17 |
where [OPTIONS] can be: |
where [OPTIONS] can be: |
18 |
|
|
19 |
-help | --help | -h | --h |
-help | --help | -h | --h |
20 |
Print this help message and exit. |
Print this help message and exit. |
21 |
|
|
22 |
|
-oad | --oad |
23 |
|
Generate a Makefile for an OpenAD built |
24 |
|
|
25 |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
26 |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
27 |
Use "NAME" as the adoptfile. By default, the file at |
Use "NAME" as the adoptfile. By default, the file at |
28 |
"tools/adjoint_options/adjoint_default" will be used. |
"tools/adjoint_options/adjoint_oad" (for OpenAD built) or |
29 |
|
"tools/adjoint_options/adjoint_default" will be used. |
30 |
|
|
31 |
-nooptfile | --nooptfile |
-nooptfile | --nooptfile |
32 |
-optfile NAME | --optfile NAME | -of NAME | --of NAME |
-optfile NAME | --optfile NAME | -of NAME | --of NAME |
33 |
-optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME |
-optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME |
34 |
Use "NAME" as the optfile. By default, an attempt will be |
Use "NAME" as the optfile. By default, an attempt will be |
35 |
made to find an appropriate "standard" optfile in the |
made to find an appropriate "standard" optfile in the |
36 |
tools/build_options/ directory. |
tools/build_options/ directory. |
37 |
|
|
38 |
-pdepend NAME | --pdepend NAME |
-pdepend NAME | --pdepend NAME |
39 |
-pdepend=NAME | --pdepend=NAME |
-pdepend=NAME | --pdepend=NAME |
40 |
Get package dependency information from "NAME". |
Get package dependency information from "NAME". |
41 |
|
|
42 |
-pgroups NAME | --pgroups NAME |
-pgroups NAME | --pgroups NAME |
43 |
-pgroups=NAME | --pgroups=NAME |
-pgroups=NAME | --pgroups=NAME |
44 |
Get the package groups information from "NAME". |
Get the package groups information from "NAME". |
45 |
|
|
46 |
-bash NAME |
-bash NAME |
47 |
Explicitly specify the Bourne or BASH shell to use |
Explicitly specify the Bourne or BASH shell to use |
48 |
|
|
49 |
-make NAME | -m NAME |
-make NAME | -m NAME |
50 |
--make=NAME | -m=NAME |
--make=NAME | -m=NAME |
51 |
Use "NAME" for the MAKE program. The default is "make" but |
Use "NAME" for the MAKE program. The default is "make" but |
52 |
many platforms, "gmake" is the preferred choice. |
many platforms, "gmake" is the preferred choice. |
53 |
|
|
54 |
-makefile NAME | -mf NAME |
-makefile NAME | -mf NAME |
55 |
--makefile=NAME | -mf=NAME |
--makefile=NAME | -mf=NAME |
56 |
Call the makefile "NAME". The default is "Makefile". |
Call the makefile "NAME". The default is "Makefile". |
57 |
|
|
58 |
-makedepend NAME | -md NAME |
-makedepend NAME | -md NAME |
59 |
--makedepend=NAME | -md=NAME |
--makedepend=NAME | -md=NAME |
60 |
Use "NAME" for the MAKEDEPEND program. |
Use "NAME" for the MAKEDEPEND program. |
61 |
|
|
62 |
-rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME |
-rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME |
63 |
-rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME |
-rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME |
64 |
Specify the location of the MITgcm ROOTDIR as "NAME". |
Specify the location of the MITgcm ROOTDIR as "NAME". |
65 |
By default, genamke will try to find the location by |
By default, genamke will try to find the location by |
66 |
looking in parent directories (up to the 5th parent). |
looking in parent directories (up to the 5th parent). |
67 |
|
|
68 |
-mods NAME | --mods NAME | -mo NAME | --mo NAME |
-mods NAME | --mods NAME | -mo NAME | --mo NAME |
69 |
-mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME |
-mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME |
70 |
Here, "NAME" specifies a list of directories that are |
Here, "NAME" specifies a list of directories that are |
71 |
used for additional source code. Files found in the |
used for additional source code. Files found in the |
72 |
"mods list" are given preference over files of the same |
