          RETVAL=$?          RETVAL=$?
488          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490              p_CC="$p_CC $c"              p_CC="$p_CC $c"
491          fi          fi
492      done      done
# Line 300  Error: No C compilers were found in your Line 502  Error: No C compilers were found in your
502  EOF  EOF
503          exit 1          exit 1
504      else      else
505          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
506          if test "x$CC" = x ; then          if test "x$CC" = x ; then
507              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
508              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
509          fi          fi
510      fi      fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530      #================================================================      #================================================================
531      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
532      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534      p_FC=      p_FC=
535      for c in $tmp ; do      rm -f ./genmake_hello.f
536          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 340  Error: No Fortran compilers were found i Line 563  Error: No Fortran compilers were found i
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
567          echo "   "$p_FC      fi
568          if test "x$FC" = x ; then  
569              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
570              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
571          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
572            for i in $p_FC ; do
573                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574                if test -r $OPTFILE ; then
575                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                    break
577                fi
578            done
579      fi      fi
580    
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 380  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603        }
604  #     # look for possible MPI libraries  
605  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
607  #     RETVAL=$?  mpi_headers_do_local_copy() {
608  #     if test "x${RETVAL}" = x0 ; then  
609  #       cat >>test.f <<EOF      dBug=0
610  #       PROGRAM HELLO      rm -rf ./mpi_headers
611  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
612  #       PRINT *,'Hello World'  
613  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
614  #       STOP          echo -n '  Check MPI headers ... '
615  #       END          listIni=$MPI_HEADER_FILES
616  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617  #       eval "$mpi_fort -showme test.f > out"          outp=$?
618  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621  #           for i in $a ; do  
622  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
623  #                   -*)          while test $doCheck = 1 ; do
624  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
625  #               esac            for i in $list2check ; do
626  #           done              if test -f $MPIINCLUDEDIR/$i ; then
627  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630  #       rm -f test.f out                for j in $newInc ; do
631  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648            #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678  }  }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
# Line 418  get_pdepend_list()  { Line 683  get_pdepend_list()  {
683      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
684      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
685      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
686          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687          > ./.pd_tmp          > ./.pd_tmp
688        RETVAL=$?
689        if test ! "x${RETVAL}" = x0 ; then
690          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691          exit 1
692        fi
693      . ./.pd_tmp      . ./.pd_tmp
694      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
695  }  }
696    
697  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 549  get_fortran_c_namemangling()  { Line 699  get_fortran_c_namemangling()  {
699    
700      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
702          return 0          return 0
703      fi      fi
704        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
706      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
707        
708      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
709  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
710  EOF  EOF
711      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
712        echo ' '$COMM >> $LOGFILE
713        $COMM >> $LOGFILE 2>&1
714      RETVAL=$?      RETVAL=$?
715      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
716          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
717          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
718    
719  WARNING: C test compile fails   WARNING: C test compile fails
720  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722  EOF  EOF
723          return 1          return 1
724      fi      fi
# Line 573  EOF Line 726  EOF
726      RETVAL=$?      RETVAL=$?
727      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
728          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
729          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
730    
731  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
732  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734  EOF  EOF
735          return 1          return 1
736      fi      fi
737      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
738        subroutine tcall( string )        subroutine tcall( string )
739        character*(*) string        character*(*) string
740        call tsub( string )        call tsub( string )
741        end        end
742  EOF  EOF
743      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744        echo ' '$COMM >> $LOGFILE
745        $COMM >> $LOGFILE 2>&1
746      RETVAL=$?      RETVAL=$?
747      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
748          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
749          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
750    
751  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754  EOF  EOF
755          return 1          return 1
756      fi      fi
# Line 603  EOF Line 758  EOF
758      RETVAL=$?      RETVAL=$?
759      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
760          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
761          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
762    
763  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
764  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766  EOF  EOF
767          return 1          return 1
768      fi      fi
# Line 633  EOF Line 788  EOF
788    
789      #  cleanup the testing files      #  cleanup the testing files
790      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
791    
792        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793    }
794    
795  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
796        echo >> $LOGFILE
797        echo "running: check_HAVE_CLOC()" >> $LOGFILE
798      get_fortran_c_namemangling      get_fortran_c_namemangling
799      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
800  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 811  void FC_NAMEMANGLE(cloc) ( double *curti
811   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
812  }  }
813  EOF  EOF
814      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
815        echo $COMM >> $LOGFILE
816        $COMM >> $LOGFILE 2>&1
817      RET_C=$?      RET_C=$?
818      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
819        program hello        program hello
820        Real*8 wtime        REAL*8 wtime
821        external cloc        external cloc
822        call cloc(wtime)        call cloc(wtime)
823        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
824        end program hello        end
825  EOF  EOF
826      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827        echo $COMM >> $LOGFILE
828        $COMM >> $LOGFILE 2>&1
829      RET_F=$?      RET_F=$?
830      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
831      RETVAL=$?      RETVAL=$?
832      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
833          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
834      fi      fi
835      rm -f genmake_tc*      rm -f genmake_tc*
836        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837    }
838    
839    check_HAVE_SIGREG()  {
840        if test ! "x$HAVE_SIGREG" = x ; then
841            return
842        fi
843        echo >> $LOGFILE
844        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <stdlib.h>
849    #include <stdio.h>
850    #include <signal.h>
851    #include <errno.h>
852    #include <ucontext.h>
853    
854    int * ip;
855    
856    static void killhandler(
857        unsigned int sn, siginfo_t  si, struct ucontext *sc )
858    {
859        *ip = *ip + 1;
860        return;
861    }
862    
863    void FC_NAMEMANGLE(sigreg) (int * aip)
864    {
865        struct sigaction s;
866        ip = aip;
867        s.sa_flags = SA_SIGINFO;
868        s.sa_sigaction = (void *)killhandler;
869        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
870            printf("Sigaction returned error = %d\n", errno);
871            exit(0);
872        }
873        return;
874    }
875    EOF
876        COMM="$CC $CFLAGS -c genmake_tc_1.c"
877        echo $COMM >> $LOGFILE
878        $COMM >> $LOGFILE 2>&1
879        RET_C=$?
880        cat <<EOF > genmake_tc_2.$FS
881          program hello
882          integer anint
883          common /iv/ anint
884          external sigreg
885          call sigreg(anint)
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> $LOGFILE 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_SIGREG=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898  }  }
899    
900    check_HAVE_SETRLSTK()  {
901        if test ! "x$HAVE_SETRLSTK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906        get_fortran_c_namemangling
907        cat <<EOF > genmake_tc_1.c
908    $FC_NAMEMANGLE
909    #include <sys/time.h>
910    #include <sys/resource.h>
911    #include <unistd.h>
912    void FC_NAMEMANGLE(setrlstk) ()
913    {
914        struct rlimit rls;
915        rls.rlim_cur = RLIM_INFINITY;
916        rls.rlim_max = RLIM_INFINITY;
917        setrlimit(RLIMIT_STACK, &rls);
918        return;
919    }
920    EOF
921        COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> $LOGFILE 2>&1
924        RET_C=$?
925        cat <<EOF > genmake_tc_2.$FS
926          program hello
927          external setrlstk
928          call setrlstk()
929          end
930    EOF
931        cat genmake_tc_2.$FS >> $LOGFILE
932        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933        echo $COMM >> $LOGFILE
934        $COMM >> $LOGFILE 2>&1
935        RETVAL=$?
936        if test "x$RETVAL" = x0 ; then
937            HAVE_SETRLSTK=t
938        fi
939        rm -f genmake_tc*
940        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941    }
942    
943    check_HAVE_STAT()  {
944        echo >> $LOGFILE
945        echo "running: check_HAVE_STAT()" >> $LOGFILE
946        get_fortran_c_namemangling
947        cat <<EOF > genmake_tc_1.c
948    $FC_NAMEMANGLE
949    #include <stdio.h>
950    #include <stdlib.h>
951    #include <unistd.h>
952    #include <sys/stat.h>
953    #include <sys/types.h>
954    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
955    {
956        char name[512];
957        struct stat astat;
958    
959        name[0] = 'a'; name[1] = '\0';
960        if (! stat(name, &astat))
961            *nbyte = (int)(astat.st_size);
962        else
963            *nbyte = -1;
