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revision 1.10 by adcroft, Fri Sep 26 18:47:59 2003 UTC revision 1.64 by edhill, Sun Jan 25 00:22:57 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            echo -n "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70        else
71            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
72        fi
73    }
74    
75  # Guess possible config options for this host  # Guess possible config options for this host
76  find_possible_configs()  {  find_possible_configs()  {
77    
78      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
79      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82      p_LN=      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85        echo "  The platform appears to be:  $PLATFORM"
86        
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
89      RETVAL=$?      RETVAL=$?
90      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
91          p_LN="ln -s"          LN="ln -s"
92        else
93            echo "Error: \"ln -s\" does not appear to work on this system!"
94            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
95            exit 1
96      fi      fi
97      rm -f test link      rm -f test link
98    
99      p_CPP=`which cpp`      if test "x$CPP" = x ; then
100                CPP="cpp -traditional -P"
101      RETVAL=$?      fi
102      if test "x${RETVAL}" = x0 ; then  
103          p_LN="ln -s"      # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111      fi      fi
     rm -f test link  
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
117          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
118            cat >> hello.f <<EOF
119          program hello
120          do i=1,3
121            print *, 'hello world : ', i
122          enddo
123          end
124    EOF
125            $c -o hello hello.f > /dev/null 2>&1
126          RETVAL=$?          RETVAL=$?
127          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          echo "  None found!!!"          cat 1>&2 <<EOF
134    
135    Error: No Fortran compilers were found in your path.  Please specify one using:
136    
137        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
138        2) a command-line option (eg. "-fc NAME"), or
139        3) the MITGCM_FC environment variable.
140    
141    EOF
142            exit 1
143      else      else
144          echo "  "$p_FC          echo "  The possible FORTRAN compilers found in your path are:"
145            echo "   "$p_FC
146            if test "x$FC" = x ; then
147                FC=`echo $p_FC | $AWK '{print $1}'`
148            fi
149      fi      fi
150    
151      # look for possible MPI libraries      for i in $p_FC ; do
152      mpi_libs=          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
153      mpi_fort=`which mpif77 2>/dev/null`          if test -r $p_OF ; then
154      RETVAL=$?              OPTFILE=$p_OF
155      if test "x${RETVAL}" = x0 ; then              echo "  The options file:  $p_OF"
156          cat >>test.f <<EOF              echo "    appears to match so we'll use it."
157        PROGRAM HELLO              break
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
 EOF  
         eval "$mpi_fort -showme test.f > out"  
         RETVAL=$?  
         if test "x${RETVAL}" = x0 ; then  
             a=`cat out`  
             for i in $a ; do  
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
158          fi          fi
159          rm -f test.f out      done
160        if test "x$OPTFILE" = x ; then
161            cat 1>&2 <<EOF
162    
163    Error: No options file was found in:  $ROOTDIR/tools/build_options/
164      that matches this platform ("$PLATFORM") and the compilers found in
165      your path.  Please specify an "optfile" using:
166    
167        1) the command line (eg. "-optfile=path/to/OPTFILE"), or
168        2) the MITGCM_OF environment variable.
169    
170      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
171    
172    EOF
173            exit 1
174      fi      fi
175        
176    #     # look for possible MPI libraries
177    #     mpi_libs=
178    #     mpi_fort=`which mpif77 2>/dev/null`
179    #     RETVAL=$?
180    #     if test "x${RETVAL}" = x0 ; then
181    #       cat >>test.f <<EOF
182    #       PROGRAM HELLO
183    #       DO 10, I=1,10
184    #       PRINT *,'Hello World'
185    #    10 CONTINUE
186    #       STOP
187    #       END
188    # EOF
189    #       eval "$mpi_fort -showme test.f > out"
190    #       RETVAL=$?
191    #       if test "x${RETVAL}" = x0 ; then
192    #           a=`cat out`
193    #           for i in $a ; do
194    #               case $i in
195    #                   -*)
196    #                       mpi_libs="$mpi_libs $i" ;;
197    #               esac
198    #           done
199    #           echo "The MPI libs appear to be:"
200    #           echo "  "$mpi_libs
201    #       fi
202    #       rm -f test.f out
203    #     fi
204    
205  }  }
206    
# Line 86  get_pdepend_list()  { Line 210  get_pdepend_list()  {
210      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
211      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 97  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
238      echo "    -makefile NAME | -mf NAME"  
239      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
242      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
243      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
246      echo "    -disable NAME | --disable NAME"  
247      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
248      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
249      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250      echo "    -noopt NAME | --noopt NAME"            many platforms, "gmake" is the preferred choice.