"mods list" are given preference over files of the same |
73 |
name found elsewhere. |
name found elsewhere. |
74 |
|
|
75 |
-disable NAME | --disable NAME |
-disable NAME | --disable NAME |
76 |
-disable=NAME | --disable=NAME |
-disable=NAME | --disable=NAME |
77 |
Here "NAME" specifies a list of packages that we don't |
Here "NAME" specifies a list of packages that we don't |
78 |
want to use. If this violates package dependencies, |
want to use. If this violates package dependencies, |
79 |
genamke will exit with an error message. |
genamke will exit with an error message. |
80 |
|
|
81 |
-enable NAME | --enable NAME |
-enable NAME | --enable NAME |
82 |
-enable=NAME | --enable=NAME |
-enable=NAME | --enable=NAME |
83 |
Here "NAME" specifies a list of packages that we wish |
Here "NAME" specifies a list of packages that we wish |
84 |
to specifically enable. If this violates package |
to specifically enable. If this violates package |
85 |
dependencies, genamke will exit with an error message. |
dependencies, genamke will exit with an error message. |
86 |
|
|
87 |
-standarddirs NAME | --standarddirs NAME |
-standarddirs NAME | --standarddirs NAME |
88 |
-standarddirs=NAME | --standarddirs=NAME |
-standarddirs=NAME | --standarddirs=NAME |
89 |
Here, "NAME" specifies a list of directories to be |
Here, "NAME" specifies a list of directories to be |
90 |
used as the "standard" code. |
used as the "standard" code. |
91 |
|
|
92 |
-fortran NAME | --fortran NAME | -fc NAME | --fc NAME |
-fortran NAME | --fortran NAME | -fc NAME | --fc NAME |
93 |
-fc=NAME | --fc=NAME |
-fc=NAME | --fc=NAME |
94 |
Use "NAME" as the fortran compiler. By default, genmake |
Use "NAME" as the fortran compiler. By default, genmake |
95 |
will search for a working compiler by trying a list of |
will search for a working compiler by trying a list of |
96 |
"usual suspects" such as g77, f77, etc. |
"usual suspects" such as g77, f77, etc. |
97 |
|
|
98 |
-cc NAME | --cc NAME | -cc=NAME | --cc=NAME |
-cc NAME | --cc NAME | -cc=NAME | --cc=NAME |
99 |
Use "NAME" as the C compiler. By default, genmake |
Use "NAME" as the C compiler. By default, genmake |
100 |
will search for a working compiler by trying a list of |
will search for a working compiler by trying a list of |
101 |
"usual suspects" such as gcc, c89, cc, etc. |
"usual suspects" such as gcc, c89, cc, etc. |
102 |
|
|
103 |
-use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 |
-use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 |
104 |
Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW) |
Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW) |
105 |
*only* works if CPP_EEOPTIONS.h allows this. |
*only* works if CPP_EEOPTIONS.h allows this. |
106 |
|
|
107 |
-ignoretime | -ignore_time | --ignoretime | --ignore_time |
-ignoretime | -ignore_time | --ignoretime | --ignore_time |
108 |
Ignore all the "wall clock" routines entirely. This will |
Ignore all the "wall clock" routines entirely. This will |
109 |
not in any way hurt the model results -- it simply means |
not in any way hurt the model results -- it simply means |
110 |
that the code that checks how long the model spends in |
that the code that checks how long the model spends in |
111 |
various routines will give junk values. |
various routines will give junk values. |
112 |
|
|
113 |
-ts | --ts |
-ts | --ts |
114 |
Produce timing information per timestep |
Produce timing information per timestep |
115 |
-papis | --papis |
-papis | --papis |
116 |
Produce summary MFlop/s (and IPC) with PAPI per timestep |
Produce summary MFlop/s (and IPC) with PAPI per timestep |
117 |
-pcls | --pcls |
-pcls | --pcls |
118 |
Produce summary MFlop/s etc. with PCL per timestep |
Produce summary MFlop/s etc. with PCL per timestep |
119 |
-foolad | --foolad |
-foolad | --foolad |
120 |
Fool the AD code generator |
Fool the AD code generator |
121 |
-papi | --papi |
-papi | --papi |
122 |
Performance analysis with PAPI |