964    }
965    EOF
966        COMM="$CC $CFLAGS -c genmake_tc_1.c"
967        echo $COMM >> $LOGFILE
968        $COMM >> genmake_tc.log 2>&1
969        RET_C=$?
970        cat <<EOF > genmake_tc_2.$FS
971          program hello
972          integer nbyte
973          call tfsize(nbyte)
974          print *," HELLO WORLD", nbyte
975          end
976    EOF
977        cat genmake_tc_2.$FS >> $LOGFILE
978        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979        echo $COMM >> $LOGFILE
980        $COMM >> genmake_tc.log 2>&1
981        RETVAL=$?
982        if test "x$RETVAL" = x0 ; then
983            HAVE_STAT=t
984        fi
985        rm -f genmake_tc*
986        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987    }
988    
989  check_netcdf_libs()  {  check_netcdf_libs()  {
990      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991      cat <<EOF > genmake_tnc.for          return
992        fi
993        echo >> $LOGFILE
994        echo "running: check_netcdf_libs()" >> $LOGFILE
995        cat <<EOF > genmake_tnc.F
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998    EOF
999       #if test ! "x$MPI" = x ; then
1000       #    echo '#include "mpif.h"' >> genmake_tnc.F
1001       #fi
1002        cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1005        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 1009  check_netcdf_libs()  {
1009        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010        end        end
1011  EOF  EOF
1012      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1013      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
1014      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1015      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
1016          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1      echo "$COMM" >> genmake_tnc.log
1018        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1019        if test "x$RET_CPP" = xf ; then
1020            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1021                >> genmake_tnc.log
1022            echo "    Please check that \$INCLUDES is properly set." \
1023                >> genmake_tnc.log
1024        fi
1025        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1026        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1027        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1028            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029      RET_COMPILE=$?      RET_COMPILE=$?
1030        cat genmake_tnc.log >> $LOGFILE
1031    
1032      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1033      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 706  EOF Line 1038  EOF
1038    
1039      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1040          HAVE_NETCDF=t          HAVE_NETCDF=t
1041            echo "check_netcdf: successful" >> $LOGFILE
1042      else      else
1043          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1044          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1048            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1049                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1050                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051          RET_COMPILE=$?          RET_COMPILE=$?
1052            echo >> $LOGFILE
1053            cat genmake_tnc.log >> $LOGFILE
1054          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1055              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1056              HAVE_NETCDF=t              HAVE_NETCDF=t
1057                echo "check_netcdf: successful" >> $LOGFILE
1058          else          else
1059              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
1060                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1064                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1065                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1066                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067                RET_COMPILE=$?
1068                echo >> $LOGFILE
1069                cat genmake_tnc.log >> $LOGFILE
1070                if test "x$RET_COMPILE" = x0 ; then
1071                    LIBS="$LIBS -lnetcdff -lnetcdf"
1072                    HAVE_NETCDF=t
1073                    echo "check_netcdf: successful" >> $LOGFILE
1074                fi
1075          fi          fi
1076      fi      fi
1077      rm -f genmake_tnc*      rm -f genmake_tnc*
1078        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079    }
1080    
1081    check_lapack_libs()  {
1082        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083            return
1084        fi
1085        echo >> $LOGFILE
1086        echo "running: check_lapack_libs()" >> $LOGFILE
1087        cat <<EOF > genmake_tla.F
1088          program fgenla
1089          integer info
1090          integer ipiv( 2 )
1091          double precision ab( 4, 2 ), b( 2 )
1092          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093          data b / 1., 1. /
1094          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095          IF (info .NE. 0) write(*,*) 'Error:', info
1096          write(*,*) b
1097          end
1098    EOF
1099        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1100        cat genmake_tla.F >> genmake_tla.log
1101        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1102        RET_CPP=f
1103        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104        echo "$COMM" >> genmake_tla.log
1105        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1106        if test "x$RET_CPP" = xf ; then
1107            echo "  WARNING: CPP failed to pre-process the lapack test." \
1108                >> genmake_tla.log
1109            echo "    Please check that \$INCLUDES is properly set." \
1110                >> genmake_tla.log
1111        fi
1112        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1113        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1115            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116        RET_COMPILE=$?
1117        cat genmake_tla.log >> $LOGFILE
1118    
1119        # test program execution not always possible (see check_netcdf_libs)
1120        #
1121        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1122        #RETVAL=$?
1123        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124    
1125        if test "x$RET_COMPILE" = x0 ; then
1126            HAVE_LAPACK=t
1127            echo "check_lapack: successful" >> $LOGFILE
1128        else
1129            # try again with "-llapack" added to the libs
1130            echo "==> try again with added '-llapack'" > genmake_tla.log
1131            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1135                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1136                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137            RET_COMPILE=$?
1138            echo >> $LOGFILE
1139            cat genmake_tla.log >> $LOGFILE
1140            if test "x$RET_COMPILE" = x0 ; then
1141                LIBS="$LIBS -llapack"
1142                HAVE_LAPACK=t
1143                echo "check_lapack: successful" >> $LOGFILE
1144            else
1145            # try again with "-lf77blas -lcblas" added to the libs
1146                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1151                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1152                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153                RET_COMPILE=$?
1154                echo >> $LOGFILE
1155                cat genmake_tla.log >> $LOGFILE
1156                if test "x$RET_COMPILE" = x0 ; then
1157                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                    HAVE_LAPACK=t
1159                    echo "check_lapack: successful" >> $LOGFILE
1160                else
1161                # try again with "-latlas" added to the libs
1162                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                    RET_COMPILE=$?
1170                    echo >> $LOGFILE
1171                    cat genmake_tla.log >> $LOGFILE
1172                    if test "x$RET_COMPILE" = x0 ; then
1173                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                        HAVE_LAPACK=t
1175                        echo "check_lapack: successful" >> $LOGFILE
1176                    fi
1177                fi
1178            fi
1179        fi
1180        rm -f genmake_tla*
1181        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182  }  }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 735  PLATFORM= Line 1232  PLATFORM=
1232  LN=  LN=
1233  S64=  S64=
1234  KPP=  KPP=
1235  FC=  #FC=
1236  #CC=gcc  #CC=gcc
1237  CPP=  #CPP=
1238  LINK=  LINK=
1239  DEFINES=  DEFINES=
1240  PACKAGES=  PACKAGES=
1241  ENABLE=  ENABLE=
1242  DISABLE=  DISABLE=
1243  MAKEFILE=  # MAKEFILE=
1244  #MAKEDEPEND=  # MAKEDEPEND=
1245  PDEPEND=  PKG_DEPEND=
1246  DUMPSTATE=t  PKG_GROUPS=
1247  PDEFAULT=  DUMPSTATE=f
1248  OPTFILE=  OPTFILE=
1249  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1250  FFLAGS=  FFLAGS=
1251  FOPTIM=  FOPTIM=
1252    FEXTRAFLAGS=
1253    USE_EXTENDED_SRC=
1254    EXTENDED_SRC_FLAG=
1255    GET_FC_VERSION=
1256  CFLAGS=  CFLAGS=
1257  KFLAGS1=  KFLAGS1=
1258  KFLAGS2=  KFLAGS2=
# Line 762  NOOPTFILES= Line 1263  NOOPTFILES=
1263  NOOPTFLAGS=  NOOPTFLAGS=
1264  MPI=  MPI=
1265  MPIPATH=  MPIPATH=
1266    OMP=
1267    OMPFLAG=
1268    USE_R4=
1269    TS=
1270    PAPIS=
1271    PCLS=
1272    FOOLAD=
1273    PAPI=
1274    PCL=
1275    HPMT=
1276    GSL=
1277    DEVEL=
1278    HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
1286  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1287  HAVE_CLOC=  HAVE_CLOC=
1288    # HAVE_SETRLSTK=
1289    HAVE_STAT=
1290  HAVE_NETCDF=  HAVE_NETCDF=
1291  HAVE_ETIME=  HAVE_ETIME=
1292    IGNORE_TIME=
1293    HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 777  SOURCEDIRS= Line 1299  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305  G2ARGS=  G2ARGS=
1306  BASH=  BASH=
1307  PWD=`pwd`  PWD=`pwd`
1308  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1309  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1310    EMBED_SRC=
1311  THISHOST=`hostname`  THISHOST=`hostname`
1312  THISCWD=`pwd`  THISCWD=`pwd`
1313  THISDATE=`date`  THISDATE=`date`
# Line 791  MACHINE=`uname -a` Line 1317  MACHINE=`uname -a`
1317  EXECUTABLE=  EXECUTABLE=
1318  EXEHOOK=  EXEHOOK=
1319  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1320  IEEE=  IEEE=
1321  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1322      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 812  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364    
1365  cat <<EOF  cat <<EOF
1366    
1367  GENMAKE :  GENMAKE :
1368    
1369  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1370  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1371    or for more detail see the Developer's HOWTO manual at:
1372    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1373    
1374  EOF  EOF
1375    
1376    LOGFILE="genmake.log"
1377    #- clean-up previous genmake logfiles:
1378    rm -f genmake_state genmake_*optfile $LOGFILE
1379    
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1383  #parse_options  #parse_options
1384  ac_prev=  ac_prev=