251      echo "      -noopt=NAME | --noopt=NAME"  
252  #    echo "    -cpp NAME | --cpp NAME"      -makefile NAME | -mf NAME
253  #    echo "      -cpp=NAME | --cpp=NAME"        --makefile=NAME | -mf=NAME
254      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Call the makefile "NAME".  The default is "Makefile".
255      echo "      -fc=NAME | --fc=NAME"  
256      echo "    -[no]ieee | --[no]ieee"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "    -[no]mpi | --[no]mpi"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -[no]jam | --[no]jam"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo            By default, genamke will try to find the location by
260      echo "  and NAME is a string such as:"            looking in parent directories (up to the 5th parent).
261      echo  
262      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            Here, "NAME" specifies a list of directories that are
265      echo            used for additional source code.  Files found in the
266      echo "  which, depending upon your shell, may need to be single-quoted"            "mods list" are given preference over files of the same
267      echo "  if it contains spaces, dashes, or other special characters."            name found elsewhere.
268    
269        -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
316  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
317  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
319  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
320  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
321  #eh3 set LINK       = $FC  EOF
322  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
323  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
324  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
325  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
326  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
327  #eh3 set KFLAGS1    = (  )  
328  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
329  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
332  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398    }
399    
400    
401    check_HAVE_CLOC()  {
402        get_fortran_c_namemangling
403        cat <<EOF > genmake_tc_1.c
404    $FC_NAMEMANGLE
405    #include <stdio.h>
406    #include <stdlib.h>
407    #include <unistd.h>
408    #include <assert.h>
409    #include <sys/time.h>
410    void FC_NAMEMANGLE(cloc) ( double *curtim )
411    {
412     struct timeval tv1;
413     gettimeofday(&tv1 , (void *)NULL );
414     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415     *curtim = *curtim/1.E6;
416    }
417    EOF
418        make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440    check_netcdf_libs()  {
441        cat <<EOF > genmake_tnc.F
442          program fgennc
443    #include "netcdf.inc"
444          integer iret, ncid, xid
445          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
446          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
447          iret = nf_def_dim(ncid, 'X', 11, xid)
448          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
449          iret = nf_close(ncid)
450          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
451          end
452    EOF
453        $CPP genmake_tnc.F > genmake_tnc.f  \
454            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
455        RET_COMPILE=$?
456        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
457        RETVAL=$?
458        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
459            HAVE_NETCDF=t
460        else
461            cat genmake_tnc.log >> genmake_warnings
462        fi
463        rm -f genmake_tnc*
464    }
465    
466    
467  #  Set defaults here  #  Set defaults here
468  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 171  LN= Line 472  LN=
472  S64=  S64=
473  KPP=  KPP=
474  FC=  FC=
475    CPP=
476  LINK=  LINK=
477    # DEFINES="-DWORDLENGTH=4"
