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revision 1.1 by edhill, Sat Aug 16 14:01:08 2003 UTC revision 1.276 by jmc, Thu Jan 7 20:21:42 2016 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175      p_PLATFORM=`uname`"-"`uname -m`  EOF
176      echo "The platform appears to be:"  
177      echo "  "$p_PLATFORM      exit 1
178    }
179      p_LN=  
180      echo "test" > test  # Search for particular CPP #cmds associated with packages
181      ln -s ./test link  # usage: test_for_package_in_cpp_options CPP_file package_name
182    test_for_package_in_cpp_options() {
183        cpp_options=$1
184        pkg=$2
185        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187        test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188        test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
189    }
190    
191    # Search for particular CPP #cmds associated with MPI
192    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193    test_for_mpi_in_cpp_eeoptions() {
194        cpp_options=$1
195        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
197    }
198    
199    # Search for particular string in a file. Return 1 if detected, 0 if not
200    # usage: test_for_string_in_file file string
201    test_for_string_in_file() {
202        file=$1
203        strng=$2
204        grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          p_LN="ln -s"          printf "Error: In $file there is an illegal line: "
208            grep -i "$strng" $file
209            exit 99
210      fi      fi
211      rm -f test link      return 0
212    }
213    
214      p_CPP=`which cpp`  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
215        # the package list.
216    expand_pkg_groups() {
217        new_packages=
218        if test -r $PKG_GROUPS ; then
219            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220            cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221            matched=0
222            for i in $PACKAGES ; do
223                line=`grep "^ *$i" $TMP.p2`
224                RETVAL=$?
225                if test "x$RETVAL" = x0 ; then
226                    matched=1
227                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                    echo "    replacing \"$i\" with:$replace"
229                    new_packages="$new_packages $replace"
230                else
231                    new_packages="$new_packages $i"
232                fi
233            done
234            PACKAGES=$new_packages
235            rm -f $TMP.p[1,2]
236            return $matched
237        else
238            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
239        fi
240    }
241    
242    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
243    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
244    check_for_broken_Ff()  {
245        #  Do we have defaults for $FS and/or $FS90 ?
246        tfs=f
247        tfs9=f90
248        if test "x$FS" != x ; then
249            tfs="$FS"
250        fi
251        if test "x$FS90" != x ; then
252            tfs9="$FS90"
253        fi
254    
255        #  First check the ability to create a *.F/.f pair.
256        cat <<EOF >> genmake_hello.F
257          program hello
258          write(*,*) 'hi'
259          stop
260          end
261    EOF
262        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
263      RETVAL=$?      RETVAL=$?
264      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
265          p_LN="ln -s"          if test "x$FS" = x ; then
266                FS='for'
267                FS90='fr9'
268                check_for_broken_Ff
269            else
270                cat <<EOF 2>&1
271    ERROR: Your file system cannot distinguish between *.F and *.f files
272      (fails the "cp" test) and this program cannot find a suitable
273      replacement extension.  Please try a different build environment or
274      contact the <MITgcm-support@mitgcm.org> list for help.
275    
276    EOF
277                exit -1
278            fi
279            return
280      fi      fi
281      rm -f test link      rm -f genmake_hello.*
282    
283      # look for possible fortran compilers      #  Check the ability of ${MAKE} and ${LN} to use the current set
284      p_FC=      #  of extensions.
285      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      cat <<EOF >> genmake_hello.F
286          which $c > /dev/null 2>&1        program hello
287          write(*,*) 'hi'
288          stop
289          end
290    EOF
291        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
292        cat <<EOF >> $MAKEFILE
293    .SUFFIXES:
294    .SUFFIXES: .$tfs .F
295    .F.$tfs:
296            $LN \$< \$@
297    EOF
298        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299        RETVAL=$?
300        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301            if test "x$FS" = x ; then
302                FS='for'
303                FS90='fr9'
304                check_for_broken_Ff
305            else
306                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307                echo "       see simple makefile: '$MAKEFILE' (left here)"
308                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
312                exit -1
313                return
314            fi
315        fi
316        rm -f genmake_hello.* $MAKEFILE
317        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
318    
319        #  If we make it here, use the extensions
320        FS=$tfs
321        FS90=$tfs9
322        return
323    }
324    
325    look_for_makedepend()  {
326    
327        #  The "original" makedepend is part of the Imake system that is
328        #  most often distributed with XFree86 or with an XFree86 source
329        #  package.  As a result, many machines (eg. generic Linux) do not
330        #  have a system-default "makedepend" available.  For those
331        #  systems, we have two fall-back options:
332        #
333        #    1) a makedepend implementation shipped with the cyrus-imapd
334        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335        #    2) a local tools/xmakedepend shell script
336        #
337        #  So the choices are, in order:
338        #    1) use the user-specified program
339        #    2) use the local xmakedepend script (get all dependencies, but slower)
340        #    3) use a system-wide default
341        #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343        #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365        if test "x${MAKEDEPEND}" = x ; then
366            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367            #  echo 'MAKEFILE="'$MAKEFILE'"'
368            cat <<EOF >> $MAKEFILE
369    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370    #
371    #   Some "makedepend" implementations will die if they cannot
372    #   find a Makefile -- so this file is here to gives them an
373    #   empty one to find and parse.
374    EOF
375            cat <<EOF >> genmake_tc.f
376          program test
377          write(*,*) 'test'
378          stop
379          end
380    EOF
381            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382            RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390            test -f $MAKEFILE  &&  rm -f $MAKEFILE
391            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398                MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400            else
401                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                echo -n "    Try to build cyrus-makedepend ..."
403                #  Try to build the cyrus implementation
404                build_cyrus_makedepend
405                RETVAL=$?
406                if test "x$RETVAL" = x0 ; then
407                    echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414                fi
415            fi
416        fi
417    }
418    
419    build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422        rm -f ./genmake_cy_md
423        (
424            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425                &&  ./configure > /dev/null 2>&1  \
426                &&  $MAKE > /dev/null 2>&1
427            if test -x ./makedepend.exe ; then
428                $LN ./makedepend.exe ./makedepend
429            fi
430            ./makedepend ifparser.c > /dev/null 2>&1  \
431                &&  echo "true"
432        ) > ./genmake_cy_md
433        grep true ./genmake_cy_md > /dev/null 2>&1
434        RETVAL=$?
435        rm -f ./genmake_cy_md
436        if test "x$RETVAL" = x0 ; then
437            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439            return 0
440        else
441            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442            return 1
443        fi
444    }
445    
446    build_embed_encode()
447    {
448        printf "  building the embed-encode utility...  "
449        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451                echo
452                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453                echo
454                EMBED_SRC=f
455                return 1
456            fi
457            clist="cc gcc c89 $CC"
458            for ic in $clist ; do
459                comm="$ic -o encode_files encode_files.c"
460                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461                RETVAL=$?
462                if test "x$RETVAL" = x0 ; then
463                    echo "OK"
464                    return 0
465                fi
466            done
467            echo
468            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
469            echo "      so it has been disabled"
470            echo
471            EMBED_SRC=f
472            return 1
473        fi
474        echo "OK"
475    }
476    
477    #  look for possible C compilers
478    look_for_C_compilers() {
479        echo >> $LOGFILE
480        echo "running: look_for_C_compilers()" >> $LOGFILE
481        rm -f ./genmake_hello.c  ./genmake_hello
482        cat >> genmake_hello.c << EOF
483    #include <stdio.h>
484    int main(int argc, char **argv) {
485      printf("Hello!\n");
486      return 0;
487    }
488    EOF
489        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491        for c in $tmp ; do
492            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493            echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495          RETVAL=$?          RETVAL=$?
496          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
497              p_FC="$p_FC $c"              echo " $c test successful" >> $LOGFILE
498                p_CC="$p_CC $c"
499          fi          fi
500      done      done
501      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
502      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
503          echo "  None found!!!"          cat 1>&2 <<EOF
504    
505    Error: No C compilers were found in your path.  Please specify one using:
506    
507        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
508        2) the CC or MITGCM_CC environment variables.
509    
510    EOF
511            exit 1
512      else      else
513          echo "  "$p_FC          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
514            if test "x$CC" = x ; then
515                CC=`echo $p_CC | $AWK '{print $1}'`
516                echo "  Setting C compiler to: "$CC
517            fi
518      fi      fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522      # look for possible MPI libraries  # Guess possible config options for this host
523      mpi_libs=  find_possible_optfile()  {
524      mpi_fort=`which mpif77 2>/dev/null`  
525      RETVAL=$?      echo >> $LOGFILE
526      if test "x${RETVAL}" = x0 ; then      echo "running: find_possible_optfile()" >> $LOGFILE
527          cat >>test.f <<EOF      tmp1=`uname`"_"`uname -m`
528        PROGRAM HELLO      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        DO 10, I=1,10      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        PRINT *,'Hello World'      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531     10 CONTINUE      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        STOP      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        END      PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538        #================================================================
539        #  look for possible FORTRAN compilers
540        echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542        p_FC=
543        rm -f ./genmake_hello.f
544        cat >> genmake_hello.f <<EOF
545          program hello
546          do i=1,3
547            print *, 'hello world : ', i
548          enddo
549          end
550  EOF  EOF
551          eval "$mpi_fort -showme test.f > out"      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              a=`cat out`              echo " $f test successful" >> $LOGFILE
558              for i in $a ; do              p_FC="$p_FC $f"
559                  case $i in          fi
560                      -*)      done
561                          mpi_libs="$mpi_libs $i" ;;      rm -f ./genmake_hello.f ./genmake_hello
562                  esac      if test "x${p_FC}" = x ; then
563              done          cat 1>&2 <<EOF
564              echo "The MPI libs appear to be:"  
565              echo "  "$mpi_libs  Error: No Fortran compilers were found in your path.  Please specify one using:
566    
567        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
568        2) a command-line option (eg. "-fc NAME"), or
569        3) the FC or MITGCM_FC environment variables.
570    
571    EOF
572            exit 1
573        else
574            echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
575        fi
576    
577        #  Use the first of the compilers found in the current PATH
578        #  that has a correctly-named optfile
579        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
580            for i in $p_FC ; do
581                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582                if test -r $OPTFILE ; then
583                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                    break
585                fi
586            done
587        fi
588    
589        if test "x$OPTFILE" = x ; then
590            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591            if test ! -r $OPTFILE ; then
592                 echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
         rm -f test.f out  
594      fi      fi
595    
596        if test "x$OPTFILE" = x ; then
597            cat 1>&2 <<EOF
598    
599    Error: No options file was found in:  $ROOTDIR/tools/build_options/
600      that matches this platform ("$PLATFORM") and the compilers found in
601      your path.  Please specify an "optfile" using:
602    
603        1) the command line (eg. "-optfile=path/to/OPTFILE"), or
604        2) the MITGCM_OF environment variable.
605    
606      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
607    
608    EOF
609            exit 1
610        fi
611  }  }
612    
613  parse_options()  {  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614    #  checking for additional included headers (in case of chain of included header)
615      ac_prev=  mpi_headers_do_local_copy() {
616      for ac_option in "${OPTIONS[@]}" ; do  
617        dBug=0
618          # echo "ac_option = :$ac_option:"      rm -rf ./mpi_headers
619                if test -d $MPIINCLUDEDIR ; then
620          # If the previous option needs an argument, assign it.  
621          if test -n "$ac_prev"; then          #----- check for additional headers (chain of included headers)
622              eval "$ac_prev=\$ac_option"          echo -n '  Check MPI headers ... '
623              ac_prev=          listIni=$MPI_HEADER_FILES
624              continue          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625          fi          outp=$?