1385  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 883  for ac_option in "$@" ; do Line 1392  for ac_option in "$@" ; do
1392          ac_prev=          ac_prev=
1393          continue          continue
1394      fi      fi
1395        
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397        
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pdefault | --pdefault)          -pgroups | --pgroups)
1421              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1422          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1423              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -bash | --bash)          -bash | --bash)
1431              ac_prev=BASH ;;              ac_prev=BASH ;;
1432          -bash=* | --bash=*)          -bash=* | --bash=*)
1433              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1434            
1435          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1436              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1437          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1438              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1447              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1448              echo              echo
1449              usage              usage
1450              ;;              ;;
1451            
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 969  for ac_option in "$@" ; do Line 1478  for ac_option in "$@" ; do
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481            
1482          -cc | --cc)          -cc | --cc)
1483              ac_prev=CC ;;              ac_prev=CC ;;
1484          -cc=* | --cc=*)          -cc=* | --cc=*)
1485              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1486            
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492          -fs | --fs)          -fs | --fs)
1493              ac_prev=FS ;;              ac_prev=FS ;;
1494          -fs=* | --fs=*)          -fs=* | --fs=*)
1495              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1496            
1497          -fs90 | --fs90)          -fs90 | --fs90)
1498              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1499          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1500              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1501            
1502            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503                USE_R4=true ;;
1504    
1505          -ieee | --ieee)          -ieee | --ieee)
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509            -devel | --devel)
1510                IEEE=true ; DEVEL=true ;;
1511            -gsl | --gsl)
1512                GSL=true ;;
1513    
1514            -ts | --ts)
1515                TS=true ;;
1516            -papis | --papis)
1517                PAPIS=true ;;
1518            -pcls | --pcls)
1519                PCLS=true ;;
1520            -foolad | --foolad)
1521                FOOLAD=true ;;
1522            -papi | --papi)
1523                PAPI=true ;;
1524            -pcl | --pcl)
1525                PCL=true ;;
1526            -hpmt | --hpmt)
1527                HPMT=true ;;
1528    
1529          -mpi | --mpi)          -mpi | --mpi)
1530              MPI=true ;;              MPI=true ;;
1531          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1532              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1533              MPI=true ;;              MPI=true ;;
1534            
1535  #       -jam | --jam)          -omp | --omp)
1536  #           JAM=1 ;;              OMP=true ;;
1537  #       -nojam | --nojam)          -omp=* | --omp=*)
1538  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1539                        OMP=true ;;
1540    
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544            -extra_flag | --extra_flag)
1545                ac_prev=FEXTRAFLAGS ;;
1546            -extra_flag=* | --extra_flag=*)
1547                FEXTRAFLAGS=$ac_optarg ;;
1548    
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1019  for ac_option in "$@" ; do Line 1556  for ac_option in "$@" ; do
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558    
1559            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560                IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
1562            -es | --es | -embed-source | --embed-source)
1563                EMBED_SRC=t ;;
1564    
1565          -*)          -*)
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576        
1577  done  done
1578    
1579    #TMP=./genmk_$$
1580    #- try to put temporary files in system-local /tmp dir
1581    TMP=/tmp/genmk_$$
1582    touch $TMP ; retVal=$?
1583    if [ $retVal -eq 0 ] ; then
1584      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1585    else
1586      TMP=./genmk_$$
1587    fi
1588    rm -f $TMP
1589    #echo "  temp files: $TMP.*"
1590    
1591    printf "  getting local config information:  "
1592    if test -f $gm_local ; then
1593        echo "using $gm_local"
1594        . $gm_local
1595    else
1596        echo "none found"
1597    fi
1598    
1599  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1600      echo      echo
1601      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1602      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1603      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1604      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1605        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1606        echo "WARNING: ignore \"./.genmakerc\" and continue."
1607      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1608  fi  fi
1609    
1610  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1611  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1612      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1613      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1614          ROOTDIR=".."          ROOTDIR=".."
1615      else      else
1616          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1617              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1618                  ROOTDIR=$d                  ROOTDIR=$d
1619                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1620                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1621                  break                  break
1622              fi              fi
1623          done          done
# Line 1073  if test ! -d ${ROOTDIR} ; then Line 1635  if test ! -d ${ROOTDIR} ; then
1635  fi  fi
1636    
1637  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1638  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1639      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1640        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1641    #-  remove ./BUILD_INFO.h file if older than version_file
1642        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1643            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1644            rm -f ./BUILD_INFO.h
1645        fi
1646    fi
1647    
1648    if test "x$MAKEFILE" = x ; then
1649        MAKEFILE="Makefile"
1650  fi  fi
1651    
1652  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1653  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1654      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1655          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1656          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1657          find_possible_configs          find_possible_optfile
1658      else      else
1659          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1660      fi      fi
# Line 1097  if test "x$OPTFILE" != xNONE ; then Line 1669  if test "x$OPTFILE" != xNONE ; then
1669              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1670              exit 1              exit 1
1671          fi          fi
1672          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1673              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1674          fi          fi
1675      else      else
# Line 1106  if test "x$OPTFILE" != xNONE ; then Line 1678  if test "x$OPTFILE" != xNONE ; then
1678      fi      fi
1679  fi  fi
1680    
1681  #  Check for broken systems that cannot correctly distinguish *.F and *.f files  echo "  getting AD_OPTFILE information:"
 # check_for_broken_Ff  
   
 echo "  getting AD_OPTFILE information:  "  
1682  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1683      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1684          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1127  if test "x${AD_OPTFILE}" != xNONE ; then Line 1696  if test "x${AD_OPTFILE}" != xNONE ; then
1696              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1697              exit 1              exit 1
1698          fi          fi
1699          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1700              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1701          fi          fi
1702      else      else
# Line 1136  if test "x${AD_OPTFILE}" != xNONE ; then Line 1705  if test "x${AD_OPTFILE}" != xNONE ; then
1705      fi      fi
1706  fi  fi
1707    
1708    #====================================================================
1709    #  Set default values if not set by the optfile
1710    #
1711  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1712  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1713  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1152  Error: no Fortran compiler: please speci Line 1724  Error: no Fortran compiler: please speci
1724  EOF  EOF
1725      exit 1      exit 1
1726  fi  fi
1727    if test "x$GET_FC_VERSION" != x ; then
1728      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1729      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1730      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1731      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1732      if test -s genmake_fc_vers1 ; then
1733        cat genmake_fc_vers1 >> $LOGFILE
1734      else
1735        cat genmake_fc_vers2 >> $LOGFILE
1736      fi
1737      echo "<-- compiler version ----" >> $LOGFILE
1738      rm -f genmake_fc_vers1 genmake_fc_vers2
1739    fi
1740    
1741  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1742      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1743  fi  fi
1744    
1745  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1746      LINK=$FC      LINK=$FC
1747  fi  fi
# Line 1169  if test "x$MAKE" = x ; then Line 1749  if test "x$MAKE" = x ; then
1749      MAKE="make"      MAKE="make"
1750  fi  fi
1751  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1752      CPP=cpp      CPP="cpp -traditional -P"
1753  fi  fi
1754  #EH3 === UGLY ===  #EH3 === UGLY ===
1755  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1196  EOF Line 1776  EOF
1776  else  else
1777      rm -f test_cpp      rm -f test_cpp
1778  fi  fi
1779    
1780  look_for_makedepend  look_for_makedepend
1781    
1782    #  Check that soft-link command is set and usable
1783  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1784      LN="ln -s"      LN="ln -s"
1785  fi  fi
# Line 1206  RETVAL=$? Line 1789  RETVAL=$?
1789  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1790      cat <<EOF 1>&2      cat <<EOF 1>&2
1791    
1792  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1793    command in the optfile.    command in the optfile.