478    DEFINES=
479  PACKAGES=  PACKAGES=
480  ENABLE=  ENABLE=
481  DISABLE=  DISABLE=
482  MAKEFILE=  MAKEFILE=
483  MAKEDEPEND=  MAKEDEPEND=
484  PDEPEND=  PDEPEND=
485  DUMPSTATE=f  DUMPSTATE=t
486  PDEFAULT=  PDEFAULT=
487  OPTFILE=  OPTFILE=
488  INCLUDES="-I."  INCLUDES="-I."
# Line 192  KPPFILES= Line 496  KPPFILES=
496  NOOPTFILES=  NOOPTFILES=
497  NOOPTFLAGS=  NOOPTFLAGS=
498    
499    # DEFINES checked by test compilation
500    HAVE_SYSTEM=
501    HAVE_FDATE=
502    FC_NAMEMANGLE=
503    HAVE_CLOC=
504    HAVE_NETCDF=
505    
506  MODS=  MODS=
507  TOOLSDIR=  TOOLSDIR=
508  SOURCEDIRS=  SOURCEDIRS=
509  INCLUDEDIRS=  INCLUDEDIRS=
510    STANDARDDIRS="USE_THE_DEFAULT"
511    
512  PWD=`pwd`  PWD=`pwd`
513  MAKE=make  MAKE=make
514    AWK=awk
515  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
516  THISCWD=`pwd`  THISCWD=`pwd`
517  THISDATE=`date`  THISDATE=`date`
# Line 206  MACHINE=`uname -a` Line 519  MACHINE=`uname -a`
519  EXECUTABLE=  EXECUTABLE=
520  EXEHOOK=  EXEHOOK=
521  EXEDIR=  EXEDIR=
522    PACKAGES_CONF=
523    IEEE=
524    if test "x$MITGCM_IEEE" != x ; then
525        IEEE=$MITGCM_IEEE
526    fi
527    
528    AUTODIFF_PKG_USED=f
529    AD_OPTFILE=
530    TAF=
531    AD_TAF_FLAGS=
532    FTL_TAF_FLAGS=
533    SVD_TAF_FLAGS=
534    TAF_EXTRA=
535    TAMC=
536    AD_TAMC_FLAGS=
537    FTL_TAF_FLAGS=
538    SVD_TAMC_FLAGS=
539    TAMC_EXTRA=
540    
541    
542  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
543  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
544  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
545    
546  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
547  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
548  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
549  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
550  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
551    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
552    
553  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
554    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
555    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
556    gm_s12="TAF_EXTRA TAMC_EXTRA"
557    
558    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
559    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
560    
561    cat <<EOF
562    
563    GENMAKE :
564    
565    A program for GENerating MAKEfiles for the MITgcm project.  For a
566    quick list of options, use "genmake -h" or for more detail see:
567    
568      http://mitgcm.org/devel_HOWTO/
569    
570    EOF
571    
 echo  
572  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
573  gm_local="./gm_local"  gm_local="genmake_local"
574    for i in . $MODS ; do
575        if test -r $i/$gm_local ; then
576            . $i/$gm_local
577            break
578        fi
579    done
580  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
581  if test -e $gm_local ; then  if test -e $gm_local ; then
582      echo "using $gm_local"      echo "using $gm_local"
583      source $gm_local      . $gm_local
584      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
585      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
586  else  else
# Line 244  fi Line 598  fi
598  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
599  #done  #done
600  #parse_options  #parse_options
   
601  ac_prev=  ac_prev=
602  for ac_option ; do  for ac_option ; do
603    
# Line 269  for ac_option ; do Line 622  for ac_option ; do
622          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
623              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
624                    
625            -adoptfile | --adoptfile | -adof | --adof)
626                ac_prev=AD_OPTFILE ;;
627            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
628                AD_OPTFILE=$ac_optarg ;;
629            
630          -pdepend | --pdepend)          -pdepend | --pdepend)
631              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
632          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 289  for ac_option ; do Line 647  for ac_option ; do
647          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
648              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
649                    
650          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
651              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
652          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
653              PLATFORM=$ac_optarg ;;              echo
654                usage
655                ;;
656                    
657          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
658              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 314  for ac_option ; do Line 674  for ac_option ; do
674          -enable=* | --enable=*)          -enable=* | --enable=*)
675              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
676                    
677          -noopt | --noopt)          -standarddirs | --standarddirs)
678              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
679          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
680              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
681            
682  #           -cpp | --cpp)  #           -cpp | --cpp)
683  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
684  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 330  for ac_option ; do Line 690  for ac_option ; do
690              FC=$ac_optarg ;;              FC=$ac_optarg ;;
691                    
692          -ieee | --ieee)          -ieee | --ieee)
693              IEEE=1 ;;              IEEE=true ;;
694          -noieee | --noieee)          -noieee | --noieee)
695              IEEE=0 ;;              IEEE= ;;
696                    
697          -mpi | --mpi)  #       -jam | --jam)
698              MPI=1 ;;  #           JAM=1 ;;
699          -nompi | --nompi)  #       -nojam | --nojam)
700              MPI=0 ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
701                    
702          -ds | --ds)          -ds | --ds)
703              DUMPSTATE=t ;;              DUMPSTATE=t ;;
704                    
705            -taf_extra | --taf_extra)
706                ac_prev=TAF_EXTRA ;;
707            -taf_extra=* | --taf_extra=*)
708                TAF_EXTRA=$ac_optarg ;;
709    
710            -tamc_extra | --tamc_extra)
711                ac_prev=TAMC_EXTRA ;;
712            -tamc_extra=* | --tamc_extra=*)
713                TAMC_EXTRA=$ac_optarg ;;
714    
715          -*)          -*)
716              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
717              usage              usage
# Line 361  for ac_option ; do Line 726  for ac_option ; do
726            
727  done  done
728    
729    if test -f ./.genmakerc ; then
730        echo
731        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
732        echo "  file.  This file format is no longer supported.  Please see:"
733        echo
734        echo "    http://mitgcm.org/devel_HOWTO/"
735        echo
736        echo "  for directions on how to setup and use the new \"genmake2\" input"
737        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
738        echo
739    fi
740    
741    if test "x${ROOTDIR}" = x ; then
742        if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
743            ROOTDIR=".."
744        else
745            for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
746                if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
747                    ROOTDIR=$d
748                    echo -n "Warning:  ROOTDIR was not specified but there appears to be"
749                    echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
750                    break
751                fi
752            done
753        fi
754    fi
755    if test "x${ROOTDIR}" = x ; then
756        echo "Error: Cannot determine ROOTDIR for MITgcm code."
