19 |
-help | --help | -h | --h |
-help | --help | -h | --h |
20 |
Print this help message and exit. |
Print this help message and exit. |
21 |
|
|
22 |
|
-oad | --oad |
23 |
|
Generate a Makefile for an OpenAD built |
24 |
|
|
25 |
|
-nocat4ad | -dog4ad | -ncad | -dad |
26 |
|
do not concatenate (cat) source code sent to TAF |
27 |
|
resulting in compilation of multiple files |
28 |
|
|
29 |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
30 |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
31 |
Use "NAME" as the adoptfile. By default, the file at |
Use "NAME" as the adoptfile. By default, the file at |
32 |
|
"tools/adjoint_options/adjoint_oad" (for OpenAD built) or |
33 |
"tools/adjoint_options/adjoint_default" will be used. |
"tools/adjoint_options/adjoint_default" will be used. |
34 |
|
|
35 |
-nooptfile | --nooptfile |
-nooptfile | --nooptfile |
1087 |
} |
} |
1088 |
|
|
1089 |
check_lapack_libs() { |
check_lapack_libs() { |
1090 |
if test ! "x$SKIP_LAPACK_CHECK" = x ; then |
if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi |
|
return |
|
|
fi |
|
1091 |
echo >> $LOGFILE |
echo >> $LOGFILE |
1092 |
echo "running: check_lapack_libs()" >> $LOGFILE |
echo "running: check_lapack_libs()" >> $LOGFILE |
1093 |
cat <<EOF > genmake_tla.F |
cat <<EOF > genmake_tla.F |
1283 |
DEVEL= |
DEVEL= |
1284 |
HAVE_TEST_L= |
HAVE_TEST_L= |
1285 |
|
|
1286 |
# comment this line out to enable lapack test |
# set this to "t" to enable lapack test |
1287 |
SKIP_LAPACK_CHECK=t |
CHECK_FOR_LAPACK=f |
1288 |
|
|
1289 |
# DEFINES checked by test compilation or command-line |
# DEFINES checked by test compilation or command-line |
1290 |
HAVE_SYSTEM= |
HAVE_SYSTEM= |
1331 |
FS90= |
FS90= |
1332 |
|
|
1333 |
AUTODIFF_PKG_USED=f |
AUTODIFF_PKG_USED=f |
1334 |
|
OPENAD= |
1335 |
AD_OPTFILE= |
AD_OPTFILE= |
1336 |
|
CAT_SRC_FOR_TAF=1 |
1337 |
TAF= |
TAF= |
1338 |
AD_TAF_FLAGS= |
AD_TAF_FLAGS= |
1339 |
FTL_TAF_FLAGS= |
FTL_TAF_FLAGS= |
1363 |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
1364 |
|
|
1365 |
# The following are all related to adjoint/tangent-linear stuff |
# The following are all related to adjoint/tangent-linear stuff |
1366 |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
1367 |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
1368 |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
1369 |
|
|
1415 |
-optfile=* | --optfile=* | -of=* | --of=*) |
-optfile=* | --optfile=* | -of=* | --of=*) |
1416 |
OPTFILE=$ac_optarg ;; |
OPTFILE=$ac_optarg ;; |
1417 |
|
|
1418 |
|
-oad | --oad) |
1419 |
|
OPENAD="true" ; ALWAYS_USE_F90=1 ;; |
1420 |
|
-nocat4ad | -dog4ad | -ncad | -dad) |
1421 |
|
CAT_SRC_FOR_TAF=0 ;; |
1422 |
-adoptfile | --adoptfile | -adof | --adof) |
-adoptfile | --adoptfile | -adof | --adof) |
1423 |
ac_prev=AD_OPTFILE ;; |
ac_prev=AD_OPTFILE ;; |
1424 |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
1588 |
|
|
1589 |
done |
done |
1590 |
|
|
1591 |
TMP=./genmk_$$ |
#TMP=./genmk_$$ |
1592 |
#- try to put temporary files in system-local /tmp dir |
#- try to put temporary files in system-local /tmp dir |
1593 |
#TMP=/tmp/genmk_$$ |
TMP=/tmp/genmk_${USER}_$$ |
1594 |
#touch $TMP ; retVal=$? |
touch $TMP ; retVal=$? |
1595 |
#if [ $retVal -eq 0 ] ; then |
if [ $retVal -eq 0 ] ; then |
1596 |
# if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
1597 |
#else |
else |
1598 |
# TMP=./genmk_$$ |
TMP=./genmk_$$ |
1599 |
#fi |
fi |
1600 |
#rm -f $TMP |
rm -f $TMP |
1601 |
##echo " temp files: $TMP.*" |
#echo " temp files: $TMP.*" |
1602 |
|
|
1603 |
printf " getting local config information: " |
printf " getting local config information: " |
1604 |
if test -f $gm_local ; then |
if test -f $gm_local ; then |
1692 |
|
|
1693 |
echo " getting AD_OPTFILE information:" |
echo " getting AD_OPTFILE information:" |
1694 |
if test "x${AD_OPTFILE}" = x ; then |
if test "x${AD_OPTFILE}" = x ; then |
1695 |
if test "x$MITGCM_AD_OF" = x ; then |
if test "x$MITGCM_AD_OF" != x ; then |
1696 |
|
AD_OPTFILE=$MITGCM_AD_OF |
1697 |
|
elif test "x$OPENAD" = x ; then |