1794    
1795  EOF  EOF
1796      exit 1      exit 1
1797  fi  fi
1798    test -L genmake_tlink > /dev/null 2>&1
1799    RETVAL=$?
1800    if test "x$RETVAL" = x0 ; then
1801        HAVE_TEST_L=t
1802    fi
1803  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1804    
1805  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1219  check_for_broken_Ff Line 1807  check_for_broken_Ff
1807    
1808  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1809        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1810        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1811    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1812    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1813    fi
1814    if test ! "x$OMP" = x ; then
1815          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1816          FFLAGS="$FFLAGS $OMPFLAG"
1817          F90FLAGS="$F90FLAGS $OMPFLAG"
1818          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1819    fi
1820    
1821    if test ! "x$USE_R4" = x ; then
1822          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1823          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1824    fi
1825    
1826    if test ! "x$TS" = x ; then
1827          echo "  Turning on timing per timestep"
1828          if test ! "x$FOOLAD" = x ; then
1829                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1830          else
1831                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1832          fi
1833          PACKAGES="$PACKAGES showflops"
1834    fi
1835    if test ! "x$PAPIS" = x ; then
1836          echo "  Turning on PAPI flop summary per timestep"
1837          echo "  Please make sure PAPIINC, PAPILIB are defined"
1838          if test ! "x$FOOLAD" = x ; then
1839                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1840          else
1841                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1842          fi
1843          INCLUDES="$INCLUDES $PAPIINC"
1844          LIBS="$LIBS $PAPILIB"
1845          PACKAGES="$PACKAGES showflops"
1846    fi
1847    if test ! "x$PCLS" = x ; then
1848          echo "  Turning on PCL counter summary per timestep"
1849          echo "  Please make sure PCLINC, PCLLIB are defined"
1850          if test ! "x$FOOLAD" = x ; then
1851                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1852          else
1853                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1854          fi
1855          INCLUDES="$INCLUDES $PCLINC"
1856          LIBS="$LIBS $PCLLIB"
1857          PACKAGES="$PACKAGES showflops"
1858    fi
1859    if test ! "x$PAPI" = x ; then
1860          if test ! "x$PAPIS" = x ; then
1861              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1862              echo "  Sticking with PAPI flop summary per timestep!"
1863          else
1864              echo "  Turning on performance analysis with PAPI"
1865              echo "  Please make sure PAPIINC, PAPILIB are defined"
1866              DEFINES="$DEFINES -DUSE_PAPI"
1867              INCLUDES="$INCLUDES $PAPIINC"
1868              LIBS="$LIBS $PAPILIB"
1869          fi
1870    fi
1871    if test ! "x$PCL" = x ; then
1872          if test ! "x$PCLS" = x ; then
1873              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1874              echo "  Sticking with PCL flop summary per timestep!"
1875          else
1876              echo "  Turning on performance analysis with PCL"
1877              echo "  Please make sure PCLINC, PCLLIB are defined"
1878              DEFINES="$DEFINES -DUSE_PCL"
1879              INCLUDES="$INCLUDES $PCLINC"
1880              LIBS="$LIBS $PCLLIB"
1881          fi
1882    fi
1883    if test ! "x$HPMT" = x ; then
1884          if test ! "x$PAPI" = x ; then
1885              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1886              echo "  Sticking with PAPI!"
1887          else
1888            if test ! "x$PCL" = x ; then
1889              echo "  PCL and the HPM Toolkit cannot co-exist!"
1890              echo "  Sticking with PCL!"
1891            else
1892              echo "  Turning on performance analysis with the HPM Toolkit"
1893              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1894              DEFINES="$DEFINES -DUSE_LIBHPM"
1895              INCLUDES="$INCLUDES $HPMTINC"
1896              LIBS="$LIBS $HPMTLIB"
1897            fi
1898          fi
1899    fi
1900    if test ! "x$GSL" = x ; then
1901          echo "  Turning on use of GSL to control floating point calculations"
1902          echo "  Please make sure GSLINC, GSLLIB are defined"
1903          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1904          INCLUDES="$INCLUDES $GSLINC"
1905          LIBS="$LIBS $GSLLIB"
1906    fi
1907    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1908    if test ! "x$USE_EXTENDED_SRC" = x ; then
1909          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1910          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1911  fi  fi
1912    
1913  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1914  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1915  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1916        program hello        program hello
1917        call system('echo hi')        call system('echo hi')
1918        end        end
1919  EOF  EOF
1920  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1921  RETVAL=$?  RETVAL=$?
1922  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1923      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1242  fi Line 1930  fi
1930  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1931    
1932  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1933  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1934        program hello        program hello
1935        CHARACTER(128) string        CHARACTER*(128) string
1936        string = ' '        string = ' '
1937        call fdate( string )        call fdate( string )
1938        print *, string        print *, string
1939        end        end
1940  EOF  EOF
1941  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1942  RETVAL=$?  RETVAL=$?
1943  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1944      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1263  fi Line 1951  fi
1951  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1952    
1953  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1954  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1955        program hello        program hello
1956        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1957        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1272  cat > genmake_tcomp.f <<EOF Line 1960  cat > genmake_tcomp.f <<EOF
1960        print *, tarray        print *, tarray
1961        end        end
1962  EOF  EOF
1963  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1964  RETVAL=$?  RETVAL=$?
1965  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1966      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1284  else Line 1972  else
1972  fi  fi
1973  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1974    
1975  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1976  check_HAVE_CLOC  check_HAVE_CLOC
1977  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1978        DEFINES="$DEFINES -DHAVE_CLOC"
1979        echo "yes"
1980    else
1981        echo "no"
1982        if test "x$EMBED_SRC" = xt ; then
1983            echo "    WARNING: you requested file embedding but it has"
1984            echo "      been disabled since C code cannot be called"
1985            EMBED_SRC=
1986        fi
1987    fi
1988    rm -f genmake_t*
1989    
1990    printf "  Can we unlimit the stack size using $FC...  "
1991    check_HAVE_SETRLSTK
1992    if test "x$HAVE_SETRLSTK" = xt ; then
1993        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1994        echo "yes"
1995    else
1996        echo "no"
1997    fi
1998    rm -f genmake_t*
1999    
2000    printf "  Can we register a signal handler using $FC...  "
2001    check_HAVE_SIGREG
2002    if test "x$HAVE_SIGREG" = xt ; then
2003        DEFINES="$DEFINES -DHAVE_SIGREG"
2004        echo "yes"
2005    else
2006        echo "no"
2007    fi
2008    rm -f genmake_t*
2009    
2010    printf "  Can we use stat() through C calls...  "
2011    check_HAVE_STAT
2012    if test "x$HAVE_STAT" != x ; then
2013        DEFINES="$DEFINES -DHAVE_STAT"
2014      echo "yes"      echo "yes"
2015  else  else
2016      echo "no"      echo "no"
# Line 1296  rm -f genmake_t* Line 2020  rm -f genmake_t*
2020  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2021  check_netcdf_libs  check_netcdf_libs
2022  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2023        DEFINES="$DEFINES -DHAVE_NETCDF"
2024        echo "yes"
2025    else
2026        echo "no"
2027    fi
2028    
2029    printf "  Can we create LAPACK-enabled binaries...  "
2030    check_lapack_libs
2031    if test "x$HAVE_LAPACK" != x ; then
2032        DEFINES="$DEFINES -DHAVE_LAPACK"
2033        echo "yes"
2034    else
2035        echo "no"
2036    fi
2037    
2038    printf "  Can we call FLUSH intrinsic subroutine...  "
2039    check_HAVE_FLUSH
2040    if test "x$HAVE_FLUSH" = xt ; then
2041        DEFINES="$DEFINES -DHAVE_FLUSH"
2042      echo "yes"      echo "yes"
2043  else  else
2044      echo "no"      echo "no"
2045  fi  fi
2046    
2047    DEFINES="$DEFINES $IGNORE_TIME"
2048    if test "x$EMBED_SRC" = xt ; then
2049        build_embed_encode
2050    fi
2051    if test "x$EMBED_SRC" = xt ; then
2052        ENABLE="$ENABLE embed_files"
2053    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2054    fi
2055    
2056  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2057  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2058  for d in $MODS ; do  for d in $MODS ; do
2059      if test ! -d $d ; then      if test ! -d $d ; then
2060          echo          echo
2061          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2062          exit 1          exit 1
2063      else      else
2064          printf " $d"          printf "$d "
2065          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2066          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2067      fi      fi
2068  done  done
2069  echo  echo
2070    
2071  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2072      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2073  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2074    
2075  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2076      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2077      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2078          EXEDIR=../exe          EXEDIR=../exe
2079      else      else
# Line 1345  if test ! -d ${TOOLSDIR} ; then Line 2093  if test ! -d ${TOOLSDIR} ; then
2093      exit 1      exit 1
2094  fi  fi
2095  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2096      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2097        RETVAL=$?