626                    #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627          ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628                    if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629          case $ac_option in  
630                        doCheck=1 ; list2copy='' ; list2check=$listIni
631              -help | --help | -h | --h)          while test $doCheck = 1 ; do
632                  usage ;;            newList=''
633                          for i in $list2check ; do
634              -nooptfile | --nooptfile)              if test -f $MPIINCLUDEDIR/$i ; then
635                  OPTFILE="NONE" ;;                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636              -optfile | --optfile | -of | --of)                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637                  ac_prev=optfile ;;                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638              -optfile=* | --optfile=* | -of=* | --of=*)                for j in $newInc ; do
639                  OPTFILE=$ac_optarg ;;                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                                outp=$?
641              -pdepend | --pdepend)                  if test $outp != 0 ; then
642                  ac_prev=pdepend ;;                    if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643              -pdepend=* | --pdepend=*)                    newList="$newList $j"
644                  PDEPEND=$ac_optarg ;;                  fi
645                              done
646              -pdefault | --pdefault)                if test $dBug = 1 ; then echo "" ; fi
647                  ac_prev=pdefault ;;              fi
648              -pdefault=* | --pdefault=*)            done
649                  PDEFAULT=$ac_optarg ;;            if test "x$newList" = x ; then doCheck=0
650                          else list2check=$newList ; list2copy="$list2copy $newList"
651              -makefile | -ma)            fi
652                  ac_prev=makefile ;;          done
653              --makefile=* | -ma=*)          list2copy="$MPI_HEADER_FILES $list2copy"
654                  MAKEFILE=$ac_optarg ;;          if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655                
656              -platform | --platform | -pl | --pl)          #----- create local mpi_headers dir if we have files to copy
657                  ac_prev=platform ;;          mkListInc=`echo $list2copy | wc -w`
658              -platform=* | --platform=* | -pl=* | --pl=*)          if test $mkListInc != 0 ; then
659                  PLATFORM=$ac_optarg ;;            echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              -rootdir | --rootdir | -rd | --rd)            INCLUDES="-I./mpi_headers $INCLUDES"
662                  ac_prev=rootdir ;;            mkListInc=1
663              -rootdir=* | --rootdir=* | -rd=* | --rd=*)          fi
664                  ROOTDIR=$ac_optarg ;;          if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665                
666              -mods | --mods | -mo | --mo)          #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667                  ac_prev=mods ;;          for i in $list2copy ; do
668              -mods=* | --mods=* | -mo=* | --mo=*)            if test -f $MPIINCLUDEDIR/$i ; then
669                  MODS=$ac_optarg ;;              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                            if test $i = 'mpif.h' ; then
671              -disable | --disable)                  perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                  ac_prev=disable ;;              fi
673              -disable=* | --disable=*)              if test $mkListInc = 2 ; then
674                  DISABLE=$ac_optarg ;;                  LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                            fi
676              -enable | --enable)              if test $mkListInc = 1 ; then
677                  ac_prev=enable ;;                  LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678              -enable=* | --enable=*)              fi
679                  ENABLE=$ac_optarg ;;            fi
680                        done
681              -noopt | --noopt)      else
682                  ac_prev=noopt ;;          echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683              -noopt=* | --noopt=*)          echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684                  NOOPT=$ac_optarg ;;  #       exit -1
685                    fi
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696      source ./.pd_tmp      RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701        . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
703    }
704    
705    #  Build a CPP macro to automate calling C routines from FORTRAN
706    get_fortran_c_namemangling()  {
707    
708        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709        if test ! "x$FC_NAMEMANGLE" = x ; then
710            return 0
711        fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714        default_nm="#define FC_NAMEMANGLE(X) X ## _"
715    
716        cat > genmake_test.c <<EOF
717    void tcall( char * string ) { tsub( string ); }
718    EOF
719        COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" != x0 ; then
724            FC_NAMEMANGLE=$default_nm
725            cat <<EOF>> $LOGFILE
726    
727     WARNING: C test compile fails
728     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730    EOF
731            return 1
732        fi
733        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
734        RETVAL=$?
735        if test "x$RETVAL" != x0 ; then
736            FC_NAMEMANGLE=$default_nm
737            cat <<EOF>> $LOGFILE
738    
739      echo -n "PNAME = "${}   WARNING: The "nm" command failed.
740     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742    EOF
743            return 1
744        fi
745        cat > genmake_tcomp.$FS <<EOF
746          subroutine tcall( string )
747          character*(*) string
748          call tsub( string )
749          end
750    EOF
751        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754        RETVAL=$?
755        if test "x$RETVAL" != x0 ; then
756            FC_NAMEMANGLE=$default_nm
757            cat <<EOF>> $LOGFILE
758    
759     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762    EOF
763            return 1
764        fi
765        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
766        RETVAL=$?
767        if test "x$RETVAL" != x0 ; then
768            FC_NAMEMANGLE=$default_nm
769            cat <<EOF>> $LOGFILE
770    
771     WARNING: The "nm" command failed.
772     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774    EOF
775            return 1
776        fi
777    
778        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
779        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
780        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
781        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
782    
783        nmangle="X"
784        if test "x$c_a" != "x$f_a" ; then
785            comm="echo x$f_a | sed -e 's|x$c_a||'"
786            a=`eval $comm`
787            nmangle="$a ## $nmangle"
788        fi
789        if test "x$c_b" != "x$f_b" ; then
790            comm="echo x$f_b | sed -e 's|x$c_b||'"
791            b=`eval $comm`
792            nmangle="$nmangle ## $b"
793        fi
794    
795        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
796    
797        #  cleanup the testing files
798        rm -f genmake_tcomp.* genmake_test.*
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801  }  }
802    
803    check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806        get_fortran_c_namemangling
807        cat <<EOF > genmake_tc_1.c
808    $FC_NAMEMANGLE
809    #include <stdio.h>
810    #include <stdlib.h>
811    #include <unistd.h>
812    #include <assert.h>
813    #include <sys/time.h>
814    void FC_NAMEMANGLE(cloc) ( double *curtim )
815    {
816     struct timeval tv1;
817     gettimeofday(&tv1 , (void *)NULL );
818     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
819     *curtim = *curtim/1.E6;
820    }
821    EOF
822        COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          REAL*8 wtime
829          external cloc
830          call cloc(wtime)
831          print *," HELLO WORLD", wtime
832          end
833    EOF
834        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837        RET_F=$?
838        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839        RETVAL=$?
840        if test "x$RETVAL" = x0 ; then
841            HAVE_CLOC=t
842        fi
843        rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845    }
846    
847  #  Explain usage  check_HAVE_SIGREG()  {
848  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
849      echo ""          return
850      echo "Usage: "$0" [OPTIONS]"      fi
851      echo "  where [OPTIONS] can be:"$'\n'      echo >> $LOGFILE
852      echo "    -help | --help | -h | --h"      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      echo "    -nooptfile | --nooptfile"      get_fortran_c_namemangling
854      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      cat <<EOF > genmake_tc_1.c
855      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  $FC_NAMEMANGLE
856      echo "    -pdepend NAME | --pdepend NAME"  #include <stdlib.h>
857      echo "      -pdepend=NAME | --pdepend=NAME"  #include <stdio.h>
858      echo "    -pdefault NAME | --pdefault NAME"  #include <signal.h>
859      echo "      -pdefault=NAME | --pdefault=NAME"  #include <errno.h>
860      echo "    -makefile NAME | -ma NAME"  #include <ucontext.h>
861      echo "      --makefile=NAME | -ma=NAME"  
862      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  int * ip;
863      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
864      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  static void killhandler(
865      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
866      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  {
867      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      *ip = *ip + 1;
868      echo "    -disable NAME | --disable NAME"      return;
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"$'\n'  
     echo "  and NAME is a string such as:"$'\n'  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"$'\n'  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
869  }  }
870    
871  # Dump all important state  void FC_NAMEMANGLE(sigreg) (int * aip)
872  dump_state()  {  {
873      fname=$1      struct sigaction s;
874      echo " " > $fname      ip = aip;
875      RETVAL=$?      s.sa_flags = SA_SIGINFO;
876      if test "x${RETVAL}" = x ; then      s.sa_sigaction = (void *)killhandler;
877          echo "Error: cannot write to $fname"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
878          exit 1          printf("Sigaction returned error = %d\n", errno);
879      fi          exit(0);
880      echo "makefile "$makefile > $fname      }
881        return;
882    }
883    EOF
884        COMM="$CC $CFLAGS -c genmake_tc_1.c"
885        echo $COMM >> $LOGFILE
886        $COMM >> $LOGFILE 2>&1
887        RET_C=$?
888        cat <<EOF > genmake_tc_2.$FS
889          program hello
890          integer anint
891          common /iv/ anint
892          external sigreg
893          call sigreg(anint)
894          end
895    EOF
896        cat genmake_tc_2.$FS >> $LOGFILE
897        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898        echo $COMM >> $LOGFILE
899        $COMM >> $LOGFILE 2>&1
900        RETVAL=$?
901        if test "x$RETVAL" = x0 ; then
902            HAVE_SIGREG=t
903        fi
904        rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906    }
907    
908    check_HAVE_SETRLSTK()  {
909        if test ! "x$HAVE_SETRLSTK" = x ; then
910            return
911        fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914        get_fortran_c_namemangling
915        cat <<EOF > genmake_tc_1.c
916    $FC_NAMEMANGLE
917    #include <sys/time.h>
918    #include <sys/resource.h>
919    #include <unistd.h>
920    void FC_NAMEMANGLE(setrlstk) ()
921    {
922        struct rlimit rls;
923        rls.rlim_cur = RLIM_INFINITY;
924        rls.rlim_max = RLIM_INFINITY;
925        setrlimit(RLIMIT_STACK, &rls);
926        return;
927    }
928    EOF
929        COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932        RET_C=$?
933        cat <<EOF > genmake_tc_2.$FS
934          program hello
935          external setrlstk
936          call setrlstk()
937          end
938    EOF
939        cat genmake_tc_2.$FS >> $LOGFILE
940        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941        echo $COMM >> $LOGFILE
942        $COMM >> $LOGFILE 2>&1
943        RETVAL=$?
944        if test "x$RETVAL" = x0 ; then
945            HAVE_SETRLSTK=t
946        fi
947        rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949    }
950    
951    check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954        get_fortran_c_namemangling
955        cat <<EOF > genmake_tc_1.c
956    $FC_NAMEMANGLE
957    #include <stdio.h>
958    #include <stdlib.h>
959    #include <unistd.h>
960    #include <sys/stat.h>
961    #include <sys/types.h>
962    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
963    {
964        char name[512];
965        struct stat astat;
966    
967        name[0] = 'a'; name[1] = '\0';
968        if (! stat(name, &astat))
969            *nbyte = (int)(astat.st_size);
970        else
971            *nbyte = -1;
972    }
973    EOF
974        COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977        RET_C=$?
978        cat <<EOF > genmake_tc_2.$FS
979          program hello
980          integer nbyte
981          call tfsize(nbyte)
982          print *," HELLO WORLD", nbyte
983          end
984    EOF
985        cat genmake_tc_2.$FS >> $LOGFILE
986        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987        echo $COMM >> $LOGFILE
988        $COMM >> genmake_tc.log 2>&1
989        RETVAL=$?
990        if test "x$RETVAL" = x0 ; then
991            HAVE_STAT=t
992        fi
993        rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995    }
996    
997    check_netcdf_libs()  {
998        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999            return
1000        fi
1001        echo >> $LOGFILE
1002        echo "running: check_netcdf_libs()" >> $LOGFILE
1003        cat <<EOF > genmake_tnc.F
1004          program fgennc
1005    #include "netcdf.inc"
1006    EOF
1007       #if test ! "x$MPI" = x ; then
1008       #    echo '#include "mpif.h"' >> genmake_tnc.F
1009       #fi
1010        cat <<EOF >> genmake_tnc.F
1011          integer iret, ncid, xid
1012          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1013          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014          iret = nf_def_dim(ncid, 'X', 11, xid)
1015          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1016          iret = nf_close(ncid)
1017          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018          end
1019    EOF
1020        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021        cat genmake_tnc.F >> genmake_tnc.log
1022        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023        RET_CPP=f
1024        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025        echo "$COMM" >> genmake_tnc.log
1026        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027        if test "x$RET_CPP" = xf ; then
1028            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029                >> genmake_tnc.log
1030            echo "    Please check that \$INCLUDES is properly set." \
1031                >> genmake_tnc.log
1032        fi
1033        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037        RET_COMPILE=$?