Performance analysis with PAPI |
123 |
-pcl | --pcl |
-pcl | --pcl |
124 |
Performance analysis with PCL |
Performance analysis with PCL |
125 |
-hpmt | --hpmt |
-hpmt | --hpmt |
126 |
Performance analysis with the HPM Toolkit |
Performance analysis with the HPM Toolkit |
127 |
|
|
128 |
-ieee | --ieee |
-ieee | --ieee |
129 |
use IEEE numerics. Note that this option *only* works |
use IEEE numerics. Note that this option *only* works |
130 |
if it is supported by the OPTFILE that is being used. |
if it is supported by the OPTFILE that is being used. |
131 |
-devel | --devel |
-devel | --devel |
132 |
Add additional warning and debugging flags for development |
Add additional warning and debugging flags for development |
133 |
(if supported by the OPTFILE); also switch to IEEE numerics. |
(if supported by the OPTFILE); also switch to IEEE numerics. |
134 |
-gsl | --gsl |
-gsl | --gsl |
135 |
Use GSL to control floating point rounding and precision |
Use GSL to control floating point rounding and precision |
136 |
|
|
137 |
-mpi | --mpi |
-mpi | --mpi |
138 |
Include MPI header files and link to MPI libraries |
Include MPI header files and link to MPI libraries |
139 |
-mpi=PATH | --mpi=PATH |
-mpi=PATH | --mpi=PATH |
140 |
Include MPI header files and link to MPI libraries using MPI_ROOT |
Include MPI header files and link to MPI libraries using MPI_ROOT |
141 |
set to PATH. i.e. Include files from \$PATH/include, link to libraries |
set to PATH. i.e. Include files from \$PATH/include, link to libraries |
142 |
from \$PATH/lib and use binaries from \$PATH/bin. |
from \$PATH/lib and use binaries from \$PATH/bin. |
143 |
|
|
144 |
-omp | --omp |
-omp | --omp |
145 |
Activate OpenMP code + use Compiler option OMPFLAG |
Activate OpenMP code + use Compiler option OMPFLAG |
146 |
-omp=OMPFLAG | --omp=OMPFLAG |
-omp=OMPFLAG | --omp=OMPFLAG |
147 |
Activate OpenMP code + use Compiler option OMPFLAG |
Activate OpenMP code + use Compiler option OMPFLAG |
148 |
|
|
149 |
-es | --es | -embed-source | --embed-source |
-es | --es | -embed-source | --embed-source |
150 |
Embed a tarball containing the full source code |
Embed a tarball containing the full source code |
151 |
(including the Makefile, etc.) used to build the |
(including the Makefile, etc.) used to build the |
152 |
executable [off by default] |
executable [off by default] |
153 |
|
|
154 |
-ds | --ds |
-ds | --ds |
155 |
Report genmake internal variables status (DUMPSTATE) |
Report genmake internal variables status (DUMPSTATE) |
156 |
to file "genmake_state" (for debug purpose) |
to file "genmake_state" (for debug purpose) |
157 |
|
|
158 |
While it is most often a single word, the "NAME" variables specified |
While it is most often a single word, the "NAME" variables specified |
159 |
above can in many cases be a space-delimited string such as: |
above can in many cases be a space-delimited string such as: |
178 |
test_for_package_in_cpp_options() { |
test_for_package_in_cpp_options() { |
179 |
cpp_options=$1 |
cpp_options=$1 |
180 |
pkg=$2 |
pkg=$2 |
181 |
test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]" |
test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>" |
182 |
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]" |
test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>" |
183 |
test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]" |
test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>" |
184 |
test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]" |
test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>" |
|
test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$" |
|
185 |
} |
} |
186 |
|
|
187 |
# Search for particular CPP #cmds associated with MPI |
# Search for particular CPP #cmds associated with MPI |
188 |
# usage: test_for_mpi_in_cpp_eeoptions CPP_file |
# usage: test_for_mpi_in_cpp_eeoptions CPP_file |
189 |
test_for_mpi_in_cpp_eeoptions() { |
test_for_mpi_in_cpp_eeoptions() { |
190 |
cpp_options=$1 |