2098        if test "x${RETVAL}" = x0 ; then
2099            S64='$(TOOLSDIR)/set64bitConst.sh'
2100        else
2101            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2102            RETVAL=$?
2103            if test "x${RETVAL}" = x0 ; then
2104                S64='$(TOOLSDIR)/set64bitConst.csh'
2105            else
2106                cat <<EOF
2107    
2108    ERROR: neither of the two default scripts:
2109    
2110        ${TOOLSDIR}/set64bitConst.sh
2111        ${TOOLSDIR}/set64bitConst.csh
2112    
2113      are working so please check paths or specify (with \$S64) a
2114      working version of this script.
2115    
2116    EOF
2117                exit 1
2118            fi
2119        fi
2120  fi  fi
2121  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2122    
2123  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2124    
2125    #  Set Standard Code Directories:
2126    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2127        STANDARDDIRS="eesupp model"
2128    fi
2129    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2130    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2131    ckM=$?
2132    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2133    ckE=$?
2134    if test $ckM = 0 -a $ckE = 1 ; then
2135        STANDARDDIRS="$STANDARDDIRS eesupp"
2136    fi
2137    
2138  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2139  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2140  #  they appear as regular source code  #  they appear as regular source code
2141  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2142      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2143      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2144        ) > make_eesupp.errors 2>&1
2145      RETVAL=$?      RETVAL=$?
2146      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2147          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1367  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2152  if test -r $ROOTDIR"/eesupp/src/Makefile
2152      fi      fi
2153  fi  fi
2154    
2155  #same for exch2  #same for pkg/exch2 and pkg/regrid
2156  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2157      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2158      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2159      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2160      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2161          rm -f make_exch2.errors          RETVAL=$?
2162      else          if test "x${RETVAL}" = x0 ; then
2163          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2164          cat make_exch2.errors 1>&2          else
2165          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2166                cat make_${pdir}.errors 1>&2
2167                exit 1
2168            fi
2169      fi      fi
2170  fi  done
2171    
2172  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2173  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2174      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2175      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2176          PDEPEND=$tmp  fi
2177      else  if  test "x${PKG_DEPEND}" = x ; then
2178          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2179          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2180  else  else
2181      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2182          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2183          exit 1          exit 1
2184      fi      fi
2185        echo "  getting package dependency info from  $PKG_DEPEND"
2186    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2187        get_pdepend_list $PKG_DEPEND
2188  fi  fi
2189  echo "  getting package dependency info from  $PDEPEND"  
2190  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2191  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2192  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2193      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2194      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2195  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2196  if test ! "x${RETVAL}" = x0 ; then  fi
2197      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2198      exit 1          echo "Warning:  No package groups information was specified."
2199            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2200    else
2201        if test ! -r ${PKG_GROUPS} ; then
2202            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2203            exit 1
2204        fi
2205        echo "  getting package groups info from      $PKG_GROUPS"
2206  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2207    
2208  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2209  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2210  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2211  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2212      for i in "." $MODS ; do      for i in "." $MODS ; do
2213          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2214                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2215                  break                  break
2216          fi          fi
2217      done      done
2218  fi  fi
2219  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2220      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2221  fi      if test "x${PKG_GROUPS}" = x ; then
2222  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2223      echo "    default packages file disabled"          exit 1
2224        fi
2225  else  else
2226      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2227          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2228            exit 1
2229      else      else
2230          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2231          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2232          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2233          RETVAL=$?          RETVAL=$?
2234          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2235              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2236              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2237              exit 1              exit 1
2238          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2239      fi      fi
2240  fi  fi
2241    for i in $pkg_list ; do
2242        PACKAGES="$PACKAGES $i"
2243    done
2244    echo     "    before group expansion packages are:$PACKAGES"
2245    if test "x${PKG_GROUPS}" != x ; then
2246        RET=1
2247        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2248        echo "    after group expansion packages are: $PACKAGES"
2249    fi
2250    
2251  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2252    echo "" > $TMP.pack
2253  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2254      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2255  done  done
2256  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2257      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2258      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2259  done  done
# Line 1472  for p in $PACKAGES ; do Line 2271  for p in $PACKAGES ; do
2271  done  done
2272  PACKAGES="$pack"  PACKAGES="$pack"
2273  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2274  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2275  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2276  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2277  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2278      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2279      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2280          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2281          exit 1          exit 1
2282      fi      fi
2283      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2284  done  done
2285  PACKAGES=  PACKAGES=
2286  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2287      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2288  done  done
2289  rm -f ./.tmp_pack  rm -f $TMP.pack
2290  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2291    
2292  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2293  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2294  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2295  RETVAL=$?  mnc_in=$?
2296  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2297      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2298          cat <<EOF          cat <<EOF
   
2299  *********************************************************************  *********************************************************************
2300  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2301    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2302    
2303    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2304    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2305         NetCDF library to link against.         NetCDF library to link against.
2306    
2307    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2308  *********************************************************************  *********************************************************************
   
2309  EOF  EOF
2310          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2311          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2312      else      else
2313          ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2314          RETVAL=$?          DISABLE="$DISABLE mnc"
2315          if test "x${RETVAL}" = x0 ; then      fi
2316              rm -f make_mnc.errors  else
2317          else      # we have NetCDF, we try to build MNC template files
2318              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2319              cat make_mnc.errors 1>&2      RETVAL=$?
2320        if test "x${RETVAL}" = x0 ; then
2321            rm -f make_mnc.errors
2322        else
2323            echo "Error: problem encountered while building source files in pkg/mnc:"
2324            cat make_mnc.errors 1>&2
2325            if test "x$mnc_in" = x0 ; then
2326              exit 1              exit 1
2327            else
2328                DISABLE="$DISABLE mnc"
2329          fi          fi
2330      fi      fi
2331  fi  fi
2332    
2333  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2334  ck=  #  then delete profiles from the list of available packages.
2335  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2336        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2337        RETVAL=$?
2338        if test "x$RETVAL" = x0 ; then
2339            cat <<EOF
2340    *********************************************************************
2341    WARNING: the "profiles" package was enabled but tests failed to
2342      compile NetCDF applications.  Please check that:
2343    
2344      1) NetCDF is correctly installed for this compiler and
2345      2) the LIBS variable (within the "optfile") specifies the correct
2346           NetCDF library to link against.
2347    
2348      Due to this failure, the "profiles" package is now DISABLED.
2349    *********************************************************************
2350    EOF
2351            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2352            DISABLE="$DISABLE profiles"
2353        else
2354        #  this prevent to add profiles (due to pdepend rules) if not available
2355            DISABLE="$DISABLE profiles"
2356        fi
2357    fi
2358    
2359    #  Check for package RADTRANS: if LAPACK is not available,
2360    #  then issue a warning that the direct radtrans solver is not available.
2361    if test "x$HAVE_LAPACK" != xt ; then
2362        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2363        RETVAL=$?
2364        if test "x$RETVAL" = x0 ; then
2365            cat <<EOF
2366    *********************************************************************
2367    WARNING: the "radtrans" package was enabled but tests failed to
2368      compile LAPACK applications.  This means that the direct radtrans
2369      solver is not available and compilation will fail if it is enabled.
2370      If you want to use the direct solver, please check that:
2371    
2372      1) LAPACK is correctly installed for this compiler and
2373      2) the LIBS variable (within the "optfile") specifies the correct
2374         LAPACK library to link against.
2375    *********************************************************************
2376    EOF
2377        fi
2378    fi
2379    
2380    #  Make sure the openad package is enabled if using OpenAD
2381    if test "x$OPENAD" != x ; then
2382        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2383        RETVAL=$?
2384        if test "x$RETVAL" != x0 ; then
2385            cat <<EOF
2386    
2387    *********************************************************************
2388    ERROR: when generating an adjoint with OpenAD, the openad package
2389      must be enabled.  Please add it to packages.conf.
2390    *********************************************************************
2391    
2392    EOF
2393            exit 1
2394        fi
2395    fi
2396    
2397    if  test "x${PKG_DEPEND}" != x ; then
2398      echo "  applying package dependency rules"
2399      ck=
2400      while test "x$ck" != xtt ; do
2401      i=0      i=0
2402      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2403      rtot=$nname      rtot=$nname
2404      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2405    
2406          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2407          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1543  while test "x$ck" != xtt ; do Line 2413  while test "x$ck" != xtt ; do
2413                  pin="t"                  pin="t"
2414              fi              fi
2415          done          done
2416            #  or in the current $STANDARDDIRS list?