1698 |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
1699 |
else |
else |
1700 |
AD_OPTFILE=$MITGCM_AD_OF |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad |
1701 |
fi |
fi |
1702 |
fi |
fi |
1703 |
if test "x${AD_OPTFILE}" != xNONE ; then |
if test "x${AD_OPTFILE}" != xNONE ; then |
2370 |
fi |
fi |
2371 |
fi |
fi |
2372 |
|
|
2373 |
# Check for package RADTRANS: if LAPACK is not available, |
# Make sure the openad package is enabled if using OpenAD |
2374 |
# then issue a warning that the direct radtrans solver is not available. |
if test "x$OPENAD" != x ; then |
2375 |
if test "x$HAVE_LAPACK" != xt ; then |
echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1 |
|
echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1 |
|
2376 |
RETVAL=$? |
RETVAL=$? |
2377 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" != x0 ; then |
2378 |
cat <<EOF |
cat <<EOF |
|
********************************************************************* |
|
|
WARNING: the "radtrans" package was enabled but tests failed to |
|
|
compile LAPACK applications. This means that the direct radtrans |
|
|
solver is not available and compilation will fail if it is enabled. |
|
|
If you want to use the direct solver, please check that: |
|
2379 |
|
|
|
1) LAPACK is correctly installed for this compiler and |
|
|
2) the LIBS variable (within the "optfile") specifies the correct |
|
|
LAPACK library to link against. |
|
2380 |
********************************************************************* |
********************************************************************* |
2381 |
|
ERROR: when generating an adjoint with OpenAD, the openad package |
2382 |
|
must be enabled. Please add it to packages.conf. |
2383 |
|
********************************************************************* |
2384 |
|
|
2385 |
EOF |
EOF |
2386 |
|
exit 1 |
2387 |
fi |
fi |
2388 |
fi |
fi |
2389 |
|
|
2638 |
OAD_CB2M_FILES="/dev/null" |
OAD_CB2M_FILES="/dev/null" |
2639 |
OADTOOLS="$TOOLSDIR/OAD_support" |
OADTOOLS="$TOOLSDIR/OAD_support" |
2640 |
echo " looking for dontCompile file: " |
echo " looking for dontCompile file: " |
2641 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2642 |
if test -r $i"/dontCompile" ; then |
if test -r $i"/dontCompile" ; then |
2643 |
OAD_DONT_COMPILE=$i"/dontCompile" |
OAD_DONT_COMPILE=$i"/dontCompile" |
2644 |
echo " found $OAD_DONT_COMPILE" |
echo " found $OAD_DONT_COMPILE" |
2646 |
fi |
fi |
2647 |
done |
done |
2648 |
echo " looking for dontTransform file: " |
echo " looking for dontTransform file: " |
2649 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2650 |
if test -r $i"/dontTransform" ; then |
if test -r $i"/dontTransform" ; then |
2651 |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
2652 |
echo " found $OAD_DONT_TRANSFORM" |
echo " found $OAD_DONT_TRANSFORM" |
2654 |
fi |
fi |
2655 |
done |
done |
2656 |
echo " looking for keepOriginal file: " |
echo " looking for keepOriginal file: " |
2657 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2658 |
if test -r $i"/keepOriginal" ; then |
if test -r $i"/keepOriginal" ; then |
2659 |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
2660 |
echo " found $OAD_KEEP_ORIGINAL" |
echo " found $OAD_KEEP_ORIGINAL" |
2662 |
fi |
fi |
2663 |
done |
done |
2664 |
echo " looking for cb2mFiles: " |
echo " looking for cb2mFiles: " |
2665 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2666 |
if test -r $i"/cb2mFiles" ; then |
if test -r $i"/cb2mFiles" ; then |
2667 |
OAD_CB2M_FILES=$i"/cb2mFiles" |
OAD_CB2M_FILES=$i"/cb2mFiles" |
2668 |
echo " found $OAD_CB2M_FILES" |
echo " found $OAD_CB2M_FILES" |
2901 |
KFLAGS1 = ${KFLAGS1} |
KFLAGS1 = ${KFLAGS1} |
2902 |
KFLAGS2 = ${KFLAGS2} |
KFLAGS2 = ${KFLAGS2} |
2903 |
# Optim./debug for FC |
# Optim./debug for FC |
2904 |
FFLAGS = ${FFLAGS} ${FEXTRAFLAGS} |
FFLAGS = ${FFLAGS} |
2905 |
FOPTIM = ${FOPTIM} |
FOPTIM = ${FOPTIM} ${FEXTRAFLAGS} |
2906 |
# Optim./debug for FC |
# Optim./debug for FC |
2907 |
F90FLAGS = ${F90FLAGS} |
F90FLAGS = ${F90FLAGS} |
2908 |
F90OPTIM = ${F90OPTIM} |
F90OPTIM = ${F90OPTIM} |
2978 |
|
|