1038        cat genmake_tnc.log >> $LOGFILE
1039    
1040        #EH3  Remove test program execution for machines that either disallow
1041        #EH3  execution or cannot support it (eg. cross-compilers)
1042        #EH3
1043        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1044        #EH3 RETVAL=$?
1045        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1046    
1047        if test "x$RET_COMPILE" = x0 ; then
1048            HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050        else
1051            # try again with "-lnetcdf" added to the libs
1052            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059            RET_COMPILE=$?
1060            echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062            if test "x$RET_COMPILE" = x0 ; then
1063                LIBS="$LIBS -lnetcdf"
1064                HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083            fi
1084        fi
1085        rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087    }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188  }  }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230  #eh3 # This is the generic configuration.  ###############################################################################
1231  #eh3 set LN         = ( 'ln -s' )  #   Sequential part of script starts here
1232  #eh3 set CPP        = ( '/lib/cpp -P' )  ###############################################################################
 #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  
 #eh3 set KPP        = (  )  
 #eh3 set FC         = ( 'f77' )  
 #eh3 set LINK       = $FC  
 #eh3 set MAKEDEPEND = ( 'makedepend' )  
 #eh3 set INCLUDES   = ( -I. )  
 #eh3 set FFLAGS     = (  )  
 #eh3 set FOPTIM     = (  )  
 #eh3 set CFLAGS     = (  )  
 #eh3 set KFLAGS1    = (  )  
 #eh3 set KFLAGS2    = (  )  
 #eh3 set LIBS       = (  )  
 #eh3 set KPPFILES   = (  )  
 #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  
 #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )  
1233    
1234  #  Set defaults here  #  Set defaults here
1235    COMMANDL="$0 $@"
1236    
1237  PLATFORM=  PLATFORM=
1238  LN=  LN=
1239  S64=  S64=
1240  KPP=  KPP=
1241  FC=  #FC=
1242    #CC=gcc
1243    #CPP=
1244  LINK=  LINK=
1245    DEFINES=
1246  PACKAGES=  PACKAGES=
1247  ENABLE=  ENABLE=
1248  DISABLE=  DISABLE=
1249  MAKEFILE=  # MAKEFILE=
1250  MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  PDEFAULT=  PKG_GROUPS=
1253    DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES=-I.  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
1265    #LDADD=
1266  LIBS=  LIBS=
1267  KPPFILES=  KPPFILES=
1268  NOOPTFILES=  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270    MPI=
1271    MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275    TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284    HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289    # DEFINES checked by test compilation or command-line
1290    HAVE_SYSTEM=
1291    HAVE_FDATE=
1292    FC_NAMEMANGLE=
1293    HAVE_CLOC=
1294    # HAVE_SETRLSTK=
1295    HAVE_STAT=
1296    HAVE_NETCDF=
1297    HAVE_ETIME=
1298    IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
1304  SOURCEDIRS=  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306    STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311    G2ARGS=
1312    BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1316    EMBED_SRC=
1317    THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
1320    THISUSER=`echo $USER`
1321    THISVER=
1322  MACHINE=`uname -a`  MACHINE=`uname -a`
1323    EXECUTABLE=
1324  echo $'\n'"===  Processing options files and arguments  ==="  EXEHOOK=
1325  gm_local="./gm_local"  EXEDIR=
1326  echo -n "  getting local config information:  "  IEEE=
1327  if test -e $gm_local ; then  if test "x$MITGCM_IEEE" != x ; then
1328      echo "using $gm_local"      IEEE=$MITGCM_IEEE
     source $gm_local  
     echo "DISABLE=$DISABLE"$'\n'"ENABLE=$ENABLE"  
 else  
     echo "none found"  
1329  fi  fi
1330    FS=
1331    FS90=
1332    
1333  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  AUTODIFF_PKG_USED=f
1334  OPTIONS=()  OPENAD=
1335  n=0  AD_OPTFILE=
1336  for i ; do  CAT_SRC_FOR_TAF=1
1337     setvar="OPTIONS[$n]='$i'"  TAF=
1338     #  echo "  $setvar"  AD_TAF_FLAGS=
1339     eval "$setvar"  FTL_TAF_FLAGS=
1340     n=$(( $n + 1 ))  SVD_TAF_FLAGS=
1341  done  TAF_EXTRA=
1342  parse_options  TAMC=
1343    AD_TAMC_FLAGS=
1344    FTL_TAF_FLAGS=
1345    SVD_TAMC_FLAGS=
1346    TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353    #  The following state can be set directly by command-line switches
1354    gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355    gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358    #  The following state is not directly set by command-line switches
1359    gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360    gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361    gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362    gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365    #  The following are all related to adjoint/tangent-linear stuff
1366    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368    gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373    cat <<EOF
1374    
1375    GENMAKE :
1376    
1377    A program for GENerating MAKEfiles for the MITgcm project.
1378       For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380       http://mitgcm.org/public/docs.html
1381    
1382  echo "  getting OPTFILE information:  "  EOF
1383  if test "x${OPTFILE}" = x ; then  
1384      echo "Warning: no OPTFILE specified so we'll look for possible settings"  LOGFILE="genmake.log"
1385      echo $'\n'"===  Searching for possible settings for OPTFILE  ==="  #- clean-up previous genmake logfiles:
1386      find_possible_configs  rm -f genmake_state genmake_*optfile $LOGFILE
1387  else  
1388      if test "x$OPTFILE" = xNONE ; then  echo "===  Processing options files and arguments  ==="
1389          echo "    OPTFILE=NONE so we'll try to use default settings"  
1390      else  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1391          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  #parse_options
1392              echo "    using OPTFILE=\"$OPTFILE\""  ac_prev=
1393              source "$OPTFILE"  for ac_option in "$@" ; do
1394              RETVAL=$?  
1395              if test "x$RETVAL" != x0 ; then      G2ARGS="$G2ARGS \"$ac_option\""
1396                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
1397                  echo "--please check that variable syntax is bash-compatible"      # If the previous option needs an argument, assign it.
1398                  exit 1      if test -n "$ac_prev"; then
1399              fi          eval "$ac_prev=\$ac_option"
1400          else          ac_prev=
1401              echo "Error: can't read OPTFILE=\"$OPTFILE\""          continue
1402              exit 1      fi
1403          fi  
1404      fi      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405  fi  
1406        case $ac_option in
1407    
1408            -help | --help | -h | --h)
1409                usage ;;
1410    
1411            -nooptfile | --nooptfile)
1412                OPTFILE="NONE" ;;
1413            -optfile | --optfile | -of | --of)
1414                ac_prev=OPTFILE ;;
1415            -optfile=* | --optfile=* | -of=* | --of=*)
1416                OPTFILE=$ac_optarg ;;
1417    
1418            -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422            -adoptfile | --adoptfile | -adof | --adof)
1423                ac_prev=AD_OPTFILE ;;
1424            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425                AD_OPTFILE=$ac_optarg ;;
1426    
1427            -pdepend | --pdepend)
1428                ac_prev=PKG_DEPEND ;;
1429            -pdepend=* | --pdepend=*)
1430                PKG_DEPEND=$ac_optarg ;;
1431    
1432            -pgroups | --pgroups)
1433                ac_prev=PKG_GROUPS ;;
1434            -pgroups=* | --pgroups=*)
1435                PKG_GROUPS=$ac_optarg ;;
1436    
1437            -make | --make | -m | --m)
1438                ac_prev=MAKE ;;
1439            -make=* | --make=* | -m=* | --m=*)
1440                MAKE=$ac_optarg ;;
1441    
1442            -bash | --bash)
1443                ac_prev=BASH ;;
1444            -bash=* | --bash=*)
1445                BASH=$ac_optarg ;;
1446    
1447            -makedepend | --makedepend | -md | --md)
1448                ac_prev=MAKEDEPEND ;;
1449            -makedepend=* | --makedepend=* | -md=* | --md=*)
1450                MAKEDEPEND=$ac_optarg ;;
1451    
1452            -makefile | --makefile | -mf | --mf)
1453                ac_prev=MAKEFILE ;;
1454            -makefile=* | --makefile=* | -mf=* | --mf=*)
1455                MAKEFILE=$ac_optarg ;;
1456    
1457            -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458                echo "ERROR: The platform option has been removed.  Please specify"
1459                echo "  the build options using the \"optfile\" mechanism."
1460                echo
1461                usage
1462                ;;
1463    
1464            -rootdir | --rootdir | -rd | --rd)
1465                ac_prev=ROOTDIR ;;
1466            -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467                ROOTDIR=$ac_optarg ;;
1468    
1469            -mods | --mods | -mo | --mo)
1470                ac_prev=MODS ;;
1471            -mods=* | --mods=* | -mo=* | --mo=*)
1472                MODS=$ac_optarg ;;
1473    
1474            -disable | --disable)
1475                ac_prev=DISABLE ;;
1476            -disable=* | --disable=*)
1477                DISABLE=$ac_optarg ;;
1478    
1479            -enable | --enable)
1480                ac_prev=ENABLE ;;
1481            -enable=* | --enable=*)
1482                ENABLE=$ac_optarg ;;
1483    
1484            -standarddirs | --standarddirs)
1485                ac_prev=STANDARDDIRS ;;
1486            -standarddirs=* | --standarddirs=*)
1487                STANDARDDIRS=$ac_optarg ;;
1488    
1489    #           -cpp | --cpp)
1490    #               ac_prev=cpp ;;
1491    #           -cpp=* | --cpp=*)
1492    #               CPP=$ac_optarg ;;
1493    
1494            -cc | --cc)
1495                ac_prev=CC ;;
1496            -cc=* | --cc=*)
1497                CC=$ac_optarg ;;
1498    
1499            -fortran | --fortran | -fc | --fc)
1500                ac_prev=FC ;;
1501            -fc=* | --fc=*)
1502                FC=$ac_optarg ;;
1503    
1504            -fs | --fs)
1505                ac_prev=FS ;;
1506            -fs=* | --fs=*)
1507                FS=$ac_optarg ;;
1508    
1509            -fs90 | --fs90)
1510                ac_prev=FS90 ;;
1511            -fs90=* | --fs90=*)
1512                FS90=$ac_optarg ;;
1513    
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517            -ieee | --ieee)
1518                IEEE=true ;;
1519            -noieee | --noieee)
1520                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521            -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526            -ts | --ts)
1527                TS=true ;;
1528            -papis | --papis)
1529                PAPIS=true ;;
1530            -pcls | --pcls)
1531                PCLS=true ;;
1532            -foolad | --foolad)
1533                FOOLAD=true ;;
1534            -papi | --papi)
1535                PAPI=true ;;
1536            -pcl | --pcl)
1537                PCL=true ;;
1538            -hpmt | --hpmt)
1539                HPMT=true ;;
1540    
1541            -mpi | --mpi)
1542                MPI=true ;;
1543            -mpi=* | --mpi=*)
1544                MPIPATH=$ac_optarg
1545                MPI=true ;;
1546    
1547            -omp | --omp)
1548                OMP=true ;;
1549            -omp=* | --omp=*)
1550                OMPFLAG=$ac_optarg
1551                OMP=true ;;
1552    
1553            -ds | --ds)
1554                DUMPSTATE=t ;;
1555    
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561            -taf_extra | --taf_extra)
1562                ac_prev=TAF_EXTRA ;;
1563            -taf_extra=* | --taf_extra=*)
1564                TAF_EXTRA=$ac_optarg ;;
1565    
1566            -tamc_extra | --tamc_extra)
1567                ac_prev=TAMC_EXTRA ;;
1568            -tamc_extra=* | --tamc_extra=*)
1569                TAMC_EXTRA=$ac_optarg ;;
1570    
1571            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572                IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
1574            -es | --es | -embed-source | --embed-source)
1575                EMBED_SRC=t ;;
1576    
1577            -*)
1578                echo "Error: unrecognized option: "$ac_option
1579                usage
1580                ;;
1581    
1582            *)
1583                echo "Error: unrecognized argument: "$ac_option
1584                usage
1585                ;;
1586    
1587        esac
1588    
 echo $'\n'"===  Setting defaults  ==="  
 echo -n "  Adding MODS directories:  "  
 for d in $MODS ; do  
     if test ! -d $d ; then  
         echo $'\n\n'"Error: MODS directory \"$d\" not found!"  