2417            for p in $STANDARDDIRS ; do
2418                if test "x$p" = "x$pname" ; then pin="t" ; fi
2419            done
2420    
2421          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2422          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1565  while test "x$ck" != xtt ; do Line 2439  while test "x$ck" != xtt ; do
2439    
2440          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2441          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2442                #echo "   " $pname ": need to add :" $dname
2443              in_dis="f"              in_dis="f"
2444              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2445                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1585  while test "x$ck" != xtt ; do Line 2460  while test "x$ck" != xtt ; do
2460          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2461          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2462              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2463              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2464              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2465              exit 1              exit 1
2466          fi          fi
2467          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2468          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2469      done      done
2470      ck=$ck"t"      ck=$ck"t"
2471  done    done
2472  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2473    fi
2474  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2475      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2476      if test -d $adr ; then      if test -d $adr ; then
# Line 1611  done Line 2487  done
2487    
2488  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2489  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2490  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2491  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2492  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2493  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2494  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1628  for n in $names ; do Line 2504  for n in $names ; do
2504              fi              fi
2505          done          done
2506          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2507              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2508              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2509          fi          fi
2510      fi      fi
2511  done  done
2512  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2513  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2514      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2515      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2516  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2517    
2518  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2519      case $i in      case $i in
2520          aim_v23)          aim_v23)
2521              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2522              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2523              ;;              ;;
2524      esac      esac
# Line 1650  for i in $PACKAGES ; do Line 2526  for i in $PACKAGES ; do
2526    
2527  done  done
2528    
2529  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2530  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2531  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2532      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2533          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1687  for i in $spaths ; do Line 2560  for i in $spaths ; do
2560      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2561          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2562          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2563          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2564          for n in $names ; do          for n in $names ; do
2565              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2566          done          done
2567      fi      fi
2568      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2569      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2570          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2571          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2572  #**** not yet enabled ****  #**** not yet enabled ****
2573  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2574  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1709  fi Line 2582  fi
2582    
2583  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2584  #  compiler.  #  compiler.
2585  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2586      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2587  fi  fi
2588  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2589    touch $TMP.adSrcFiles
2590  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2591      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2592      for j in $list_files ; do      for j in $list_files ; do
2593          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2594      done      done
2595  done  done
2596    if test ! "x"$FS = "x.f" ; then
2597        cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2598        mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2599    fi
2600    
2601  echo  echo
2602  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1730  for i in $INCLUDEDIRS ; do Line 2607  for i in $INCLUDEDIRS ; do
2607      fi      fi
2608  done  done
2609    
2610    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2611        if test ! "x$MPIINCLUDEDIR" = x ; then
2612            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2613            #   checking for additional included headers (in case of chain of included
2614            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2615            mpi_headers_do_local_copy
2616        fi
2617    fi
2618    
2619  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2620  rm -rf .links.tmp  rm -rf $TMP.links
2621  mkdir .links.tmp  mkdir $TMP.links
2622  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2623  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2624  printf 'SRCFILES = '    > srclist.inc      echo
2625  printf 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2626  printf 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2627  printf 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2628  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2629        echo "   sane such as:"
2630        echo
2631        echo "      umask 0002"
2632        echo
2633        echo "   and please verify that you have the proper permissions for"
2634        echo "   creating sub-directories and then reading files created"
2635        echo "   within them."
2636        echo
2637        exit 1
2638    fi
2639    rm -f $TMP.links/foo
2640    
2641    if test "x$OPENAD" != x ; then
2642        OAD_DONT_COMPILE="/dev/null"
2643        OAD_DONT_TRANSFORM="/dev/null"
2644        OAD_KEEP_ORIGINAL="/dev/null"
2645        OAD_CB2M_FILES="/dev/null"
2646        OADTOOLS="$TOOLSDIR/OAD_support"
2647        echo "  looking for dontCompile file:  "
2648        for i in "." $MODS ; do
2649            if test -r $i"/dontCompile" ; then
2650                OAD_DONT_COMPILE=$i"/dontCompile"
2651                echo "     found $OAD_DONT_COMPILE"
2652                break
2653            fi
2654        done
2655        echo "  looking for dontTransform file:  "
2656        for i in "." $MODS ; do
2657            if test -r $i"/dontTransform" ; then
2658                OAD_DONT_TRANSFORM=$i"/dontTransform"
2659                echo "     found $OAD_DONT_TRANSFORM"
2660                break
2661            fi
2662        done
2663        echo "  looking for keepOriginal file:  "
2664        for i in "." $MODS ; do
2665            if test -r $i"/keepOriginal" ; then
2666                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2667                echo "     found $OAD_KEEP_ORIGINAL"
2668                break
2669            fi
2670        done
2671        echo "  looking for cb2mFiles:  "
2672        for i in "." $MODS ; do
2673            if test -r $i"/cb2mFiles" ; then
2674                OAD_CB2M_FILES=$i"/cb2mFiles"
2675                echo "     found $OAD_CB2M_FILES"
2676                break
2677            fi
2678        done
2679        echo "   OpenAD exceptions:  "
2680    fi
2681    
2682    echo "# This section creates symbolic links" > $TMP.srclinks
2683    echo "" >> $TMP.srclinks
2684    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2685    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2686    printf 'C_SRC_FILES = '   > $TMP.csrclist
2687    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2688    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2689    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2690  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2691  for d in $alldirs ; do  for d in $alldirs ; do
2692      deplist=      deplist=
2693      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2694      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2695        if test "x$OPENAD" != x ; then
2696            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2697        fi
2698      for sf in $sfiles ; do      for sf in $sfiles ; do
2699          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2700              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2701                  case $d/$sf in                  ignore_f=f
2702                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2703                      ./$PACKAGES_DOT_H)
2704                            ignore_f=t
2705                            ;;
2706                      ./AD_CONFIG.h)
2707                            ignore_f=t
2708                          ;;                          ;;
2709                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2710                            ignore_f=t
2711                          ;;                          ;;
2712                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2713                            ignore_f=t
2714                          ;;                          ;;
2715                    ./BUILD_INFO.h)                    ./EMBEDDED_FILES.h)
2716                            ignore_f=t
2717                          ;;                          ;;
2718                    *)                    *)
2719                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2720                          deplist="$deplist $sf"                          #  ignore all soft-links
2721                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2722                                ignore_f=t
2723                            else
2724                                touch $TMP.links/$sf
2725                                deplist="$deplist $sf"
2726                            fi
2727                          ;;                          ;;
2728                  esac                  esac
2729                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2730                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2731                      F)                      case $extn in
2732                          echo    " \\"  >> srclist.inc                        F)
2733                          printf " $sf" >> srclist.inc                          echo    " \\"  >> $TMP.F77srclist
2734                            printf " $sf" >> $TMP.F77srclist
2735                            if test "x$OPENAD" = x ; then
2736                                basename=${sf%%.F}
2737                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2738                                if test -z "$isAD" ; then
2739                                    echo    " \\"  >> $TMP.nonADF77srclist
2740                                    printf " $sf" >> $TMP.nonADF77srclist
2741                                fi
2742                            else #- OpenAD case:
2743                                basename=${sf%%.F}
2744                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2745                                if test -z "$isAD" ; then
2746                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2747                                    if test -z "$toBeIgnored" ; then
2748                                        echo    " \\"  >> $TMP.nonADF77srclist
2749                                        printf " $sf" >> $TMP.nonADF77srclist
2750                                    else
2751                                        echo "    not to be compiled   :  $sf"
2752                                    fi
2753                                else # file is initially listed as an AD file we want to exclude it
2754                                     # or we want to retain the untransformed version
2755                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2756                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2757                                    if test -n "$notToBeTransformed"; then
2758                                        echo "    not to be transformed:  $sf"
2759                                    fi
2760                                    if test -n "$untransformedVersionToBeKept" ; then
2761                                        echo "    original to be kept  :  $sf"
2762                                    fi
2763                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2764                                        echo    " \\"  >> $TMP.nonADF77srclist
2765                                        printf " $sf" >> $TMP.nonADF77srclist
2766                                    fi
2767                                fi
2768                            fi
2769                          ;;                          ;;
2770                      F90)                      F90)
2771                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2772                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2773                          ;;                          ;;
2774                      c)                      c)
2775                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2776                          printf " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2777                          ;;                          ;;
2778                      h)                      h)
2779                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2780                          printf " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2781                          ;;                          ;;
2782                      flow)                      flow)
2783                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2784                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2785                          ;;                          ;;
2786                  esac                     esac
2787                    fi
2788              fi              fi
2789          fi          fi
2790      done      done
2791      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2792          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2793          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2794          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2795          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2796      fi  # We need to make sure that the link isn't already there.