2979 |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
2980 |
|
|
|
output.txt: \$(EXECUTABLE) |
|
|
@printf 'running ... ' |
|
|
@\$(EXECUTABLE) > \$@ |
|
|
|
|
2981 |
# remove most of the files that "make" generates |
# remove most of the files that "make" generates |
2982 |
clean: |
clean: |
2983 |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
3129 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3130 |
rm -f $TMP.adSrcFiles |
rm -f $TMP.adSrcFiles |
3131 |
|
|
3132 |
|
if test $CAT_SRC_FOR_TAF = 0 ; then |
3133 |
|
cat >>$MAKEFILE <<EOF |
3134 |
|
|
3135 |
|
# ... Utilities ... |
3136 |
|
remove_comments: |
3137 |
|
sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES) |
3138 |
|
@-rm -f \$(AD_FILES:.$FS=.$FS.bak) |
3139 |
|
adj_sed: |
3140 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS) |
3141 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak) |
3142 |
|
ftl_sed: |
3143 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS) |
3144 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak) |
3145 |
|
adobjfiles: \$(AD_FILES:.$FS=_ad.o) |
3146 |
|
ftlobjfiles: \$(AD_FILES:.$FS=_tl.o) |
3147 |
|
EOF |
3148 |
|
fi |
3149 |
|
|
3150 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3151 |
|
|
3152 |
# ... AD ... |
# ... AD ... |
3169 |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3170 |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
3171 |
|
|
3172 |
ad_taf_output.$FS: ad_input_code.$FS |
adtafonly: |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
|
3173 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3174 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3175 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3176 |
|
|
3177 |
adtafonly: |
EOF |
3178 |
|
|
3179 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3180 |
|
cat >>$MAKEFILE <<EOF |
3181 |
|
# ... send 1 file to TAF ... |
3182 |
|
ad_taf_output.$FS: ad_input_code.$FS |
3183 |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
3184 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3185 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3186 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3188 |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3189 |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3190 |
|
|
3191 |
ad_tamc_output.$FS: ad_input_code.$FS |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
|
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
|
3192 |
|
|
3193 |
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
EOF |
|
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
|
3194 |
|
|
3195 |
|
else |
3196 |
|
cat >>$MAKEFILE <<EOF |
3197 |
|
# ... send multiple files to TAF ... |
3198 |
|
ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3199 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3200 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3201 |
|
@-rm -f ad_config.template |
3202 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3203 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3204 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo '' |
3205 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3206 |
|
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES) |
3207 |
|
\$(MAKE) -f \$(MAKEFILE) adj_sed |
3208 |
|
cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS |
3209 |
|
|
3210 |
|
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3211 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3212 |
|
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3213 |
|
|
3214 |
|
adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
3215 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3216 |
|
|
3217 |
|
EOF |
3218 |
|
fi |
3219 |
|
|
3220 |
|
cat >>$MAKEFILE <<EOF |
3221 |
adonlyfwd: |
adonlyfwd: |
3222 |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
3223 |
|
|
3224 |
adtrick: |
adtrick: |
3225 |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
3226 |
|
|
3227 |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
ad_tamc_output.$FS: ad_input_code.$FS |
3228 |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