         exit 1  
     else  
         echo -n " $d"  
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
     fi  
1589  done  done
 echo  
1590    
1591  if test "x$MAKEFILE" = x ; then  #TMP=./genmk_$$
1592      MAKEFILE="Makefile"  #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599  fi  fi
1600  if test "x${PLATFORM}" = x ; then  rm -f $TMP
1601      PLATFORM=$p_PLATFORM  #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611    if test -f ./.genmakerc ; then
1612        echo
1613        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614        echo "  file.  This file format is no longer supported.  For directions on"
1615        echo "  how to setup and use the new \"genmake2\" script, please see:"
1616        echo "    http://mitgcm.org/public/devel_HOWTO/"
1617        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618        echo "WARNING: ignore \"./.genmakerc\" and continue."
1619        echo
1620  fi  fi
1621    
1622    #  Find the MITgcm ${ROOTDIR}
1623  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1624      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1625        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1626          ROOTDIR=".."          ROOTDIR=".."
1627      else      else
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 414  if test ! -d ${ROOTDIR} ; then Line 1646  if test ! -d ${ROOTDIR} ; then
1646      exit 1      exit 1
1647  fi  fi
1648    
1649    #  Find the MITgcm ${THISVER}
1650    version_file="${ROOTDIR}/doc/tag-index"
1651    if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658    fi
1659    
1660    if test "x$MAKEFILE" = x ; then
1661        MAKEFILE="Makefile"
1662    fi
1663    
1664    echo "  getting OPTFILE information:"
1665    if test "x${OPTFILE}" = x ; then
1666        if test "x$MITGCM_OF" = x ; then
1667            echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669            find_possible_optfile
1670        else
1671            OPTFILE=$MITGCM_OF
1672        fi
1673    fi
1674    if test "x$OPTFILE" != xNONE ; then
1675        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1676            echo "    using OPTFILE=\"$OPTFILE\""
1677            . "$OPTFILE"
1678            RETVAL=$?
1679            if test "x$RETVAL" != x0 ; then
1680                printf "Error: failed to source OPTFILE \"$OPTFILE\""
1681                echo "--please check that variable syntax is bash-compatible"
1682                exit 1
1683            fi
1684            if test "x$DUMPSTATE" = xt ; then
1685                cp -f $OPTFILE "genmake_optfile"
1686            fi
1687        else
1688            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1689            exit 1
1690        fi
1691    fi
1692    
1693    echo "  getting AD_OPTFILE information:"
1694    if test "x${AD_OPTFILE}" = x ; then
1695        if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699        else
1700            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701        fi
1702    fi
1703    if test "x${AD_OPTFILE}" != xNONE ; then
1704        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1705            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1706            . "$AD_OPTFILE"
1707            RETVAL=$?
1708            if test "x$RETVAL" != x0 ; then
1709                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1710                echo "--please check that variable syntax is bash-compatible"
1711                exit 1
1712            fi
1713            if test "x$DUMPSTATE" = xt ; then
1714                cp -f $AD_OPTFILE "genmake_ad_optfile"
1715            fi
1716        else
1717            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1718            exit 1
1719        fi
1720    fi
1721    
1722    #====================================================================
1723    #  Set default values if not set by the optfile
1724    #
1725    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1726    #  either set defaults or complain and abort!
1727    if test ! "x$BASH" = x ; then
1728        # add a trailing space so that it works within the Makefile syntax (see below)
1729        BASH="$BASH "
1730    fi
1731    if test "x$FC" = x ; then
1732        cat <<EOF 1>&2
1733    
1734    Error: no Fortran compiler: please specify using one of the following:
1735      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1736      2) the "-fc=XXX" command-line option
1737      3) the "./genmake_local" file
1738    EOF
1739        exit 1
1740    fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755    if test "x$CC" = x ; then
1756        look_for_C_compilers
1757    fi
1758    
1759    if test "x$LINK" = x ; then
1760        LINK=$FC
1761    fi
1762    if test "x$MAKE" = x ; then
1763        MAKE="make"
1764    fi
1765    if test "x$CPP" = x ; then
1766        CPP="cpp -traditional -P"
1767    fi
1768    #EH3 === UGLY ===
1769    #  The following is an ugly little hack to check for $CPP in /lib/ and
1770    #  it should eventually be replaced with a more general function that
1771    #  searches a combo of the user's path and a list of "usual suspects"
1772    #  to find the correct location for binaries such as $CPP.
1773    for i in " " "/lib/" ; do
1774        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1775    done
1776    #EH3 === UGLY ===
1777    echo "#define A a" | $CPP > test_cpp 2>&1
1778    RETVAL=$?
1779    if test "x$RETVAL" != x0 ; then
1780        cat <<EOF 1>&2
1781    
1782    Error: C pre-processor "$CPP" failed the test case: please specify using:
1783    
1784      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1785      2) the "./genmake_local" file
1786      3) with the CPP environment variable
1787    
1788    EOF
1789        exit 1
1790    else
1791        rm -f test_cpp
1792    fi
1793    
1794    look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797    if test "x$LN" = x ; then
1798        LN="ln -s"
1799    fi
1800    echo "test" > genmake_test_ln
1801    $LN genmake_test_ln genmake_tlink
1802    RETVAL=$?
1803    if test "x$RETVAL" != x0 ; then
1804        cat <<EOF 1>&2
1805    
1806    Error: The command "$LN" failed -- please specify a working soft-link
1807      command in the optfile.
1808    
1809    EOF
1810        exit 1
1811    fi
1812    test -L genmake_tlink > /dev/null 2>&1
1813    RETVAL=$?
1814    if test "x$RETVAL" = x0 ; then
1815        HAVE_TEST_L=t
1816    fi
1817    rm -f genmake_test_ln genmake_tlink
1818    
1819    #  Check for broken *.F/*.f handling and fix if possible
1820    check_for_broken_Ff
1821    
1822    if test ! "x$MPI" = x ; then
1823          echo "  Turning on MPI cpp macros"
1824          DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838    fi
1839    
1840    if test ! "x$TS" = x ; then
1841          echo "  Turning on timing per timestep"
1842          if test ! "x$FOOLAD" = x ; then
1843                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844          else
1845                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846          fi
1847          PACKAGES="$PACKAGES showflops"
1848    fi
1849    if test ! "x$PAPIS" = x ; then
1850          echo "  Turning on PAPI flop summary per timestep"
1851          echo "  Please make sure PAPIINC, PAPILIB are defined"
1852          if test ! "x$FOOLAD" = x ; then
1853                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1854          else
1855                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1856          fi
1857          INCLUDES="$INCLUDES $PAPIINC"
1858          LIBS="$LIBS $PAPILIB"
1859          PACKAGES="$PACKAGES showflops"
1860    fi
1861    if test ! "x$PCLS" = x ; then
1862          echo "  Turning on PCL counter summary per timestep"
1863          echo "  Please make sure PCLINC, PCLLIB are defined"
1864          if test ! "x$FOOLAD" = x ; then
1865                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1866          else
1867                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1868          fi
1869          INCLUDES="$INCLUDES $PCLINC"
1870          LIBS="$LIBS $PCLLIB"
1871          PACKAGES="$PACKAGES showflops"
1872    fi
1873    if test ! "x$PAPI" = x ; then
1874          if test ! "x$PAPIS" = x ; then
1875              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1876              echo "  Sticking with PAPI flop summary per timestep!"
1877          else
1878              echo "  Turning on performance analysis with PAPI"
1879              echo "  Please make sure PAPIINC, PAPILIB are defined"
1880              DEFINES="$DEFINES -DUSE_PAPI"
1881              INCLUDES="$INCLUDES $PAPIINC"
1882              LIBS="$LIBS $PAPILIB"
1883          fi
1884    fi
1885    if test ! "x$PCL" = x ; then
1886          if test ! "x$PCLS" = x ; then
1887              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1888              echo "  Sticking with PCL flop summary per timestep!"
1889          else
1890              echo "  Turning on performance analysis with PCL"
1891              echo "  Please make sure PCLINC, PCLLIB are defined"
1892              DEFINES="$DEFINES -DUSE_PCL"
1893              INCLUDES="$INCLUDES $PCLINC"
1894              LIBS="$LIBS $PCLLIB"
1895          fi
1896    fi
1897    if test ! "x$HPMT" = x ; then
1898          if test ! "x$PAPI" = x ; then
1899              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900              echo "  Sticking with PAPI!"
1901          else
1902            if test ! "x$PCL" = x ; then
1903              echo "  PCL and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PCL!"
1905            else
1906              echo "  Turning on performance analysis with the HPM Toolkit"
1907              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908              DEFINES="$DEFINES -DUSE_LIBHPM"
1909              INCLUDES="$INCLUDES $HPMTINC"
1910              LIBS="$LIBS $HPMTLIB"
1911            fi
1912          fi
1913    fi
1914    if test ! "x$GSL" = x ; then
1915          echo "  Turning on use of GSL to control floating point calculations"
1916          echo "  Please make sure GSLINC, GSLLIB are defined"
1917          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1918          INCLUDES="$INCLUDES $GSLINC"
1919          LIBS="$LIBS $GSLLIB"
1920    fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925    fi
1926    
1927    printf "\n===  Checking system libraries  ===\n"
1928    printf "  Do we have the system() command using $FC...  "
1929    cat > genmake_tcomp.$FS <<EOF
1930          program hello
1931          call system('echo hi')
1932          end
1933    EOF
1934    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1935    RETVAL=$?
1936    if test "x$RETVAL" = x0 ; then
1937        HAVE_SYSTEM=t
1938        DEFINES="$DEFINES -DHAVE_SYSTEM"
1939        echo "yes"
1940    else
1941        HAVE_SYSTEM=
1942        echo "no"
1943    fi
1944    rm -f genmake_tcomp*
1945    
1946    printf "  Do we have the fdate() command using $FC...  "
1947    cat > genmake_tcomp.$FS <<EOF
1948          program hello
1949          CHARACTER*(128) string
1950          string = ' '
1951          call fdate( string )
1952          print *, string
1953          end
1954    EOF
1955    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1956    RETVAL=$?
1957    if test "x$RETVAL" = x0 ; then
1958        HAVE_FDATE=t
1959        DEFINES="$DEFINES -DHAVE_FDATE"
1960        echo "yes"
1961    else
1962        HAVE_FDATE=
1963        echo "no"
1964    fi
1965    rm -f genmake_tcomp*
1966    
1967    printf "  Do we have the etime() command using $FC... "
1968    cat > genmake_tcomp.$FS <<EOF
1969          program hello
1970          REAL*4 actual, tarray(2)
1971          actual = -999.