cpp_options=$1 |
191 |
test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]" |
test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>" |
192 |
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]" |
test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>" |
|
test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$" |
|
|
test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$" |
|
193 |
} |
} |
194 |
|
|
195 |
# Search for particular string in a file. Return 1 if detected, 0 if not |
# Search for particular string in a file. Return 1 if detected, 0 if not |
197 |
test_for_string_in_file() { |
test_for_string_in_file() { |
198 |
file=$1 |
file=$1 |
199 |
strng=$2 |
strng=$2 |
200 |
grep -i "$strng" $file > /dev/null 2>&1 |
grep "$strng" $file > /dev/null 2>&1 |
201 |
RETVAL=$? |
RETVAL=$? |
202 |
if test "x${RETVAL}" = x0 ; then |
if test "x${RETVAL}" = x0 ; then |
203 |
printf "Error: In $file there is an illegal line: " |
printf "Error: In $file there is an illegal line: " |
204 |
grep -i "$strng" $file |
grep -i "$strng" $file |
205 |
exit 99 |
exit 99 |
206 |
fi |
fi |
207 |
return 0 |
return 0 |
212 |
expand_pkg_groups() { |
expand_pkg_groups() { |
213 |
new_packages= |
new_packages= |
214 |
if test -r $PKG_GROUPS ; then |
if test -r $PKG_GROUPS ; then |
215 |
cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp |
cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1 |
216 |
cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp |
cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2 |
217 |
matched=0 |
matched=0 |
218 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
219 |
line=`grep "^ *$i" ./p2.tmp` |
line=`grep "^ *$i" $TMP.p2` |
220 |
RETVAL=$? |
RETVAL=$? |
221 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" = x0 ; then |
222 |
matched=1 |
matched=1 |
228 |
fi |
fi |
229 |
done |
done |
230 |
PACKAGES=$new_packages |
PACKAGES=$new_packages |
231 |
rm -f ./p[1,2].tmp |
rm -f $TMP.p[1,2] |
232 |
return $matched |
return $matched |
233 |
else |
else |
234 |
echo "Warning: can't read package groups definition file: $PKG_GROUPS" |
echo "Warning: can't read package groups definition file: $PKG_GROUPS" |
328 |
# |
# |
329 |
# 1) a makedepend implementation shipped with the cyrus-imapd |
# 1) a makedepend implementation shipped with the cyrus-imapd |
330 |
# package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/ |
# package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/ |
331 |
# |
# 2) a local tools/xmakedepend shell script |
|
# 2) a known-buggy xmakedpend shell script |
|
332 |
# |
# |
333 |
# So the choices are, in order: |
# So the choices are, in order: |
|
# |
|
334 |
# 1) use the user-specified program |
# 1) use the user-specified program |
335 |
# 2) use a system-wide default |
# 2) use the local xmakedepend script (get all dependencies, but slower) |
336 |
# 3) locally build and use the cyrus implementation |
# 3) use a system-wide default |
337 |
# 4) fall back to the buggy local xmakedpend script |
# 4) locally build and use the cyrus makedepend |
338 |
|
# (faster, but can miss some dependencies) |
339 |
# |
# |
340 |
echo >> $LOGFILE |
echo >> $LOGFILE |
341 |
echo "running: look_for_makedepend()" >> $LOGFILE |
echo "running: look_for_makedepend()" >> $LOGFILE |
346 |
build_cyrus_makedepend |
build_cyrus_makedepend |
347 |
RETVAL=$? |
RETVAL=$? |
348 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
349 |
echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'" |
echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'" |
350 |
MAKEDEPEND= |
MAKEDEPEND= |
351 |
fi |
fi |
352 |
else |
else |
359 |
fi |
fi |
360 |
fi |
fi |
361 |
if test "x${MAKEDEPEND}" = x ; then |
if test "x${MAKEDEPEND}" = x ; then |
|
which makedepend > /dev/null 2>&1 |
|
|
RV0=$? |
|
362 |
test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst" |
test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst" |
363 |