3229 |
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
3230 |
|
|
3231 |
|
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
3232 |
|
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
3233 |
|
|
3234 |
# ... FTL ... |
# ... FTL ... |
3235 |
ftlall: ftl_exe_target |
ftlall: ftl_exe_target |
3251 |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3252 |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
3253 |
|
|
3254 |
ftl_taf_output.$FS: ftl_input_code.$FS |
ftltafonly: |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
|
3255 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3256 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3257 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3258 |
|
|
3259 |
ftltafonly: |
EOF |
3260 |
|
|
3261 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3262 |
|
cat >>$MAKEFILE <<EOF |
3263 |
|
# ... send 1 file to TAF ... |
3264 |
|
ftl_taf_output.$FS: ftl_input_code.$FS |
3265 |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
3266 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3267 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3268 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3270 |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3271 |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3272 |
|
|
3273 |
|
EOF |
3274 |
|
|
3275 |
|
else |
3276 |
|
cat >>$MAKEFILE <<EOF |
3277 |
|
# ... send multiple files to TAF ... |
3278 |
|
ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3279 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3280 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3281 |
|
@-rm -f ad_config.template |
3282 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3283 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3284 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo '' |
3285 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3286 |
|
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES) |
3287 |
|
\$(MAKE) -f \$(MAKEFILE) ftl_sed |
3288 |
|
cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS |
3289 |
|
|
3290 |
|
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3291 |
|
\$(MAKE) -f \$(MAKEFILE) ftlobjfiles |
3292 |
|
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3293 |
|
|
3294 |
|
EOF |
3295 |
|
fi |
3296 |
|
|
3297 |
|
cat >>$MAKEFILE <<EOF |
3298 |
ftl_tamc_output.$FS: ftl_input_code.$FS |
ftl_tamc_output.$FS: ftl_input_code.$FS |
3299 |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
3300 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
3337 |
# ============ begin OpenAD specific section ============== |
# ============ begin OpenAD specific section ============== |
3338 |
|
|
3339 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3340 |
|
# ... OpenAD ... |
3341 |
|
|
3342 |
# all the source files linked from the various locations: |
# all the source files linked from the various locations: |
3343 |
ALL_LINKED_FILES= \ |
ALL_LINKED_FILES= \ |
3391 |
|
|
3392 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3393 |
|
|
3394 |
adAll: \$(EXE_AD) |
adAll: ad_exe_target |
3395 |
.PHONY: adAll |
.PHONY: adAll |
3396 |
|
|
3397 |
|
ad_exe_target: |
3398 |
|
@echo Update AD_CONFIG.h and make \$(EXE_AD) |
3399 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3400 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3401 |
|
@-rm -f ad_config.template |
3402 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3403 |
|
|
3404 |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
3405 |
|
|
3406 |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
3458 |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
3459 |
.PHONY: small_f |
.PHONY: small_f |
3460 |
|
|
|
ad_output.txt: \$(EXE_AD) |
|
|
@printf 'linking data files ... ' |
|
|
\$(LN) -f ../input_ad/data* ../input_ad/eedata . |
|
|
\$(LN) -f ../../global_ocean.90x40x15/input/*.bin . |
|
|
@printf 'running ... ' |
|
|
@./\$(EXE_AD) > \$@ |
|
|
|
|
3461 |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
3462 |
cat \$^ > \$@ |
cat \$^ > \$@ |
3463 |
|
|