757        echo "  Please specify a ROOTDIR using either an options "
758        echo "  file or a command-line option."
759        exit 1
760    fi
761    if test ! -d ${ROOTDIR} ; then
762        echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
763        exit 1
764    fi
765    
766  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
767  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
768      echo "Warning: no OPTFILE specified so we'll look for possible settings"      if test "x$MITGCM_OF" = x ; then
769      printf "\n===  Searching for possible settings for OPTFILE  ===\n"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
770      find_possible_configs          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
771  else          find_possible_configs
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
772      else      else
773          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then          OPTFILE=$MITGCM_OF
774              echo "    using OPTFILE=\"$OPTFILE\""      fi
775              source "$OPTFILE"  fi
776              RETVAL=$?  if test "x$OPTFILE" != xNONE ; then
777              if test "x$RETVAL" != x0 ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
778                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
779                  echo "--please check that variable syntax is bash-compatible"          . "$OPTFILE"
780                  exit 1          RETVAL=$?
781              fi          if test "x$RETVAL" != x0 ; then
782              if test "x$DUMPSTATE" != xf ; then              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
783                  cp -f $OPTFILE "gm_optfile"              echo "--please check that variable syntax is bash-compatible"
784              fi              exit 1
785          else          fi
786              echo "Error: can't read OPTFILE=\"$OPTFILE\""          if test "x$DUMPSTATE" != xf ; then
787                cp -f $OPTFILE "genmake_optfile"
788            fi
789        else
790            echo "Error: can't read OPTFILE=\"$OPTFILE\""
791            exit 1
792        fi
793    fi
794    
795    echo "  getting AD_OPTFILE information:  "
796    if test "x${AD_OPTFILE}" = x ; then
797        if test "x$MITGCM_AD_OF" = x ; then
798            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
799        else
800            AD_OPTFILE=$MITGCM_AD_OF
801        fi
802    fi
803    if test "x${AD_OPTFILE}" != xNONE ; then
804        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
805            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
806            . "$AD_OPTFILE"
807            RETVAL=$?
808            if test "x$RETVAL" != x0 ; then
809                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
810                echo "--please check that variable syntax is bash-compatible"
811              exit 1              exit 1
812          fi          fi
813            if test "x$DUMPSTATE" != xf ; then
814                cp -f $AD_OPTFILE "genmake_ad_optfile"
815            fi
816        else
817            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
818            exit 1
819      fi      fi
820  fi  fi
821    
822  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
823  #  and abort!  #  either set defaults or complain and abort!
824  if test "x$FC" = x ; then  if test "x$FC" = x ; then
825      cat <<EOF 1>&2      cat <<EOF 1>&2
826    
827  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
828    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
829    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
830    3) the "./gm_local" file    3) the "./genmake_local" file
831  EOF  EOF
832      exit 1      exit 1
833  fi  fi
834  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
835      LINK=$FC      LINK=$FC
836  fi  fi
837    if test "x$MAKE" = x ; then
838        MAKE="make"
839    fi
840  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
841        CPP=cpp
842    fi
843    #EH3 === UGLY ===
844    #  The following an ugly little hack to check for $CPP in /lib/ and it
845    #  should eventually be replaced with a more general function that
846    #  searches a combo of the user's path and a list of "usual suspects"
847    #  to find the correct location for binaries such as $CPP.
848    for i in " " "/lib/" ; do
849        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
850    done
851    #EH3 === UGLY ===
852    echo "#define A a" | $CPP > test_cpp 2>&1
853    RETVAL=$?
854    if test "x$RETVAL" != x0 ; then
855      cat <<EOF 1>&2      cat <<EOF 1>&2
856    
857  Error: no C pre-processor: please specify using one of the following:  Error: C pre-processor "$CPP" failed the test case: please specify using:
858    
859    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
860    2) the "./gm_local" file    2) the "./genmake_local" file
861      3) with the CPP environment variable
862    
863  EOF  EOF
864      exit 1      exit 1
865    else
866        rm -f test_cpp
867  fi  fi
868  if test "x$S64" = x ; then  if test "x$MAKEDEPEND" = x ; then
869        MAKEDEPEND=makedepend
870    fi
871    if test "x$LN" = x ; then
872        LN="ln -s"
873    fi
874    echo "test" > genmake_test_ln
875    $LN genmake_test_ln genmake_tlink
876    RETVAL=$?
877    if test "x$RETVAL" != x0 ; then
878      cat <<EOF 1>&2      cat <<EOF 1>&2
879    
880  Error: no C pre-processor: please specify using one of the following:  Error: The command "ln -s" failed -- please specify a working soft-link
881    1) within the options file ("S64=...") as specified by "-of=OPTFILE"    command in the optfile.