# echo 'MAKEFILE="'$MAKEFILE'"' |
# echo 'MAKEFILE="'$MAKEFILE'"' |
364 |
cat <<EOF >> $MAKEFILE |
cat <<EOF >> $MAKEFILE |
374 |
stop |
stop |
375 |
end |
end |
376 |
EOF |
EOF |
377 |
makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1 |
$ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1 |
378 |
RV1=$? |
RV1=$? |
379 |
|
which makedepend > /dev/null 2>&1 |
380 |
|
RV2=$? |
381 |
|
if test "x${RV2}" = x0 ; then |
382 |
|
makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1 |
383 |
|
RV3=$? ; loc_msg='not working.' |
384 |
|
else RV3=$RV2 ; loc_msg='not found.' |
385 |
|
fi |
386 |
test -f $MAKEFILE && rm -f $MAKEFILE |
test -f $MAKEFILE && rm -f $MAKEFILE |
387 |
test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE |
test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE |
388 |
if test "x${RV0}${RV1}" = x00 ; then |
echo " check makedepend (local: $RV1, system: $RV2, $RV3)" |
389 |
|
if test "x${RV1}" = x0 ; then |
390 |
|
MAKEDEPEND='$(TOOLSDIR)/xmakedepend' |
391 |
|
echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE |
392 |
|
elif test "x${RV3}" = x0 ; then |
393 |
|
echo " local tools/xmakedepend not working. Use system-default makedepend" |
394 |
MAKEDEPEND=makedepend |
MAKEDEPEND=makedepend |
395 |
echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE |
echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE |
396 |
else |
else |
397 |
echo " system-default makedepend not found. Try to build cyrus-makedepend" |
echo " local tools/xmakedepend not working; system-default makedepend $loc_msg" |
398 |
|
echo -n " Try to build cyrus-makedepend ..." |
399 |
# Try to build the cyrus implementation |
# Try to build the cyrus implementation |
400 |
build_cyrus_makedepend |
build_cyrus_makedepend |
401 |
RETVAL=$? |
RETVAL=$? |
402 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" = x0 ; then |
403 |
echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend" |
echo " Works" |
404 |
MAKEDEPEND='$(TOOLSDIR)/xmakedepend' |
else |
405 |
echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE |
echo " Fails" ; echo "" >> $LOGFILE |
406 |
|
echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE |
407 |
|
echo "" |
408 |
|
exit -1 |
409 |
|
return |
410 |
fi |
fi |
411 |
fi |
fi |
412 |
fi |
fi |
419 |
( |
( |
420 |
cd $ROOTDIR/tools/cyrus-imapd-makedepend \ |
cd $ROOTDIR/tools/cyrus-imapd-makedepend \ |
421 |
&& ./configure > /dev/null 2>&1 \ |
&& ./configure > /dev/null 2>&1 \ |
422 |
&& make > /dev/null 2>&1 |
&& $MAKE > /dev/null 2>&1 |
423 |
if test -x ./makedepend.exe ; then |
if test -x ./makedepend.exe ; then |
424 |
$LN ./makedepend.exe ./makedepend |
$LN ./makedepend.exe ./makedepend |
425 |
fi |
fi |
443 |
{ |
{ |
444 |
printf " building the embed-encode utility... " |
printf " building the embed-encode utility... " |
445 |
if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then |
if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then |
446 |
if test ! -d "$ROOTDIR/tools/embed_encode" ; then |
if test ! -d "$ROOTDIR/tools/embed_encode" ; then |
447 |
echo |
echo |
448 |
echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\"" |
echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\"" |
449 |
echo |
echo |
450 |
EMBED_SRC=f |
EMBED_SRC=f |
451 |
return 1 |
return 1 |
452 |
fi |
fi |
453 |
clist="cc gcc c89 $CC" |
clist="cc gcc c89 $CC" |
454 |
for ic in $clist ; do |
for ic in $clist ; do |
455 |
comm="$ic -o encode_files encode_files.c" |
comm="$ic -o encode_files encode_files.c" |
604 |
EOF |
EOF |
605 |
exit 1 |
exit 1 |
606 |
fi |
fi |
607 |
|
} |
608 |
|
|
609 |
# # look for possible MPI libraries |
# Do a local copy of MPI headers files (in local dir ./mpi_headers/) after |
610 |
# mpi_libs= |
# checking for additional included headers (in case of chain of included header) |
611 |
# mpi_fort=`which mpif77 2>/dev/null` |
mpi_headers_do_local_copy() { |
612 |
# RETVAL=$? |
|
613 |
# if test "x${RETVAL}" = x0 ; then |
dBug=0 |
614 |
# cat >>test.f <<EOF |
rm -rf ./mpi_headers |