1972          call ETIME( tarray, actual )
1973          if ( actual.ge.0. ) then
1974            print *, 0, tarray, actual
1975          else
1976            print *, 1, tarray, actual
1977          endif
1978          end
1979    EOF
1980    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1981    RETVAL=$?
1982    if test "x$RETVAL" = x0 ; then
1983        echo -n 'c,'
1984        ./genmake_tcomp > genmake_tcomp.out 2>&1
1985        RETVAL=$?
1986    fi
1987    if test "x$RETVAL" = x0 ; then
1988        echo -n 'r:'
1989        RETVAL=`cat genmake_tcomp.out | $AWK '{print $1}'`
1990    fi
1991    if test "x$RETVAL" = x0 ; then
1992        HAVE_ETIME=t
1993        DEFINES="$DEFINES -DHAVE_ETIME"
1994        echo " yes"
1995    else
1996        HAVE_ETIME=
1997        echo " no"
1998    fi
1999    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2000    rm -f genmake_tcomp*
2001    
2002    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2003    check_HAVE_CLOC
2004    if test "x$HAVE_CLOC" != x ; then
2005        DEFINES="$DEFINES -DHAVE_CLOC"
2006        echo "yes"
2007    else
2008        echo "no"
2009        if test "x$EMBED_SRC" = xt ; then
2010            echo "    WARNING: you requested file embedding but it has"
2011            echo "      been disabled since C code cannot be called"
2012            EMBED_SRC=
2013        fi
2014    fi
2015    rm -f genmake_t*
2016    
2017    printf "  Can we unlimit the stack size using $FC...  "
2018    check_HAVE_SETRLSTK
2019    if test "x$HAVE_SETRLSTK" = xt ; then
2020        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2021        echo "yes"
2022    else
2023        echo "no"
2024    fi
2025    rm -f genmake_t*
2026    
2027    printf "  Can we register a signal handler using $FC...  "
2028    check_HAVE_SIGREG
2029    if test "x$HAVE_SIGREG" = xt ; then
2030        DEFINES="$DEFINES -DHAVE_SIGREG"
2031        echo "yes"
2032    else
2033        echo "no"
2034    fi
2035    rm -f genmake_t*
2036    
2037    printf "  Can we use stat() through C calls...  "
2038    check_HAVE_STAT
2039    if test "x$HAVE_STAT" != x ; then
2040        DEFINES="$DEFINES -DHAVE_STAT"
2041        echo "yes"
2042    else
2043        echo "no"
2044    fi
2045    rm -f genmake_t*
2046    
2047    printf "  Can we create NetCDF-enabled binaries...  "
2048    check_netcdf_libs
2049    if test "x$HAVE_NETCDF" != x ; then
2050        DEFINES="$DEFINES -DHAVE_NETCDF"
2051        echo "yes"
2052    else
2053        echo "no"
2054    fi
2055    
2056    printf "  Can we create LAPACK-enabled binaries...  "
2057    check_lapack_libs
2058    if test "x$HAVE_LAPACK" != x ; then
2059        DEFINES="$DEFINES -DHAVE_LAPACK"
2060        echo "yes"
2061    else
2062        echo "no"
2063    fi
2064    
2065    printf "  Can we call FLUSH intrinsic subroutine...  "
2066    check_HAVE_FLUSH
2067    if test "x$HAVE_FLUSH" = xt ; then
2068        DEFINES="$DEFINES -DHAVE_FLUSH"
2069        echo "yes"
2070    else
2071        echo "no"
2072    fi
2073    
2074    DEFINES="$DEFINES $IGNORE_TIME"
2075    if test "x$EMBED_SRC" = xt ; then
2076        build_embed_encode
2077    fi
2078    if test "x$EMBED_SRC" = xt ; then
2079        ENABLE="$ENABLE embed_files"
2080    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2081    fi
2082    
2083    printf "\n===  Setting defaults  ===\n"
2084    printf "  Adding MODS directories: "
2085    for d in $MODS ; do
2086        if test ! -d $d ; then
2087            echo
2088            echo "Error: MODS directory \"$d\" not found!"
2089            exit 1
2090        else
2091            printf "$d "
2092            SOURCEDIRS="$SOURCEDIRS $d"
2093            INCLUDEDIRS="$INCLUDEDIRS $d"
2094        fi
2095    done
2096    echo
2097    
2098    #if test "x${PLATFORM}" = x ; then
2099    #    PLATFORM=$p_PLATFORM
2100    #fi
2101    
2102  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2103      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2104        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2105          EXEDIR=../exe          EXEDIR=../exe
2106      else      else
2107          EXEDIR=.          EXEDIR=.
# Line 430  if test "x${TOOLSDIR}" = x ; then Line 2116  if test "x${TOOLSDIR}" = x ; then
2116      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2117  fi  fi
2118  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2119      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2120      exit 1      exit 1
2121  fi  fi
2122    if test "x$S64" = x ; then
2123        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2124        RETVAL=$?
2125        if test "x${RETVAL}" = x0 ; then
2126            S64='$(TOOLSDIR)/set64bitConst.sh'
2127        else
2128            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2129            RETVAL=$?
2130            if test "x${RETVAL}" = x0 ; then
2131                S64='$(TOOLSDIR)/set64bitConst.csh'
2132            else
2133                cat <<EOF
2134    
2135    ERROR: neither of the two default scripts:
2136    
2137        ${TOOLSDIR}/set64bitConst.sh
2138        ${TOOLSDIR}/set64bitConst.csh
2139    
2140      are working so please check paths or specify (with \$S64) a
2141      working version of this script.
2142    
2143    EOF
2144                exit 1
2145            fi
2146        fi
2147    fi
2148    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2149    
2150  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2151    
2152    #  Set Standard Code Directories:
2153    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2154        STANDARDDIRS="eesupp model"
2155    fi
2156    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2157    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2158    ckM=$?
2159    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2160    ckE=$?
2161    if test $ckM = 0 -a $ckE = 1 ; then
2162        STANDARDDIRS="$STANDARDDIRS eesupp"
2163    fi
2164    
2165  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2166  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2167  #  they appear as regular source code  #  they appear as regular source code
2168  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2169      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2170      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2171        ) > make_eesupp.errors 2>&1
2172      RETVAL=$?      RETVAL=$?
2173      if test "x${RETVAL}" == "x0" ; then      if test "x${RETVAL}" = x0 ; then
2174          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2175      else      else
2176          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2177          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2178          exit 1          exit 1
2179      fi      fi
2180  fi  fi
2181    
2182  echo $'\n'"===  Determining package settings  ==="  #same for pkg/exch2 and pkg/regrid
2183  if  test "x${PDEPEND}" = x ; then  for pdir in exch2 regrid ; do
2184        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2185            echo "  Making source files in pkg/${pdir} from templates"
2186            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2187            ) > make_${pdir}.errors 2>&1
2188            RETVAL=$?
2189            if test "x${RETVAL}" = x0 ; then
2190                rm -f make_${pdir}.errors
2191            else
2192                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2193                cat make_${pdir}.errors 1>&2
2194                exit 1
2195            fi
2196        fi
2197    done
2198    
2199    printf "\n===  Determining package settings  ===\n"
2200    if  test "x${PKG_DEPEND}" = x ; then
2201      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2202      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2203          PDEPEND=$tmp  fi
2204      else  if  test "x${PKG_DEPEND}" = x ; then
2205          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2206          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2207  else  else
2208      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2209          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2210          exit 1          exit 1
2211      fi      fi
2212        echo "  getting package dependency info from  $PKG_DEPEND"
2213    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2214        get_pdepend_list $PKG_DEPEND
2215  fi  fi
2216  echo "  getting package dependency info from  $PDEPEND"  
2217  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2218  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2219  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2220      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \  if test "x${PKG_GROUPS}" = x ; then
2221      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2222  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2223  if test ! "x${RETVAL}" = x0 ; then  fi
2224      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2225      exit 1          echo "Warning:  No package groups information was specified."
2226            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2227    else
2228        if test ! -r ${PKG_GROUPS} ; then
2229            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2230            exit 1
2231        fi
2232        echo "  getting package groups info from      $PKG_GROUPS"
2233  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2234    
2235  echo  -n "  checking default package list:  "  #  Search for packages to compile.
2236  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
2237      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
2238  fi  if test "x${PKG_LIST}" = x ; then
2239  if test "x${PDEFAULT}" = xNONE ; then      for i in "." $MODS ; do
2240      echo "default packages file disabled"          if test -r $i"/packages.conf" ; then
2241  else                  PKG_LIST=$i"/packages.conf"
2242      if test ! -r $PDEFAULT ; then                  break
2243          echo ""          fi
2244          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""      done
2245      else  fi
2246          echo "  using PDEFAULT=\"$PDEFAULT\""  if test "x${PKG_LIST}" = x ; then
2247          #  Strip the comments and add all the names      pkg_list='default_pkg_list'
2248          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`      if test "x${PKG_GROUPS}" = x ; then
2249            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2250            exit 1
2251        fi
2252    else
2253        if test ! -r $PKG_LIST ; then
2254            echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2255            exit 1
2256        else
2257            echo "    using PKG_LIST=\"$PKG_LIST\""
2258            #  Strip the comments and add all the names
2259            pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2260          RETVAL=$?          RETVAL=$?
2261          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2262              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2263              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2264              exit 1              exit 1
2265          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
2266      fi      fi
2267  fi  fi
2268    for i in $pkg_list ; do
2269        PACKAGES="$PACKAGES $i"
2270    done
2271    echo     "    before group expansion packages are:$PACKAGES"
2272    if test "x${PKG_GROUPS}" != x ; then
2273        RET=1
2274        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2275        echo "    after group expansion packages are: $PACKAGES"
2276    fi
2277    
2278  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2279    echo "" > $TMP.pack
2280    for i in $PACKAGES ; do
2281        echo $i >> $TMP.pack
2282    done
2283    for i in `grep  "-" $TMP.pack` ; do
2284        j=`echo $i | sed 's/[-]//'`
2285        DISABLE="$DISABLE $j"
2286    done
2287  pack=  pack=
2288  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2289      addit="t"      addit="t"
# Line 523  for p in $PACKAGES ; do Line 2298  for p in $PACKAGES ; do
2298  done  done
2299  PACKAGES="$pack"  PACKAGES="$pack"
2300  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2301  rm -f ./.tmp_pack  echo "" > $TMP.pack
2302  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2303    # Test if each explicitly referenced package exists
2304  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2305      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2306          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2307            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2308          exit 1          exit 1
2309      fi      fi
2310      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2311  done  done
2312  pack=`cat ./.tmp_pack | sort | uniq`  PACKAGES=
2313  rm -f ./.tmp_pack  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2314  PACKAGES=      PACKAGES="$PACKAGES $i"
2315  for i in $pack ; do  done
2316      PACKAGES="$PACKAGES $i"  rm -f $TMP.pack
2317  done  echo "    packages are: $PACKAGES"
2318  echo "    packages are:  $PACKAGES"  
2319    #  Check for package MNC: if NetCDF is available, then build the MNC
2320    #  template files ; otherwise, delete mnc from the list of packages.
2321    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2322    mnc_in=$?