882    2) the "./gm_local" file  
883  EOF  EOF
884      exit 1      exit 1
885  fi  fi
886    rm -f genmake_test_ln genmake_tlink
887    
888    
889    printf "\n===  Checking system libraries  ===\n"
890    echo -n "  Do we have the system() command using $FC...  "
891    cat > genmake_tcomp.f <<EOF
892          program hello
893          call system('echo hi')
894          end
895    EOF
896    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
897    RETVAL=$?
898    if test "x$RETVAL" = x0 ; then
899        HAVE_SYSTEM=t
900        DEFINES="$DEFINES -DHAVE_SYSTEM"
901        echo "yes"
902    else
903        HAVE_SYSTEM=
904        echo "no"
905    fi
906    rm -f genmake_tcomp*
907    
908    echo -n "  Do we have the fdate() command using $FC...  "
909    cat > genmake_tcomp.f <<EOF
910          program hello
911          CHARACTER(128) string
912          string = ' '
913          call fdate( string )
914          print *, string
915          end
916    EOF
917    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
918    RETVAL=$?
919    if test "x$RETVAL" = x0 ; then
920        HAVE_FDATE=t
921        DEFINES="$DEFINES -DHAVE_FDATE"
922        echo "yes"
923    else
924        HAVE_FDATE=
925        echo "no"
926    fi
927    rm -f genmake_tcomp*
928    
929    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
930    check_HAVE_CLOC
931    if test "x$HAVE_CLOC" != x ; then
932        echo "yes"
933    else
934        echo "no"
935    fi
936    rm -f genmake_t*
937    
938    echo -n "  Can we create NetCDF-enabled binaries...  "
939    check_netcdf_libs
940    if test "x$HAVE_NETCDF" != x ; then
941        echo "yes"
942    else
943        echo "no"
944    fi
945    
946    
947  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 446  if test "x${PLATFORM}" = x ; then Line 966  if test "x${PLATFORM}" = x ; then
966      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
967  fi  fi
968    
 if test "x${ROOTDIR}" = x ; then  
     if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then  
         ROOTDIR=".."  
     else  
         for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do  
             if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then  
                 ROOTDIR=$d  
                 echo -n "Warning:  ROOTDIR was not specified but there appears to be"  
                 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."  
                 break  
             fi  
         done  
     fi  
 fi  
 if test "x${ROOTDIR}" = x ; then  
     echo "Error: Cannot determine ROOTDIR for MITgcm code."  
     echo "  Please specify a ROOTDIR using either an options "  
     echo "  file or a command-line option."  
     exit 1  
 fi  
 if test ! -d ${ROOTDIR} ; then  
     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"  
     exit 1  
 fi  
   
969  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
970      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
971          EXEDIR=../exe          EXEDIR=../exe
# Line 490  if test ! -d ${TOOLSDIR} ; then Line 985  if test ! -d ${TOOLSDIR} ; then
985      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
986      exit 1      exit 1
987  fi  fi
988    if test "x$S64" = x ; then
989        S64='$(TOOLSDIR)/set64bitConst.sh'
990    fi
991    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
992    
993  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
994    
# Line 498  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 997  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
997  #  they appear as regular source code  #  they appear as regular source code
998  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
999      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1000      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1001      RETVAL=$?      RETVAL=$?
1002      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1003          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1004      else      else
1005          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1006          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1007          exit 1          exit 1
1008      fi      fi
1009  fi  fi
1010    
1011    #same for exch2
1012    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1013        echo "  Making source files in exch2 from  templates"
1014        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1015        RETVAL=$?
1016        if test "x${RETVAL}" = x0 ; then
1017            rm -f make_exch2.errors
1018        else
1019            echo "Error: problem encountered while building source files in exch2:"
1020            cat make_exch2.errors 1>&2
1021            exit 1
1022        fi
1023    fi
1024    
1025  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1026  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1027      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 528  echo "  getting package dependency info Line 1041  echo "  getting package dependency info
1041  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1042  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1043  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1044      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1045      > ./.pd_tmp      > ./.pd_tmp
1046  RETVAL=$?  RETVAL=$?
1047  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1048      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1049      exit 1      exit 1
1050  fi  fi
1051  source ./.pd_tmp  . ./.pd_tmp
1052  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1053    
1054  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1055    #  file should eventually be added so that, for convenience, one can
1056    #  specify groups of packages using names like "ocean" and "atmosphere".