2797    # This may happen when make thinks that a header file has to be "remade"
2798    # because a module it depends on has changed.  In this case we do nothing.
2799            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2800          fi
2801        fi
2802    done
2803    rm -rf $TMP.links
2804    echo "" >> $TMP.F77srclist
2805    echo "" >> $TMP.nonADF77srclist
2806    echo "" >> $TMP.csrclist
2807    echo "" >> $TMP.F90srclist
2808    echo "" >> $TMP.hsrclist
2809    echo "" >> $TMP.ad_flow_files
2810    
2811    CMDLINE=$0
2812    for xx in "$@" ; do nw=`echo $xx | wc -w`
2813        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2814                            else CMDLINE="$CMDLINE '$xx'" ; fi
2815  done  done
 rm -rf .links.tmp  
 echo "" >> srclist.inc  
 echo "" >> csrclist.inc  
 echo "" >> f90srclist.inc  
 echo "" >> hlist.inc  
 echo "" >> ad_flow_files.inc  
2816    
2817  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2818      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2819  fi  fi
2820  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2821  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1811  echo "#    $MACHINE" >> $MAKEFILE Line 2823  echo "#    $MACHINE" >> $MAKEFILE
2823  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2824  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2825  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2826  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2827  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2828  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2829    
# Line 1822  EXE_SVD=$EXECUTABLE"_svd" Line 2834  EXE_SVD=$EXECUTABLE"_svd"
2834  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2835  #  #
2836  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2837  #  #
2838  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2839  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2840  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1833  cat >>$MAKEFILE <<EOF Line 2845  cat >>$MAKEFILE <<EOF
2845  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2846  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2847  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2848  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2849  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2850  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1842  cat >>$MAKEFILE <<EOF Line 2852  cat >>$MAKEFILE <<EOF
2852  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2853    
2854  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2855  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2856  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2857  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2858  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2859  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2860  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2861    OADTOOLS    = ${OADTOOLS}
2862    
2863  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2864  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1860  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2871  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2871    
2872  # These files are created by Makefile  # These files are created by Makefile
2873  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2874  EOF  EOF
2875    
2876  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2877        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2878    else
2879        echo "EMBEDDED_FILES = " >>$MAKEFILE
2880    fi
2881    
2882    # extract default cpp search path so we can pass it to makedepend
2883    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2884    
2885  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2886  # Unix ln (link)  # Unix ln (link)
2887  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2888  # Dependency generator  # Dependency generator
2889  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2890  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1887  LINK = ${LINK} ${LDADD} Line 2902  LINK = ${LINK} ${LDADD}
2902  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2903  # Includes for CPP  # Includes for CPP
2904  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2905    # default CPP includes for makedepend
2906    CPPINCLUDES = ${CPPINCLUDES}
2907  # Flags for KPP  # Flags for KPP
2908  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2909  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2910  # Optim./debug for FC  # Optim./debug for FC
2911  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2912  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2913  # Optim./debug for FC  # Optim./debug for FC
2914  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2915  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2916    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2917  # Flags for CC  # Flags for CC
2918  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2919  # Files that should not be optimized  # Files that should not be optimized
2920  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2921  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2922  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2923  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2924  # Name of the Mekfile  # Name of the makefile
2925  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2926    # Name of the make program
2927    MAKE = ${MAKE}
2928    
2929  EOF  EOF
2930    
2931  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2932  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2933  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2934  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2935  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2936    cat $TMP.ad_flow_files   >> $MAKEFILE
2937    
2938    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2939    
2940  echo >> $MAKEFILE  echo >> $MAKEFILE
2941  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2942  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2943  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2944    # hence the $FS and $FS90 here.
2945    # for fixed format f90 files we use ff90 or FF90 resp
2946    # but these are not expected to be the original source files
2947    
2948    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2949    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2950    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2951    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2952  echo >> $MAKEFILE  echo >> $MAKEFILE
2953  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2954  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2955    
2956  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2957    
2958  all: \$(EXECUTABLE)  all: fwd_exe_target
2959  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2960            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2961            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2962            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2963            @-rm -f ad_config.template
2964            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2965    
2966    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2967          @echo Creating \$@ ...          @echo Creating \$@ ...
2968          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2969    
2970  depend:  depend:
2971          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2972          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2973          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2974          -rm -f makedepend.out          -rm -f makedepend.out
2975    
2976  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2977    
2978    libmitgcmuv.a: \$(OBJFILES)
2979            ar rcv libmitgcmuv.a \$(OBJFILES)
2980            ar d   libmitgcmuv.a main.o
2981    
2982    obj: \$(OBJFILES)
2983    
2984  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2985    
2986    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2987    
2988  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2989          @printf 'running ... '          @printf 'running ... '
2990          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2991    
2992    # remove most of the files that "make" generates
2993  clean:  clean:
2994          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2995            -rm -rf *.o
2996            -rm -rf *.$FS *.flowdir
2997            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2998    
2999    # remove most of the files that "make" and "make depend" generate
3000  Clean:  Clean:
3001          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3002          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3003          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3004          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3005    
3006    # remove also the executable, files that "genmake2" generates (except Makefile)
3007    #         and output from a run (plus log files from testreport)
3008  CLEAN:  CLEAN:
3009          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3010            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3011            -rm -f $LOGFILE genmake_state genmake_*optfile
3012            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3013            -rm -rf mpi_headers mnc_test_*
3014          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3015          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3016          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3017          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3018            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3019            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3020            -rm -f oad_cp.[0-9][0-9][0-9].?????
3021    
 #eh3 Makefile: makefile  
3022  makefile:  makefile:
3023          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3024  cleanlinks:  cleanlinks:
3025          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3026    
3027  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3028  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3029          @echo Creating \$@ ...          @echo Creating \$@ ...
3030          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3031  AD_CONFIG.h:  AD_CONFIG.h:
3032          @echo Creating \$@ ...          @echo Creating \$@ ...
3033          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3034  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3035          @echo Creating \$@ ...          @echo Creating \$@ ...
3036          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 1983  test ! "x$THISUSER" = x && echo "      -echo Line 3044  test ! "x$THISUSER" = x && echo "      -echo
3044  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3045  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3046    
3047    if test "x$EMBED_SRC" = xt ; then
3048        cat >>$MAKEFILE <<EOF
3049    
3050    decode_files.o : EMBEDDED_FILES.h
3051    
3052    ##  \$(F77_PP_SRC_FILES)
3053    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3054            @echo Creating \$@ ...
3055            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3056            -rm -f all_fF.tar.gz
3057            -gzip all_fF.tar
3058    
3059    EMBEDDED_FILES.h : all_fF.tar.gz
3060            @echo Creating \$@ ...
3061            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3062    
3063    EOF
3064    fi
3065    
3066  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3067    
3068  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 1990  cat >>$MAKEFILE <<EOF Line 3070  cat >>$MAKEFILE <<EOF
3070  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3071  ## %.o : %.F  ## %.o : %.F
3072    
3073    # C preprocessing and replacing the _d in constants:
3074    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3075    
3076  .F.$FS:  .F.$FS:
3077          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3078  .$FS.o:  .$FS.o:
3079          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3080    .F.o:
3081            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3082  .F90.$FS90:  .F90.$FS90:
3083          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3084    .FF90.f$FS90:
3085            \$(CPPCMD)  > \$@
3086  .$FS90.o:  .$FS90.o:
3087          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3088    .f$FS90.o:
3089            cp \$< \$(basename  \$<).f90
3090            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3091  .c.o:  .c.o:
3092          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3093    .flow.flowdir:
3094            \$(CPPCMD) > \$@
3095    
3096  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3097  .F.p:  .F.p:
3098          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3099  .p.$FS:  .p.$FS:
3100          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3101    
3102    EOF
3103    
3104  #=========================================  #=========================================
3105  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3106    #===  for TAMC/TAF  ======================
3107    
3108    if test "x$OPENAD" = x ; then
3109    
3110    cat >>$MAKEFILE <<EOF
3111    
3112  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3113  TAF            = ${TAF}  TAF            = ${TAF}
3114    
3115  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3116  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3117    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3118    
3119  EOF  EOF
3120    
# Line 2023  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3123  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3123  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3124  for i in $ad_vars ; do  for i in $ad_vars ; do
3125      name=$i      name=$i
3126      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3127      eval $t1      eval $t1
3128      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3129      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3130  done  done
3131    
3132  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3133  echo >> $MAKEFILE  echo >> $MAKEFILE
3134  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3135  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3136  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3137      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3138      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3139  done  done
3140  echo >> $MAKEFILE  echo >> $MAKEFILE
3141  rm -f ad_files  rm -f $TMP.adSrcFiles
3142    
3143  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3144    
3145  # ... AD ...  # ... AD ...