615 |
# PROGRAM HELLO |
if test -d $MPIINCLUDEDIR ; then |
616 |
# DO 10, I=1,10 |
|
617 |
# PRINT *,'Hello World' |
#----- check for additional headers (chain of included headers) |
618 |
# 10 CONTINUE |
echo -n ' Check MPI headers ... ' |
619 |
# STOP |
listIni=$MPI_HEADER_FILES |
620 |
# END |
echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1 |
621 |
# EOF |
outp=$? |
622 |
# eval "$mpi_fort -showme test.f > out" |
#- always check mpif.h (the only mpi-header included in standard MITgcm code) |
623 |
# RETVAL=$? |
if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi |
624 |
# if test "x${RETVAL}" = x0 ; then |
if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi |
625 |
# a=`cat out` |
|
626 |
# for i in $a ; do |
doCheck=1 ; list2copy='' ; list2check=$listIni |
627 |
# case $i in |
while test $doCheck = 1 ; do |
628 |
# -*) |
newList='' |
629 |
# mpi_libs="$mpi_libs $i" ;; |
for i in $list2check ; do |
630 |
# esac |
if test -f $MPIINCLUDEDIR/$i ; then |
631 |
# done |
newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \ |
632 |
# echo "The MPI libs appear to be:" |
sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g" -e 's/\"//g'` |
633 |
# echo " "$mpi_libs |
if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi |
634 |
# fi |
for j in $newInc ; do |
635 |
# rm -f test.f out |
echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1 |
636 |
# fi |
outp=$? |
637 |
|
if test $outp != 0 ; then |
638 |
|
if test $dBug = 1 ; then echo -n " ; adding $j" ; fi |
639 |
|
newList="$newList $j" |
640 |
|
fi |
641 |
|
done |
642 |
|
if test $dBug = 1 ; then echo "" ; fi |
643 |
|
fi |
644 |
|
done |
645 |
|
if test "x$newList" = x ; then doCheck=0 |
646 |
|
else list2check=$newList ; list2copy="$list2copy $newList" |
647 |
|
fi |
648 |
|
done |
649 |
|
list2copy="$MPI_HEADER_FILES $list2copy" |
650 |
|
if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi |
651 |
|
|
652 |
|
#----- create local mpi_headers dir if we have files to copy |
653 |
|
mkListInc=`echo $list2copy | wc -w` |
654 |
|
if test $mkListInc != 0 ; then |
655 |
|
echo 'create local "./mpi_headers" dir' |
656 |
|
mkdir -p ./mpi_headers |
657 |
|
INCLUDES="-I./mpi_headers $INCLUDES" |
658 |
|
mkListInc=1 |
659 |
|
fi |
660 |
|
if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi |
661 |
|
|
662 |
|
#----- make local copy and update LOCAL_MPI_HEADERS (if not already set) |
663 |
|
for i in $list2copy ; do |
664 |
|
if test -f $MPIINCLUDEDIR/$i ; then |
665 |
|
cp -p $MPIINCLUDEDIR/$i ./mpi_headers |
666 |
|
if test $i = 'mpif.h' ; then |
667 |
|
perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h |
668 |
|
fi |
669 |
|
if test $mkListInc = 2 ; then |
670 |
|
LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i" |
671 |
|
fi |
672 |
|
if test $mkListInc = 1 ; then |
673 |
|
LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2 |
674 |
|
fi |
675 |
|
fi |
676 |
|
done |
677 |
|
else |
678 |
|
echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory" |
679 |
|
echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)" |
680 |
|
# exit -1 |
681 |
|
fi |
682 |
} |
} |
683 |
|
|
684 |
# Parse the package dependency information |
# Parse the package dependency information |
1000 |
program fgennc |
program fgennc |
1001 |
#include "netcdf.inc" |
#include "netcdf.inc" |
1002 |
EOF |
EOF |
1003 |
if test ! "x$MPI" = x ; then |
#if test ! "x$MPI" = x ; then |
1004 |
echo '#include "mpif.h"' >> genmake_tnc.F |
# echo '#include "mpif.h"' >> genmake_tnc.F |
1005 |
fi |
#fi |
1006 |
cat <<EOF >> genmake_tnc.F |
cat <<EOF >> genmake_tnc.F |
1007 |
integer iret, ncid, xid |
integer iret, ncid, xid |
1008 |
iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid) |
iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid) |
1083 |
} |
} |
1084 |
|
|
1085 |
check_lapack_libs() { |
check_lapack_libs() { |
1086 |
if test ! "x$SKIP_LAPACK_CHECK" = x ; then |
if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi |
|
return |
|
|
fi |
|
1087 |
echo >> $LOGFILE |
echo >> $LOGFILE |
1088 |
echo "running: check_lapack_libs()" >> $LOGFILE |
echo "running: check_lapack_libs()" >> $LOGFILE |
1089 |
cat <<EOF > genmake_tla.F |
cat <<EOF > genmake_tla.F |
1183 |
echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE |
echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE |
1184 |
} |
} |
1185 |
|
|
1186 |
|
check_HAVE_FLUSH() { |
1187 |
|
if test ! "x$SKIP_CHECK_FLUSH" = x ; then |
1188 |
|
return |
1189 |
|
fi |
1190 |
|
echo >> $LOGFILE |
1191 |
|
echo "running: check_HAVE_FLUSH()" >> $LOGFILE |
1192 |
|
cat <<EOF > genmake_tflsh.$FS |
1193 |
|
program fgenflsh |
1194 |
|
integer iounit |
1195 |
|
character*9 fname |
1196 |
|
iounit = 26 |
1197 |
|
fname = 'tmp.tflsh' |
1198 |
|
open(iounit,FILE=fname,STATUS='unknown') |
1199 |
|
write(iounit,*) 'genmake_tflsh: hello' |
1200 |
|
call flush(iounit) |
1201 |
|
close(iounit) |
1202 |
|
end |
1203 |
|
EOF |
1204 |
|
echo "=== genmake_tflsh.$FS >>>" > genmake_tflsh.log |
1205 |
|
cat genmake_tflsh.$FS >> genmake_tflsh.log |
1206 |
|
echo "<<< genmake_tflsh.$FS ===" >> genmake_tflsh.log |
1207 |
|
|
1208 |
|
echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS \ " >> genmake_tflsh.log |
1209 |
|
echo " && $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log |
1210 |
|
$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1 \ |
1211 |
|
&& $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1 |
1212 |
|
RET_COMPILE=$? |
1213 |
|
|
1214 |
|
if test "x$RET_COMPILE" = x0 ; then |
1215 |
|
HAVE_FLUSH=t |
1216 |
|
#cat genmake_tflsh.log >> $LOGFILE |
1217 |
|
echo " check_HAVE_FLUSH: successful" >> $LOGFILE |
1218 |
|
else |
1219 |
|
HAVE_FLUSH=f |
1220 |
|
cat genmake_tflsh.log >> $LOGFILE |
1221 |
|
fi |
1222 |
|
rm -f genmake_tflsh* |
1223 |
|
echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE |
1224 |
|
} |
1225 |
|
|
1226 |
############################################################################### |
############################################################################### |
1227 |
# Sequential part of script starts here |
# Sequential part of script starts here |
1279 |
DEVEL= |
DEVEL= |
1280 |
HAVE_TEST_L= |
HAVE_TEST_L= |
1281 |
|
|
1282 |
|
# set this to "t" to enable lapack test |
1283 |
|
CHECK_FOR_LAPACK=f |
1284 |
|
|
1285 |
# DEFINES checked by test compilation or command-line |
# DEFINES checked by test compilation or command-line |
1286 |
HAVE_SYSTEM= |
HAVE_SYSTEM= |
1287 |
HAVE_FDATE= |
HAVE_FDATE= |
1293 |
HAVE_ETIME= |
HAVE_ETIME= |
1294 |
IGNORE_TIME= |
IGNORE_TIME= |
1295 |
HAVE_LAPACK= |
HAVE_LAPACK= |
1296 |
|
HAVE_FLUSH= |
1297 |
|
|
1298 |
MODS= |
MODS= |
1299 |
TOOLSDIR= |
TOOLSDIR= |
1301 |
INCLUDEDIRS= |
INCLUDEDIRS= |
1302 |
STANDARDDIRS="USE_THE_DEFAULT" |
STANDARDDIRS="USE_THE_DEFAULT" |
1303 |
|
|
1304 |
|
#- local config file |
1305 |
|
gm_local="genmake_local" |
1306 |
|
|
1307 |
G2ARGS= |
G2ARGS= |
1308 |
BASH= |
BASH= |
1309 |
PWD=`pwd` |
PWD=`pwd` |
1327 |
FS90= |
FS90= |
1328 |
|
|
1329 |
AUTODIFF_PKG_USED=f |
AUTODIFF_PKG_USED=f |
1330 |
|
OPENAD= |
1331 |
AD_OPTFILE= |
AD_OPTFILE= |
1332 |
TAF= |
TAF= |
1333 |
AD_TAF_FLAGS= |
AD_TAF_FLAGS= |
1340 |
SVD_TAMC_FLAGS= |
SVD_TAMC_FLAGS= |
1341 |
TAMC_EXTRA= |
TAMC_EXTRA= |
1342 |
|
|
1343 |
|
DIVA= |
1344 |
|
MPIINCLUDEDIR= |
1345 |
|
MPI_HEADER_FILES= |
1346 |
|
LOCAL_MPI_HEADERS= |
1347 |
|
|
1348 |
# The following state can be set directly by command-line switches |
# The following state can be set directly by command-line switches |
1349 |
gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM" |
gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE" |
1350 |
gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS" |
gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4" |
1351 |
gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE" |
gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE" |
1352 |
|
|
1353 |