1057    echo "  checking default package list:  "
1058    if test "x${PDEFAULT}" = x ; then
1059        for i in "." $MODS ; do
1060            if test -r $i"/packages.conf" ; then
1061                    PDEFAULT=$i"/packages.conf"
1062                    break
1063            fi
1064        done
1065    fi
1066  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1067      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1068  fi  fi
1069  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1070      echo "default packages file disabled"      echo "    default packages file disabled"
1071  else  else
1072      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1073          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1074      else      else
1075          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1076          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1077          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1078          RETVAL=$?          RETVAL=$?
1079          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1080              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 561  else Line 1084  else
1084          for i in $def ; do          for i in $def ; do
1085              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1086          done          done
1087          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1088            expand_pkg_groups
1089            echo "    after group expansion packages are:  $PACKAGES"
1090      fi      fi
1091  fi  fi
1092    
# Line 580  for p in $PACKAGES ; do Line 1105  for p in $PACKAGES ; do
1105  done  done
1106  PACKAGES="$pack"  PACKAGES="$pack"
1107  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1108  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1109  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1110  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1111      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 671  for i in $PACKAGES ; do Line 1196  for i in $PACKAGES ; do
1196      if test -d $adr ; then      if test -d $adr ; then
1197          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1198          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1199            if test "x$i" = xautodiff ; then
1200                AUTODIFF_PKG_USED=t
1201            fi
1202      else      else
1203          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1204          exit 1          exit 1
1205      fi      fi
1206  done  done
1207    
1208  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1209  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1210  #  RETVAL=$?
1211  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1212  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1213  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1214  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1215  # i=0          rm -f make_mnc.errors
1216  # while test $i -lt "${#pkrm[@]}" ; do      else
1217  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1218  #     RETVAL=$?          cat make_mnc.errors 1>&2
1219  #     if test "x$RETVAL" = x1 ; then          exit 1
1220  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1221  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1222  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1223    
1224  echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  WARNING: the "mnc" package has been enabled but tests failed to
1225  CPP_OPTIONS=    compile and/or execute NetCDF applications.  Please check that:
1226  spaths="$MODS ./ $SOURCEDIRS"  
1227  for i in $spaths ; do    1) NetCDF is installed for your compiler and
1228      try="$i/CPP_OPTIONS.h"    2) the LIBS variable (within the 'optfile") specifies the correct
1229      #  echo -n "    trying $try : "         NetCDF library to link against.
1230      if test -f $try -a -r $try ; then    
1231          echo "    found CPP_OPTIONS=\"$try\""  EOF
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
1232      fi      fi
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
1233  fi  fi
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1234    
1235  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1236  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1237  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1238  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1239  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1240  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1241  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1242  all_pack=  all_pack=
1243    DISABLED_PACKAGES=
1244  for n in $names ; do  for n in $names ; do
1245      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1246          has_pack="f"          has_pack="f"
# Line 748  for n in $names ; do Line 1251  for n in $names ; do
1251              fi              fi
1252          done          done
1253          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1254              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1255              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1256          fi          fi
1257      fi      fi
1258  done  done
1259  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1260  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1261      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1262      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1263    #eh3 DEFINES="$DEFINES -D$def"
1264    
1265  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1266      case $i in      case $i in
1267          aim_v23)          aim_v23)
1268              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1269                echo "Warning: ALLOW_AIM is set to enable aim_v23."
1270              ;;              ;;
1271      esac      esac
1272  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1273    
1274  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1275    
1276  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1277  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1278  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1279  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
1280      adr="$ROOTDIR/$d/src"  fi
1281      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
1282          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
1283          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
1284          exit 1          if test ! -d $adr ; then
1285      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1286          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1287      fi              exit 1
1288      adr="$ROOTDIR/$d/inc"          else
1289      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
1290          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
1291          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
1292          exit 1          if test ! -d $adr ; then
1293      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1294          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1295                exit 1
1296            else
1297                INCLUDEDIRS="$INCLUDEDIRS $adr"
1298            fi
1299        done
1300    fi
1301    
1302    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1303    echo "    of \"#define \"-type statements that are no longer allowed:"
1304    CPP_OPTIONS=
1305    CPP_EEOPTIONS=
1306    spaths=". $INCLUDEDIRS"
1307    names=`ls -1 "$ROOTDIR/pkg"`
1308    for i in $spaths ; do
1309        try="$i/CPP_OPTIONS.h"
1310        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
1311            echo "    found CPP_OPTIONS=\"$try\""
1312            CPP_OPTIONS="$try"
1313            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1314            for n in $names ; do
1315                test_for_package_in_cpp_options $CPP_OPTIONS $n
1316            done
1317        fi
1318        try="$i/CPP_EEOPTIONS.h"
1319        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1320            echo "    found CPP_EEOPTIONS=\"$try\""
1321            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1322    #**** not yet enabled ****
1323    #        test_for_mpi_in_cpp_eeoptions $try
1324    #**** not yet enabled ****
1325            CPP_EEOPTIONS="$try"
1326      fi      fi
1327  done  done
1328    if test "x$CPP_OPTIONS" = x ; then
1329        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1330        exit 1
1331    fi
1332    
1333    #  Here, we build the list of files to be "run through" the adjoint
1334    #  compiler.