3146  adall: ad_taf  adall: ad_exe_target
3147  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3148  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3149    
3150    ad_exe_target:
3151            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3152            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3153            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3154            @-rm -f ad_config.template
3155            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3156    
3157  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3158          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3159          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3160          -rm -f ad_config.template          @-rm -f ad_config.template
3161          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3162          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3163          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3164    
3165  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3166          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          @-rm -f ad_input_code_ad.$FS ; echo ''
3167          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3168            ls -l ad_input_code_ad.$FS
3169            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3170    
3171  adtafonly:  adtafonly:
3172          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3173          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3174            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3175    
3176    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3177            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3178    
3179    ad_tamc_output.$FS: ad_input_code.$FS
3180            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3181            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3182    
3183  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3184          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3185    
3186  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
3187          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3188    
3189  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
3190          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3191    
3192    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3193    
3194  # ... FTL ...  # ... FTL ...
3195  ftlall: ftl_taf  ftlall: ftl_exe_target
3196  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3197  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3198    
3199  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3200          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3201          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3202          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3203          @make \$(F77FILES)          @-rm -f ad_config.template
3204          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
   
 ftltafonly:  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3205    
3206  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3207          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3208            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3209            @-rm -f ad_config.template
3210            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3211            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3212            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3213    
3214    ftl_taf_output.$FS: ftl_input_code.$FS
3215            @-rm -f ftl_input_code_tl.$FS ; echo ''
3216            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3217            ls -l ftl_input_code_tl.$FS
3218            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3219    
3220  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3221          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3222          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_tl.$FS
3223            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3224    
3225    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3226            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3227    
3228    ftl_tamc_output.$FS: ftl_input_code.$FS
3229            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3230            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3231    
3232  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3233          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3234    
3235  # ... SVD ...  # ... SVD ...
3236  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3237  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3238            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3239    svdall: svd_touch svd_taf
3240    
3241  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3242          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3243    
3244            @echo "--->>> Only COMPILE svd code! <<<---"
3245            @echo "--->>> Assumes you previously <<<---"
3246            @echo "--->>> did make svdtaf        <<<---"
3247    
3248    svd_touch:
3249            @echo "--->>> Only COMPILE svd code! <<<---"
3250            @echo "--->>> Assumes you previously <<<---"
3251            @echo "--->>> did make svdtaf        <<<---"
3252            touch ad_taf_output.$FS ftl_taf_output.$FS
3253            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3254            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3255            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3256            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3257            @-rm -f ad_config.template
3258    
3259  #=========================================  EOF
3260    
3261    fi
3262    
3263    #===  for OpenAD  ========================
3264    
3265    if test "x$OPENAD" != x ; then
3266    
3267    # ============ begin OpenAD specific section ==============
3268    
3269    cat >>$MAKEFILE <<EOF
3270    
3271    # all the source files linked from the various locations:
3272    ALL_LINKED_FILES= \
3273    \$(F77_SRC_FILES) \
3274    \$(C_SRC_FILES) \
3275    \$(H_SRC_FILES) \
3276    \$(F90_SRC_FILES) \
3277    \$(SPECIAL_FILES)
3278    
3279    ifndef OPENADROOT
3280      \$(error "Error:  environment variable OPENADROOT not defined!")
3281    endif
3282    
3283    ifndef XAIFSCHEMAROOT
3284      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3285    endif
3286    
3287    ifndef XAIFBOOSTERROOT
3288      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3289    endif
3290    
3291    EOF
3292    
3293    echo "  Add the source list for common block to module conversion "
3294    echo >> $MAKEFILE
3295    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3296    for i in `cat ${OAD_CB2M_FILES}` ; do
3297      echo    " \\" >> $MAKEFILE
3298      printf " $i" >> $MAKEFILE
3299    done
3300    echo >> $MAKEFILE
3301    
3302    echo "  Add the source list for AD code generation"
3303    echo >> $MAKEFILE
3304    printf "AD_FILES = " >> $MAKEFILE
3305    for i in `cat ${OAD_CB2M_FILES}` ; do
3306      echo    " \\" >> $MAKEFILE
3307      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3308    done
3309    AD_FILES=`cat $TMP.adSrcFiles`
3310    for i in $AD_FILES ; do
3311      basename=${i%%.f}
3312      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3313      if test -z "$toBeIgnored" ; then
3314        echo    " \\" >> $MAKEFILE
3315        printf " $i" >> $MAKEFILE
3316      fi
3317    done
3318    echo >> $MAKEFILE
3319    rm -f $TMP.adSrcFiles
3320    
3321    cat >>$MAKEFILE <<EOF
3322    
3323    adAll: \$(EXE_AD)
3324    .PHONY: adAll
3325    
3326    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3327    
3328    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3329    
3330    .PHONY: adDepend
3331    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3332            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3333            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3334            -rm -f makedepend.out
3335    
3336    OPENAD_SUPPORT_F90_SRC_FILES = \
3337    w2f__types.F90 \
3338    OAD_active.F90 \
3339    OAD_cp.F90 \
3340    OAD_rev.F90 \
3341    OAD_tape.F90 \
3342    revolve.F90
3343    
3344    OPENAD_SUPPORT_C_SRC_FILES = \
3345    iaddr.c \
3346    timeRatio.c
3347    
3348    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3349            cat \$^ > \$@
3350    
3351    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3352            cat \$^ > \$@
3353    
3354    f95_test.out: f95_test_mods.f90 f95_test.f90
3355            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3356            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3357    
3358    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3359    
3360    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3361    
3362    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3363    
3364    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3365            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3366    
3367    # create sources files modules from header files containing common blocks
3368    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3369            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3370    
3371    # create new header files with USE statements for the new modules made above
3372    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3373            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3374    
3375    # change the include directives of everybody to refer to  the new header files with the USE statements
3376    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3377            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3378    
3379    # makefile debug rule
3380    small_f: \$(CB2M_F90_PP_SRC_FILES)
3381    .PHONY: small_f
3382    
3383    ad_output.txt: \$(EXE_AD)
3384            @printf 'linking data files ... '
3385            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3386            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3387            @printf 'running ... '
3388            @./\$(EXE_AD) > \$@
3389    
3390    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3391            cat \$^ > \$@
3392    
3393    # canonicalizer
3394    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3395            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3396    
3397    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3398    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3399            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3400    
3401    # F -> WHIRL
3402    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3403            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3404    
3405    # WHIRL -> XAIF
3406    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3407            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3408    
3409    # XAIF -> XAIF'
3410    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3411            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3412    
3413    # XAIF' -> WHIRL'
3414    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3415            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3416    
3417    # WHIRL' -> F'
3418    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3419            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3420    
3421    # insert template directives
3422    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3423            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3424    
3425    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3426    # postprocess F'
3427    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3428            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3429            # the target is a placeholder to trigger a single execution of the rule
3430            touch \$@
3431    # put this so make knows about the postprocessing output
3432    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3433    
3434    # link the XAIF schema files
3435    %.xsd:
3436            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3437    
3438    # link the support files:
3439    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3440            \$(LN) \${OADTOOLS}/\$@ .
3441    
3442    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3443    
3444    # ============ end OpenAD specific section ==============
3445    
3446  EOF  EOF
3447    
3448    fi
3449    
3450    #=========================================
3451    
3452  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3453      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3454  fi  fi
# Line 2144  for i in $NOOPTFILES ; do Line 3475  for i in $NOOPTFILES ; do
3475  done  done
3476    
3477  echo "  Add rules for links"  echo "  Add rules for links"
3478  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3479  rm -f srclinks.tmp  rm -f $TMP.srclinks
3480    
3481  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3482  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2153  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3484  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3484  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3485    
3486  # Create special header files  # Create special header files
3487  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3488  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3489      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3490  else  else
# Line 2167  else Line 3498  else
3498      fi      fi
3499  fi  fi
3500  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3501      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3502  fi  fi
3503    
   
3504  #  Write the "state" for future records  #  Write the "state" for future records
3505  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3506      printf "" > genmake_state      printf "" > genmake_state
3507      for i in $gm_state ; do      for i in $gm_state ; do
3508          t1="t2=\$$i"          t1="t2=\$$i"
3509          eval $t1          eval $t1
3510          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3511      done      done
3512  fi  fi

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