2323    if test "x$HAVE_NETCDF" != xt ; then
2324        if test "x$mnc_in" = x0 ; then
2325            cat <<EOF
2326    *********************************************************************
2327    WARNING: the "mnc" package was enabled but tests failed to compile
2328      NetCDF applications.  Please check that:
2329    
2330      1) NetCDF is correctly installed for this compiler and
2331      2) the LIBS variable (within the "optfile") specifies the correct
2332           NetCDF library to link against.
2333    
2334      Due to this failure, the "mnc" package is now DISABLED.
2335    *********************************************************************
2336    EOF
2337            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2338            DISABLE="$DISABLE mnc"
2339        else
2340        #  this prevent to add mnc (due to pdepend rules) if not available
2341            DISABLE="$DISABLE mnc"
2342        fi
2343    else
2344        # we have NetCDF, we try to build MNC template files
2345        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2346        RETVAL=$?
2347        if test "x${RETVAL}" = x0 ; then
2348            rm -f make_mnc.errors
2349        else
2350            echo "Error: problem encountered while building source files in pkg/mnc:"
2351            cat make_mnc.errors 1>&2
2352            if test "x$mnc_in" = x0 ; then
2353                exit 1
2354            else
2355                DISABLE="$DISABLE mnc"
2356            fi
2357        fi
2358    fi
2359    
2360    #  Check for package PROFILES: if NetCDF is not available,
2361    #  then delete profiles from the list of available packages.
2362    if test "x$HAVE_NETCDF" != xt ; then
2363        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2364        RETVAL=$?
2365        if test "x$RETVAL" = x0 ; then
2366            cat <<EOF
2367    *********************************************************************
2368    WARNING: the "profiles" package was enabled but tests failed to
2369      compile NetCDF applications.  Please check that:
2370    
2371      1) NetCDF is correctly installed for this compiler and
2372      2) the LIBS variable (within the "optfile") specifies the correct
2373           NetCDF library to link against.
2374    
2375      Due to this failure, the "profiles" package is now DISABLED.
2376    *********************************************************************
2377    EOF
2378            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2379            DISABLE="$DISABLE profiles"
2380        else
2381        #  this prevent to add profiles (due to pdepend rules) if not available
2382            DISABLE="$DISABLE profiles"
2383        fi
2384    fi
2385    
2386    #  Make sure the openad package is enabled if using OpenAD
2387    if test "x$OPENAD" != x ; then
2388        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2389        RETVAL=$?
2390        if test "x$RETVAL" != x0 ; then
2391            cat <<EOF
2392    
2393    *********************************************************************
2394    ERROR: when generating an adjoint with OpenAD, the openad package
2395      must be enabled.  Please add it to packages.conf.
2396    *********************************************************************
2397    
2398    EOF
2399            exit 1
2400        fi
2401    fi
2402    
2403  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2404  ck=    echo "  applying package dependency rules"
2405  while test "x$ck" != xtt ; do    ck=
2406      while test "x$ck" != xtt ; do
2407      i=0      i=0
2408      rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2409      while test $i -lt $rtot ; do      rtot=$nname
2410        while test $i -le $rtot ; do
2411    
2412          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2413          pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
2414            tmp="pname=\"\$PNAME_$i\""
2415            eval $tmp
2416          pin="f"          pin="f"
2417          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2418              if test "x$p" = "x$pname" ; then              if test "x$p" = "x$pname" ; then
2419                  pin="t"                  pin="t"
2420              fi              fi
2421          done          done
2422            #  or in the current $STANDARDDIRS list?
2423            for p in $STANDARDDIRS ; do
2424                if test "x$p" = "x$pname" ; then pin="t" ; fi
2425            done
2426    
2427          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2428            tmp="dname=\"\$DNAME_$i\""
2429            eval $tmp
2430          plus="-"          plus="-"
2431          echo "${DNAME[$i]}" | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
2432          RETVAL=$?          RETVAL=$?
2433          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then
2434              plus="+"              plus="+"
2435          fi          fi
2436    
2437          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
2438          dname=`echo ${DNAME[$i]} | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[+-]//'`
2439          din="f"          din="f"
2440          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2441              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 575  while test "x$ck" != xtt ; do Line 2445  while test "x$ck" != xtt ; do
2445    
2446          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2447          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2448                #echo "   " $pname ": need to add :" $dname
2449              in_dis="f"              in_dis="f"
2450              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2451                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 595  while test "x$ck" != xtt ; do Line 2466  while test "x$ck" != xtt ; do
2466          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2467          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2468              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2469              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2470              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2471              exit 1              exit 1
2472          fi          fi
2473          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2474            #i=$(( $i + 1 ))
2475      done      done
2476      ck=$ck"t"      ck=$ck"t"
2477  done    done
2478  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2479    fi
2480  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2481      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2482      if test -d $adr ; then      if test -d $adr ; then
2483          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2484          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2485            if test "x$i" = xautodiff ; then
2486                AUTODIFF_PKG_USED=t
2487            fi
2488      else      else
2489          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2490          exit 1          exit 1
2491      fi      fi
2492  done  done
2493    
2494  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2495  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2496  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2497  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2498  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2499  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2500  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2501  all_pack=  all_pack=
2502    DISABLED_PACKAGES=
2503  for n in $names ; do  for n in $names ; do
2504      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2505          has_pack="f"          has_pack="f"
# Line 686  for n in $names ; do Line 2510  for n in $names ; do
2510              fi              fi
2511          done          done
2512          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2513              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2514              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2515          fi          fi
2516      fi      fi
2517  done  done
2518  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2519  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2520      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2521      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2522    #eh3 DEFINES="$DEFINES -D$def"
2523    
2524  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2525      case $i in      case $i in
2526          aim_v23)          aim_v23)
2527              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2528                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2529              ;;              ;;
2530      esac      esac
2531  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2532    
2533  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2534    
2535  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2536  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2537  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2538  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2539      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2540      if test ! -d $adr ; then          if test ! -d $adr ; then
2541          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2542          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2543          exit 1              exit 1
2544      else          else
2545          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2546            fi
2547            adr="$ROOTDIR/$d/inc"
2548            if test ! -d $adr ; then
2549                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2550                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2551                exit 1
2552            else
2553                INCLUDEDIRS="$INCLUDEDIRS $adr"
2554            fi
2555        done
2556    fi
2557    
2558    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2559    echo "    of \"#define \"-type statements that are no longer allowed:"
2560    CPP_OPTIONS=
2561    CPP_EEOPTIONS=
2562    spaths=". $INCLUDEDIRS"
2563    names=`ls -1 "$ROOTDIR/pkg"`
2564    for i in $spaths ; do
2565        try="$i/CPP_OPTIONS.h"
2566        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2567            echo "    found CPP_OPTIONS=\"$try\""
2568            CPP_OPTIONS="$try"
2569            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2570            for n in $names ; do
2571                test_for_package_in_cpp_options $CPP_OPTIONS $n
2572            done
2573      fi      fi
2574      adr="$ROOTDIR/$d/inc"      try="$i/CPP_EEOPTIONS.h"
2575      if test ! -d $adr ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2576          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          echo "    found CPP_EEOPTIONS=\"$try\""
2577          echo "  is correct and that you correctly specified the STANDARDDIRS option"          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2578          exit 1  #**** not yet enabled ****
2579      else  #        test_for_mpi_in_cpp_eeoptions $try
2580          INCLUDEDIRS="$INCLUDEDIRS $adr"  #**** not yet enabled ****
2581            CPP_EEOPTIONS="$try"
2582      fi      fi
2583  done  done
2584    if test "x$CPP_OPTIONS" = x ; then
2585        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2586        exit 1
2587    fi
2588    
2589    #  Here, we build the list of files to be "run through" the adjoint
2590    #  compiler.
2591    if test -f $TMP.adSrcFiles ; then
2592        rm -f $TMP.adSrcFiles
2593    fi
2594    echo "  Creating the list of files for the adjoint compiler."
2595    touch $TMP.adSrcFiles
2596    for i in $SOURCEDIRS ; do
2597        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2598        for j in $list_files ; do
2599            cat $i/$j >> $TMP.adSrcFiles
2600        done
2601    done
2602    if test ! "x"$FS = "x.f" ; then
2603        cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2604        mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2605    fi
2606    
2607  echo $'\n'"===  Creating the Makefile  ==="  echo
2608    echo "===  Creating the Makefile  ==="
2609  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2610  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2611      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2612          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2613      fi      fi
2614  done  done
2615    
2616    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2617        if test ! "x$MPIINCLUDEDIR" = x ; then
2618            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2619            #   checking for additional included headers (in case of chain of included
2620            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2621            mpi_headers_do_local_copy
2622        fi
2623    fi
2624    
2625  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2626  rm -rf .links.tmp  rm -rf $TMP.links
2627  mkdir .links.tmp  mkdir $TMP.links
2628  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2629  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2630  echo -n 'SRCFILES = ' > srclist.inc      echo
2631  echo -n 'CSRCFILES = ' > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2632  echo -n 'HEADERFILES = ' > hlist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2633  alldirs=". $SOURCEDIRS $INCLUDEDIRS"      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2634        echo "   not working.  Please try setting your umask to something"
2635        echo "   sane such as:"
2636        echo
2637        echo "      umask 0002"
2638        echo
2639        echo "   and please verify that you have the proper permissions for"
2640        echo "   creating sub-directories and then reading files created"
2641        echo "   within them."