1335    if test -f ./ad_files ; then
1336        rm -f ./ad_files
1337    fi
1338    echo "  Creating the list of files for the adjoint compiler."
1339    for i in $SOURCEDIRS ; do
1340        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1341        for j in $list_files ; do
1342            cat $i/$j >> ad_files
1343        done
1344    done
1345    
1346    
1347  echo  echo
1348  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1349  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1350  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1351      if test -d $i ; then      if ! test -d $i ; then
1352          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1353      else  #   else
1354          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1355      fi      fi
1356  done  done
# Line 833  echo -n 'SRCFILES = '    > srclist.inc Line 1364  echo -n 'SRCFILES = '    > srclist.inc
1364  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1365  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1366  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1367    echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1368  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1369  for d in $alldirs ; do  for d in $alldirs ; do
1370      deplist=      deplist=
1371      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1372      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1373      for sf in $sfiles ; do      for sf in $sfiles ; do
1374          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1375              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1376                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1377                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1378                  deplist="$deplist $sf"                          ;;
1379                      ./AD_CONFIG.h)
1380                            ;;
1381                      ./FC_NAMEMANGLE.h)
1382                            ;;
1383                      *)
1384                            touch .links.tmp/$sf
1385                            deplist="$deplist $sf"
1386                            ;;
1387                    esac
1388                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1389                  case $extn in                  case $extn in
1390                      F)                      F)
1391                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 861  for d in $alldirs ; do Line 1403  for d in $alldirs ; do
1403                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1404                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1405                          ;;                          ;;
1406                        flow)
1407                            echo    " \\"  >> ad_flow_files.inc
1408                            echo -n " $sf" >> ad_flow_files.inc
1409                            ;;
1410                  esac                  esac
1411              fi              fi
1412          fi          fi
# Line 877  echo "" >> srclist.inc Line 1423  echo "" >> srclist.inc
1423  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1424  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1425  echo "" >> hlist.inc  echo "" >> hlist.inc
1426    echo "" >> ad_flow_files.inc
1427    
1428  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1429      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 890  echo "# by the command:" >> $MAKEFILE Line 1437  echo "# by the command:" >> $MAKEFILE
1437  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1438  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1439  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1440    
1441    EXE_AD=$EXECUTABLE"_ad"
1442    EXE_FTL=$EXECUTABLE"_ftl"
1443    EXE_SVD=$EXECUTABLE"_svd"
1444    
1445  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1446    #
1447    # OPTFILE="$OPTFILE"
1448  #  #
1449  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1450  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 918  EXEDIR      = ${EXEDIR} Line 1472  EXEDIR      = ${EXEDIR}
1472  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1473  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1474    
1475    #eh3  new defines for the adjoint work
1476    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1477    EXE_AD      = ${EXE_AD}
1478    EXE_FTL     = ${EXE_FTL}
1479    EXE_SVD     = ${EXE_SVD}
1480    
1481    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1482    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1483    
1484    # These files are created by Makefile
1485    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1486    
1487  EOF  EOF
1488    
1489  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 963  MAKEFILE=${MAKEFILE} Line 1529  MAKEFILE=${MAKEFILE}
1529    
1530  EOF  EOF
1531    
1532  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1533  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1534  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1535  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1536    cat ad_flow_files.inc >> $MAKEFILE
1537    echo               >> $MAKEFILE
1538  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1539  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1540  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1541    
1542  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1543    rm -f ad_flow_files.inc
1544    
1545  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1546    
# Line 979  cat >>$MAKEFILE <<EOF Line 1548  cat >>$MAKEFILE <<EOF
1548  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1549    
1550  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1551  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1552            @echo Creating \$@ ...