2642        echo
2643        exit 1
2644    fi
2645    rm -f $TMP.links/foo
2646    
2647    if test "x$OPENAD" != x ; then
2648        OAD_DONT_COMPILE="/dev/null"
2649        OAD_DONT_TRANSFORM="/dev/null"
2650        OAD_KEEP_ORIGINAL="/dev/null"
2651        OAD_CB2M_FILES="/dev/null"
2652        OADTOOLS="$TOOLSDIR/OAD_support"
2653        echo "  looking for dontCompile file:  "
2654        for i in "." $MODS $OADTOOLS ; do
2655            if test -r $i"/dontCompile" ; then
2656                OAD_DONT_COMPILE=$i"/dontCompile"
2657                echo "     found $OAD_DONT_COMPILE"
2658                break
2659            fi
2660        done
2661        echo "  looking for dontTransform file:  "
2662        for i in "." $MODS $OADTOOLS ; do
2663            if test -r $i"/dontTransform" ; then
2664                OAD_DONT_TRANSFORM=$i"/dontTransform"
2665                echo "     found $OAD_DONT_TRANSFORM"
2666                break
2667            fi
2668        done
2669        echo "  looking for keepOriginal file:  "
2670        for i in "." $MODS $OADTOOLS ; do
2671            if test -r $i"/keepOriginal" ; then
2672                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2673                echo "     found $OAD_KEEP_ORIGINAL"
2674                break
2675            fi
2676        done
2677        echo "  looking for cb2mFiles:  "
2678        for i in "." $MODS $OADTOOLS ; do
2679            if test -r $i"/cb2mFiles" ; then
2680                OAD_CB2M_FILES=$i"/cb2mFiles"
2681                echo "     found $OAD_CB2M_FILES"
2682                break
2683            fi
2684        done
2685        echo "   OpenAD exceptions:  "
2686    fi
2687    
2688    echo "# This section creates symbolic links" > $TMP.srclinks
2689    echo "" >> $TMP.srclinks
2690    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2691    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2692    printf 'C_SRC_FILES = '   > $TMP.csrclist
2693    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2694    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2695    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2696    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2697  for d in $alldirs ; do  for d in $alldirs ; do
2698      deplist=      deplist=
2699      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2700        sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2701        if test "x$OPENAD" != x ; then
2702            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2703        fi
2704      for sf in $sfiles ; do      for sf in $sfiles ; do
2705          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2706              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2707                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2708                  touch .links.tmp/$sf                  case $d/$sf in
2709                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2710                  case $extn in                          ignore_f=t
2711                      F)                          ;;
2712                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2713                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2714                            ;;
2715                      ./FC_NAMEMANGLE.h)
2716                            ignore_f=t
2717                            ;;
2718                      ./BUILD_INFO.h)
2719                            ignore_f=t
2720                            ;;
2721                      ./EMBEDDED_FILES.h)
2722                            ignore_f=t
2723                            ;;
2724                      *)
2725                            #  For the local directory *ONLY*,
2726                            #  ignore all soft-links
2727                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2728                                ignore_f=t
2729                            else
2730                                touch $TMP.links/$sf
2731                                deplist="$deplist $sf"
2732                            fi
2733                            ;;
2734                    esac
2735                    if test "x$ignore_f" = xf ; then
2736                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2737                        case $extn in
2738                          F)
2739                            echo    " \\"  >> $TMP.F77srclist
2740                            printf " $sf" >> $TMP.F77srclist
2741                            if test "x$OPENAD" = x ; then
2742                                basename=${sf%%.F}
2743                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2744                                if test -z "$isAD" ; then
2745                                    echo    " \\"  >> $TMP.nonADF77srclist
2746                                    printf " $sf" >> $TMP.nonADF77srclist
2747                                fi
2748                            else #- OpenAD case:
2749                                basename=${sf%%.F}
2750                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2751                                if test -z "$isAD" ; then
2752                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2753                                    if test -z "$toBeIgnored" ; then
2754                                        echo    " \\"  >> $TMP.nonADF77srclist
2755                                        printf " $sf" >> $TMP.nonADF77srclist
2756                                    else
2757                                        echo "    not to be compiled   :  $sf"
2758                                    fi
2759                                else # file is initially listed as an AD file we want to exclude it
2760                                     # or we want to retain the untransformed version
2761                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2762                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2763                                    if test -n "$notToBeTransformed"; then
2764                                        echo "    not to be transformed:  $sf"
2765                                    fi
2766                                    if test -n "$untransformedVersionToBeKept" ; then
2767                                        echo "    original to be kept  :  $sf"
2768                                    fi
2769                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2770                                        echo    " \\"  >> $TMP.nonADF77srclist
2771                                        printf " $sf" >> $TMP.nonADF77srclist
2772                                    fi
2773                                fi
2774                            fi
2775                            ;;
2776                        F90)
2777                            echo    " \\"  >> $TMP.F90srclist
2778                            printf " $sf" >> $TMP.F90srclist
2779                          ;;                          ;;
2780                      c)                      c)
2781                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2782                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2783                          ;;                          ;;
2784                      h)                      h)
2785                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2786                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2787                          ;;                          ;;
2788                  esac                      flow)
2789                            echo    " \\"  >> $TMP.ad_flow_files
2790                            printf " $sf" >> $TMP.ad_flow_files
2791                            ;;
2792                       esac
2793                    fi
2794              fi              fi
2795          fi          fi
2796      done      done
2797      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2798          echo $'\n'"#  These files are linked from $d" >> srclinks.tmp        if test "$d" != "." ; then
2799          echo "$deplist :" >> srclinks.tmp          echo "" >> $TMP.srclinks
2800          echo $'\t$(LN) '$d'/$@ $@' >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2801            echo "$deplist :" >> $TMP.srclinks
2802    # We need to make sure that the link isn't already there.
2803    # This may happen when make thinks that a header file has to be "remade"
2804    # because a module it depends on has changed.  In this case we do nothing.
2805            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2806          fi
2807      fi      fi
2808  done  done
2809  rm -rf .links.tmp  rm -rf $TMP.links
2810  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2811  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2812  echo "" >> hlist.inc  echo "" >> $TMP.csrclist
2813    echo "" >> $TMP.F90srclist
2814    echo "" >> $TMP.hsrclist
2815    echo "" >> $TMP.ad_flow_files
2816    
2817    CMDLINE=$0
2818    for xx in "$@" ; do nw=`echo $xx | wc -w`
2819        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2820                            else CMDLINE="$CMDLINE '$xx'" ; fi
2821    done
2822    
2823  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2824      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2825  fi  fi
2826  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2827  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 816  echo "#    $MACHINE" >> $MAKEFILE Line 2829  echo "#    $MACHINE" >> $MAKEFILE
2829  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2830  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2831  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2832  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2833  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2834  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2835    
2836    EXE_AD=$EXECUTABLE"_ad"
2837    EXE_FTL=$EXECUTABLE"_ftl"
2838    EXE_SVD=$EXECUTABLE"_svd"
2839    
2840  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2841  #  #
2842    # OPTFILE="$OPTFILE"
2843    #
2844  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2845  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2846  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 831  cat >>$MAKEFILE <<EOF Line 2851  cat >>$MAKEFILE <<EOF
2851  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2852  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2853  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2854  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2855  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2856  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 840  cat >>$MAKEFILE <<EOF Line 2858  cat >>$MAKEFILE <<EOF
2858  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2859    
2860  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2861  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2862  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2863  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2864  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2865  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2866  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2867    OADTOOLS    = ${OADTOOLS}
2868    
2869    #eh3  new defines for the adjoint work
2870    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2871    EXE_AD      = ${EXE_AD}
2872    EXE_FTL     = ${EXE_FTL}
2873    EXE_SVD     = ${EXE_SVD}
2874    
2875    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2876    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2877    
2878    # These files are created by Makefile
2879    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2880  EOF  EOF
2881    
2882  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2883        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2884    else
2885        echo "EMBEDDED_FILES = " >>$MAKEFILE
2886    fi
2887    
2888    # extract default cpp search path so we can pass it to makedepend
2889    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2890    
2891  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2892  # Unix ln (link)  # Unix ln (link)
2893  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2894  # Dependency generator  # Dependency generator
2895  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2896  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
2897  KPP = ${KPP}  KPP = ${KPP}
2898  # Fortran compiler  # Fortran compiler
2899  FC = ${FC}  FC = ${FC}
2900    # Fortran compiler
2901    F90C = ${F90C}
2902    # C compiler
2903    CC = ${CC}
2904  # Link editor  # Link editor
2905  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2906    
2907  # Defines for CPP  # Defines for CPP
2908  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2909  # Includes for CPP  # Includes for CPP
2910  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2911    # default CPP includes for makedepend
2912    CPPINCLUDES = ${CPPINCLUDES}
2913  # Flags for KPP  # Flags for KPP
2914  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2915  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2916  # Optim./debug for FC  # Optim./debug for FC
2917  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
2918  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2919    # Optim./debug for FC
2920    F90FLAGS = ${F90FLAGS}
2921    F90OPTIM = ${F90OPTIM}
2922    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2923  # Flags for CC  # Flags for CC
2924  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2925  # Files that should not be optimized  # Files that should not be optimized
2926  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2927  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2928  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2929  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2930    # Name of the makefile
2931    MAKEFILE = ${MAKEFILE}
2932    # Name of the make program
2933    MAKE = ${MAKE}
2934    
2935  EOF  EOF
2936    
2937  cat srclist.inc  >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2938  cat csrclist.inc >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2939  cat hlist.inc >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2940  echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2941  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2942    cat $TMP.ad_flow_files   >> $MAKEFILE
2943  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp  
2944    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2945    
2946    echo >> $MAKEFILE
2947    
2948    # add definitions for preprocessed sources
2949    # and note that not all systems allow case sensitive extensions
2950    # hence the $FS and $FS90 here.
2951    # for fixed format f90 files we use ff90 or FF90 resp
2952    # but these are not expected to be the original source files
2953    
2954    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2955    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2956    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2957    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2958    echo >> $MAKEFILE
2959    echo '.SUFFIXES:' >> $MAKEFILE
2960    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2961    
2962  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2963    
2964  .SUFFIXES:  all: fwd_exe_target
2965  .SUFFIXES: .o .f .p .F .c  fwd_exe_target:
2966            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2967            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2968            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2969            @-rm -f ad_config.template
2970            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2971    
2972  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2973  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2974          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2975    
2976  depend:  depend:
2977          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2978          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2979            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2980            -rm -f makedepend.out
2981    
2982    lib: libmitgcmuv.a
2983    
2984  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES)  libmitgcmuv.a: \$(OBJFILES)
2985            ar rcv libmitgcmuv.a \$(OBJFILES)
2986            ar d   libmitgcmuv.a main.o
2987    
2988  small_f: \$(F77FILES)  obj: \$(OBJFILES)
2989    
2990  output.txt: \$(EXECUTABLE)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2991    
2992    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2993    
2994    # remove most of the files that "make" generates
2995  clean:  clean:
2996          -rm -rf *.o *.f *.p ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2997            -rm -rf *.o
2998            -rm -rf *.$FS *.flowdir
2999            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3000    
3001    # remove most of the files that "make" and "make depend" generate
3002  Clean:  Clean:
3003          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3004          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3005          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3006            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3007    
3008    # remove also the executable, files that "genmake2" generates (except Makefile)
3009    #         and output from a run (plus log files from testreport)
3010  CLEAN:  CLEAN:
3011          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3012            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3013            -rm -f $LOGFILE genmake_state genmake_*optfile
3014            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3015            -rm -rf mpi_headers mnc_test_*
3016          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3017          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3018          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3019          -rm -f \$(EXECUTABLE)          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3020            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3021            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3022            -rm -f oad_cp.[0-9][0-9][0-9].?????
3023    
3024  makefile:  makefile:
3025          ${0} $@          $THIS_SCRIPT $G2ARGS
3026  cleanlinks:  cleanlinks:
3027          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3028    
3029  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
3030  .F.f:  ${PACKAGES_DOT_H}:
3031          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3032  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3033    AD_CONFIG.h:
3034            @echo Creating \$@ ...
3035            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3036    FC_NAMEMANGLE.h:
3037            @echo Creating \$@ ...
3038            echo "$FC_NAMEMANGLE" > \$@
3039    
3040    BUILD_INFO.h:
3041            @echo Creating \$@ ...
3042    EOF
3043    
3044    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3045    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3046    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3047    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3048    
3049    if test "x$EMBED_SRC" = xt ; then
3050        cat >>$MAKEFILE <<EOF
3051    
3052    decode_files.o : EMBEDDED_FILES.h
3053    
3054    ##  \$(F77_PP_SRC_FILES)
3055    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3056            @echo Creating \$@ ...
3057            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3058            -rm -f all_fF.tar.gz
3059            -gzip all_fF.tar
3060    
3061    EMBEDDED_FILES.h : all_fF.tar.gz
3062            @echo Creating \$@ ...
3063            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3064    
3065    EOF
3066    fi
3067    
3068    cat >>$MAKEFILE <<EOF
3069    
3070    # The normal chain of rules is (  .F - .$FS - .o  )
3071    
3072    ## This nullifies any default implicit rules concerning these two file types:
3073    ## %.o : %.F
3074    
3075    # C preprocessing and replacing the _d in constants:
3076    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3077    
3078    .F.$FS:
3079            \$(CPPCMD)  > \$@
3080    .$FS.o:
3081            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3082    .F.o:
3083          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3084    .F90.$FS90:
3085            \$(CPPCMD)  > \$@
3086    .FF90.f$FS90:
3087            \$(CPPCMD)  > \$@
3088    .$FS90.o:
3089            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3090    .f$FS90.o:
3091            cp \$< \$(basename  \$<).f90
3092            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3093  .c.o:  .c.o:
3094          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3095    .flow.flowdir:
3096            \$(CPPCMD) > \$@
3097    
3098  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3099  .F.p:  .F.p:
3100          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3101  .p.f:  .p.$FS:
3102          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3103    
3104  EOF  EOF
3105    
3106    #=========================================
3107    #===  Automatic Differentiation Rules  ===
3108    #===  for TAMC/TAF  ======================
3109    
3110    if test "x$OPENAD" = x ; then
3111    
3112    cat >>$MAKEFILE <<EOF
3113    
3114    TAMC           = ${TAMC}
3115    TAF            = ${TAF}
3116    
3117    TAF_EXTRA      = ${TAF_EXTRA}
3118    TAMC_EXTRA     = ${TAMC_EXTRA}
3119    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3120    
3121    EOF
3122    
3123    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
3124    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
3125    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3126    for i in $ad_vars ; do
3127        name=$i
3128        t1="t2=\$"`echo "$i"`
3129        eval $t1
3130        printf "%-20s = " $name >> $MAKEFILE
3131        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3132    done
3133    
3134    echo "  Add the source list for AD code generation"
3135    echo >> $MAKEFILE
3136    printf "AD_FILES = " >> $MAKEFILE
3137    AD_FILES=`cat $TMP.adSrcFiles`
3138    for i in $AD_FILES ; do
3139        echo    " \\" >> $MAKEFILE
3140        printf " $i" >> $MAKEFILE
3141    done
3142    echo >> $MAKEFILE
3143    rm -f $TMP.adSrcFiles
3144    
3145    if test $CAT_SRC_FOR_TAF = 0 ; then
3146    cat >>$MAKEFILE <<EOF
3147    
3148    # ... Utilities ...