1553          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1554  depend:  depend:
1555          @make links          @make links
1556          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1557          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1558    
1559  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1560    
1561  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1562    
# Line 995  output.txt: \$(EXECUTABLE) Line 1565  output.txt: \$(EXECUTABLE)
1565          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1566    
1567  clean:  clean:
1568          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1569  Clean:  Clean:
1570          @make clean          @make clean
1571          @make cleanlinks          @make cleanlinks
1572          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1573            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1574  CLEAN:  CLEAN:
1575          @make Clean          @make Clean
1576          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1577          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1578          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1579          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1580    
1581    #eh3 Makefile: makefile
1582  makefile:  makefile:
1583          ${0} $@          $THIS_SCRIPT $@
1584  cleanlinks:  cleanlinks:
1585          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1586    
1587    # Special targets ($SPECIAL_FILES) which are create by make
1588    ${PACKAGES_DOT_H}:
1589            @echo Creating \$@ ...
1590            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1591    AD_CONFIG.h:
1592            @echo Creating \$@ ...
1593            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1594    FC_NAMEMANGLE.h:
1595            @echo Creating \$@ ...
1596            echo "$FC_NAMEMANGLE" > \$@
1597    
1598  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1599  .F.f:  .F.f:
1600          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1030  cleanlinks: Line 1613  cleanlinks:
1613  .p.f:  .p.f:
1614          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1615    
1616    #=========================================
1617    #===  Automatic Differentiation Rules  ===
1618    
1619    TAMC           = ${TAMC}
1620    TAF            = ${TAF}
1621    
1622    TAF_EXTRA      = ${TAF_EXTRA}
1623    TAMC_EXTRA     = ${TAMC_EXTRA}
1624    
1625    EOF
1626    
1627    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1628    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1629    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1630    for i in $ad_vars ; do
1631        name=$i
1632        t1="t2=\$"`echo $i`
1633        eval $t1
1634        printf "%-20s = " $name >> $MAKEFILE
1635        echo $t2 >> $MAKEFILE
1636    done
1637    
1638    echo "  Add the source list for AD code generation"
1639    echo >> $MAKEFILE
1640    echo -n "AD_FILES = " >> $MAKEFILE
1641    AD_FILES=`cat ad_files`
1642    for i in $AD_FILES ; do
1643        echo    " \\" >> $MAKEFILE
1644        echo -n " $i" >> $MAKEFILE
1645    done
1646    echo >> $MAKEFILE
1647    rm -f ad_files
1648    
1649    cat >>$MAKEFILE <<EOF
1650    
1651    # ... AD ...
1652    adall: ad_taf
1653    adtaf: ad_taf_output.f
1654    adtamc: ad_tamc_output.f
1655    
1656    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1657            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1658            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1659            -rm -f ad_config.template
1660            @make \$(F77FILES)
1661            @make \$(AD_FLOW_FILES)
1662            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1663    
1664    ad_taf_output.f: ad_input_code.f
1665            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1666            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1667    
1668    adtafonly:
1669            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1670            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1671    
1672    ad_taf: ad_taf_output.o \$(OBJFILES)
1673            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1674    
1675    ad_tamc_output.f: ad_input_code.f
1676            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1677            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1678    
1679    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1680            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1681    
1682    
1683    # ... FTL ...
1684    ftlall: ftl_taf
1685    ftltaf: ftl_taf_output.f
1686    ftltamc: ftl_tamc_output.f
1687    
1688    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1689            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1690            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1691            -rm -f ftl_config.template
1692            @make \$(F77FILES)
1693            @make \$(AD_FLOW_FILES)
1694            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1695    
1696    ftl_taf_output.f: ftl_input_code.f
1697            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1698            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1699    
1700    ftltafonly:
1701            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1702            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1703    
1704    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1705            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1706    
1707    ftl_tamc_output.f: ftl_input_code.f
1708            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1709            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1710    
1711    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1712            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1713    
1714    
1715    # ... SVD ...
1716    svdtaf: ad_taf_output.f ftl_taf_output.f
1717    svdall: svd_taf
1718    
1719    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1720            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1721    
1722    
1723    #=========================================
1724    
1725  EOF  EOF
1726    
1727  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1066  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1758  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1758    
1759  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1760    
1761    # Create special header files
1762    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1763    if test ! -f $PACKAGES_DOT_H ; then
1764        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1765    else
1766        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1767        RETVAL=$?
1768        if test "x$RETVAL" = x0 ; then
1769            rm -f $PACKAGES_DOT_H".tmp"
1770        else
1771            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1772            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1773        fi
1774    fi
1775    if test ! -f AD_CONFIG.h ; then
1776        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1777    fi
1778    
1779    
1780  #  Write the "state" for future records  #  Write the "state" for future records
1781  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1782      echo -n "" > gm_state      echo -n "" > genmake_state
1783      for i in $gm_state ; do      for i in $gm_state ; do
1784          t1="t2=\$$i"          t1="t2=\$$i"
1785          eval $t1          eval $t1
1786          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
1787      done      done
1788  fi  fi

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