3149    remove_comments:
3150            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3151            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3152    adj_sed:
3153            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3154            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3155    ftl_sed:
3156            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3157            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3158    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3159    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3160    EOF
3161    fi
3162    
3163    cat >>$MAKEFILE <<EOF
3164    
3165    # ... AD ...
3166    adall: ad_exe_target
3167    adtaf: ad_taf_output.$FS
3168    adtamc: ad_tamc_output.$FS
3169    
3170    ad_exe_target:
3171            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3172            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3173            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3174            @-rm -f ad_config.template
3175            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3176    
3177    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3178            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3179            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3180            @-rm -f ad_config.template
3181            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3182            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3183            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3184    
3185    adtafonly:
3186            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3187            ls -l ad_input_code_ad.$FS
3188            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3189    
3190    EOF
3191    
3192    if test $CAT_SRC_FOR_TAF = 1 ; then
3193    cat >>$MAKEFILE <<EOF
3194    # ... send 1 file to TAF ...
3195    ad_taf_output.$FS: ad_input_code.$FS
3196            @-rm -f ad_input_code_ad.$FS ; echo ''
3197            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3198            ls -l ad_input_code_ad.$FS
3199            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3200    
3201    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3202            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3203    
3204    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3205    
3206    EOF
3207    
3208    else
3209    cat >>$MAKEFILE <<EOF
3210    # ... send multiple files to TAF ...
3211    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3212            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3213            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3214            @-rm -f ad_config.template
3215            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3216            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3217            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3218            \$(MAKE) -f \$(MAKEFILE) remove_comments
3219            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3220            \$(MAKE) -f \$(MAKEFILE) adj_sed
3221            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3222    
3223    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3224            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3225            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3226    
3227    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3228            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3229    
3230    EOF
3231    fi
3232    
3233    cat >>$MAKEFILE <<EOF
3234    adonlyfwd:
3235            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3236    
3237    adtrick:
3238            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3239    
3240    ad_tamc_output.$FS: ad_input_code.$FS
3241            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3242            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3243    
3244    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3245            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3246    
3247    # ... FTL ...
3248    ftlall: ftl_exe_target
3249    ftltaf: ftl_taf_output.$FS
3250    ftltamc: ftl_tamc_output.$FS
3251    
3252    ftl_exe_target:
3253            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3254            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3255            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3256            @-rm -f ad_config.template
3257            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3258    
3259    ftl_input_code.$FS: \$(AD_FILES)
3260            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3261            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3262            @-rm -f ad_config.template
3263            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3264            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3265            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3266    
3267    ftltafonly:
3268            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3269            ls -l ftl_input_code_tl.$FS
3270            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3271    
3272    EOF
3273    
3274    if test $CAT_SRC_FOR_TAF = 1 ; then
3275    cat >>$MAKEFILE <<EOF
3276    # ... send 1 file to TAF ...
3277    ftl_taf_output.$FS: ftl_input_code.$FS
3278            @-rm -f ftl_input_code_tl.$FS ; echo ''
3279            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3280            ls -l ftl_input_code_tl.$FS
3281            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3282    
3283    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3284            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3285    
3286    EOF
3287    
3288    else
3289    cat >>$MAKEFILE <<EOF
3290    # ... send multiple files to TAF ...
3291    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3292            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3293            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3294            @-rm -f ad_config.template
3295            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3296            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3297            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3298            \$(MAKE) -f \$(MAKEFILE) remove_comments
3299            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3300            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3301            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3302    
3303    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3304            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3305            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3306    
3307    EOF
3308    fi
3309    
3310    cat >>$MAKEFILE <<EOF
3311    ftl_tamc_output.$FS: ftl_input_code.$FS
3312            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3313            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3314    
3315    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3316            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3317    
3318    # ... SVD ...
3319    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3320            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3321            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3322    svdall: svd_touch svd_taf
3323    
3324    svd_taf: \$(OBJFILES)
3325            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3326    
3327            @echo "--->>> Only COMPILE svd code! <<<---"
3328            @echo "--->>> Assumes you previously <<<---"
3329            @echo "--->>> did make svdtaf        <<<---"
3330    
3331    svd_touch:
3332            @echo "--->>> Only COMPILE svd code! <<<---"
3333            @echo "--->>> Assumes you previously <<<---"
3334            @echo "--->>> did make svdtaf        <<<---"
3335            touch ad_taf_output.$FS ftl_taf_output.$FS
3336            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3337            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3338            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3339            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3340            @-rm -f ad_config.template
3341    
3342    EOF
3343    
3344    fi
3345    
3346    #===  for OpenAD  ========================
3347    
3348    if test "x$OPENAD" != x ; then
3349    
3350    # ============ begin OpenAD specific section ==============
3351    
3352    cat >>$MAKEFILE <<EOF
3353    # ... OpenAD ...
3354    
3355    # all the source files linked from the various locations:
3356    ALL_LINKED_FILES= \
3357    \$(F77_SRC_FILES) \
3358    \$(C_SRC_FILES) \
3359    \$(H_SRC_FILES) \
3360    \$(F90_SRC_FILES) \
3361    \$(SPECIAL_FILES)
3362    
3363    ifndef OPENADROOT
3364      \$(error "Error:  environment variable OPENADROOT not defined!")
3365    endif
3366    
3367    ifndef XAIFSCHEMAROOT
3368      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3369    endif
3370    
3371    ifndef XAIFBOOSTERROOT
3372      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3373    endif
3374    
3375    EOF
3376    
3377    echo "  Add the source list for common block to module conversion "
3378    echo >> $MAKEFILE
3379    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3380    for i in `cat ${OAD_CB2M_FILES}` ; do
3381      echo    " \\" >> $MAKEFILE
3382      printf " $i" >> $MAKEFILE
3383    done
3384    echo >> $MAKEFILE
3385    
3386    echo "  Add the source list for AD code generation"
3387    echo >> $MAKEFILE
3388    printf "AD_FILES = " >> $MAKEFILE
3389    for i in `cat ${OAD_CB2M_FILES}` ; do
3390      echo    " \\" >> $MAKEFILE
3391      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3392    done
3393    AD_FILES=`cat $TMP.adSrcFiles`
3394    for i in $AD_FILES ; do
3395      basename=${i%%.f}
3396      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3397      if test -z "$toBeIgnored" ; then
3398        echo    " \\" >> $MAKEFILE
3399        printf " $i" >> $MAKEFILE
3400      fi
3401    done
3402    echo >> $MAKEFILE
3403    rm -f $TMP.adSrcFiles
3404    
3405    cat >>$MAKEFILE <<EOF
3406    
3407    adAll: ad_exe_target
3408    .PHONY: adAll
3409    
3410    ad_exe_target:
3411            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3412            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3413            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3414            @-rm -f ad_config.template
3415            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3416    
3417    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3418    
3419    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3420    
3421    .PHONY: adDepend
3422    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3423            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3424            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3425            -rm -f makedepend.out
3426    
3427    OPENAD_SUPPORT_F90_SRC_FILES = \
3428    w2f__types.F90 \
3429    OAD_active.F90 \
3430    OAD_cp.F90 \
3431    OAD_rev.F90 \
3432    OAD_tape.F90 \
3433    OAD_regular_cp.F90 \
3434    revolve.F90
3435    
3436    OPENAD_SUPPORT_C_SRC_FILES = \
3437    iaddr.c \
3438    timeRatio.c
3439    
3440    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3441            cat \$^ > \$@
3442    
3443    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3444            cat \$^ > \$@
3445    
3446    f95_test.out: f95_test_mods.f90 f95_test.f90
3447            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3448            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3449    
3450    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3451    
3452    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3453    
3454    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3455    
3456    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3457            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3458    
3459    # create sources files modules from header files containing common blocks
3460    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3461            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3462    
3463    # create new header files with USE statements for the new modules made above
3464    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3465            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3466    
3467    # change the include directives of everybody to refer to  the new header files with the USE statements
3468    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3469            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3470    
3471    # makefile debug rule
3472    small_f: \$(CB2M_F90_PP_SRC_FILES)
3473    .PHONY: small_f
3474    
3475    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3476            cat \$^ > \$@
3477    
3478    # canonicalizer
3479    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3480            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3481    
3482    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3483    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3484            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3485    
3486    # F -> WHIRL
3487    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3488            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3489    
3490    # WHIRL -> XAIF
3491    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3492            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3493    
3494    # XAIF -> XAIF'
3495    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3496            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3497    
3498    # XAIF' -> WHIRL'
3499    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3500            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3501    
3502    # WHIRL' -> F'
3503    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3504            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3505    
3506    # insert template directives
3507    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3508            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3509    
3510    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3511    # postprocess F'
3512    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3513            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3514            # the target is a placeholder to trigger a single execution of the rule
3515            touch \$@
3516    # put this so make knows about the postprocessing output
3517    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3518    
3519    # link the XAIF schema files
3520    %.xsd:
3521            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3522    
3523    # link the support files:
3524    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3525            \$(LN) \${OADTOOLS}/\$@ .
3526    
3527    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3528    
3529    # ============ end OpenAD specific section ==============
3530    
3531    EOF
3532    
3533    fi
3534    
3535    #=========================================
3536    
3537    if test "x$EXEHOOK" != x ; then
3538        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3539    fi
3540    
3541  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3542  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3543      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 954  for i in $KPPFILES ; do Line 3545  for i in $KPPFILES ; do
3545      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3546          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3547      fi      fi
3548      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3549  done  done
3550    
3551  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 964  for i in $NOOPTFILES ; do Line 3555  for i in $NOOPTFILES ; do
3555      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3556          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3557      fi      fi
3558      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3559      echo $'\t$(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3560  done  done
3561    
3562  echo "  Add rules for links"  echo "  Add rules for links"
3563  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3564  rm -f srclinks.tmp  rm -f $TMP.srclinks
3565    
3566  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3567  echo $'\n\n'"# DO NOT DELETE" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3568    
3569    printf "\n===  Done  ===\n"
3570    
3571    # Create special header files
3572    $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3573    if test ! -f $PACKAGES_DOT_H ; then
3574        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3575    else
3576        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3577        RETVAL=$?
3578        if test "x$RETVAL" = x0 ; then
3579            rm -f $PACKAGES_DOT_H".tmp"
3580        else
3581            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3582            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3583        fi
3584    fi
3585    if test ! -f AD_CONFIG.h ; then
3586        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3587    fi
3588    
3589  echo $'\n'"===  Done  ==="  #  Write the "state" for future records
3590    if test "x$DUMPSTATE" = xt ; then
3591        printf "" > genmake_state
3592        for i in $gm_state ; do
3593            t1="t2=\$$i"
3594            eval $t1
3595            echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3596        done
3597    fi

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