# The following state is not directly set by command-line switches |
# The following state is not directly set by command-line switches |
1354 |
gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM" |
gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM" |
1355 |
gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS" |
gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS" |
1356 |
gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK" |
gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK" |
1357 |
gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE" |
gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE" |
1358 |
gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK" |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
1359 |
|
|
1360 |
# The following are all related to adjoint/tangent-linear stuff |
# The following are all related to adjoint/tangent-linear stuff |
1361 |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
1362 |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
1363 |
gm_s12="TAF_EXTRA TAMC_EXTRA" |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
1364 |
|
|
1365 |
gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8" |
gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8" |
1366 |
gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12" |
gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12" |
1381 |
rm -f genmake_state genmake_*optfile $LOGFILE |
rm -f genmake_state genmake_*optfile $LOGFILE |
1382 |
|
|
1383 |
echo "=== Processing options files and arguments ===" |
echo "=== Processing options files and arguments ===" |
|
gm_local="genmake_local" |
|
|
printf " getting local config information: " |
|
|
if test -f $gm_local ; then |
|
|
echo "using $gm_local" |
|
|
. $gm_local |
|
|
# echo "DISABLE=$DISABLE" |
|
|
# echo "ENABLE=$ENABLE" |
|
|
else |
|
|
echo "none found" |
|
|
fi |
|
1384 |
|
|
1385 |
#echo "$0::$1:$2:$3:$4:$5:$6:$7:" |
#echo "$0::$1:$2:$3:$4:$5:$6:$7:" |
1386 |
#parse_options |
#parse_options |
1410 |
-optfile=* | --optfile=* | -of=* | --of=*) |
-optfile=* | --optfile=* | -of=* | --of=*) |
1411 |
OPTFILE=$ac_optarg ;; |
OPTFILE=$ac_optarg ;; |
1412 |
|
|
1413 |
|
-oad | --oad) |
1414 |
|
OPENAD="true" ;; |
1415 |
-adoptfile | --adoptfile | -adof | --adof) |
-adoptfile | --adoptfile | -adof | --adof) |
1416 |
ac_prev=AD_OPTFILE ;; |
ac_prev=AD_OPTFILE ;; |
1417 |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
1442 |
-makedepend=* | --makedepend=* | -md=* | --md=*) |
-makedepend=* | --makedepend=* | -md=* | --md=*) |
1443 |
MAKEDEPEND=$ac_optarg ;; |
MAKEDEPEND=$ac_optarg ;; |
1444 |
|
|
1445 |
-makefile | --makefile | -ma | --ma) |
-makefile | --makefile | -mf | --mf) |
1446 |
ac_prev=MAKEFILE ;; |
ac_prev=MAKEFILE ;; |
1447 |
-makefile=* | --makefile=* | -ma=* | --ma=*) |
-makefile=* | --makefile=* | -mf=* | --mf=*) |
1448 |
MAKEFILE=$ac_optarg ;; |
MAKEFILE=$ac_optarg ;; |
1449 |
|
|
1450 |
-platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*) |
-platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*) |
1511 |
IEEE=true ;; |
IEEE=true ;; |
1512 |
-noieee | --noieee) |
-noieee | --noieee) |
1513 |
echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;; |
echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;; |
1514 |
-devel | --devel) |
-devel | --devel) |
1515 |
IEEE=true ; DEVEL=true ;; |
IEEE=true ; DEVEL=true ;; |
1516 |
-gsl | --gsl) |
-gsl | --gsl) |
1517 |
GSL=true ;; |
GSL=true ;; |
1518 |
|
|
1519 |
-ts | --ts) |
-ts | --ts) |
1581 |
|
|
1582 |
done |
done |
1583 |
|
|
1584 |
|
#TMP=./genmk_$$ |
1585 |
|
#- try to put temporary files in system-local /tmp dir |
1586 |
|
TMP=/tmp/genmk_$$ |
1587 |
|
touch $TMP ; retVal=$? |
1588 |
|
if [ $retVal -eq 0 ] ; then |
1589 |
|
if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
1590 |
|
else |
1591 |
|
TMP=./genmk_$$ |
1592 |
|
fi |
1593 |
|
rm -f $TMP |
1594 |
|
#echo " temp files: $TMP.*" |
1595 |
|
|
1596 |
|
printf " getting local config information: " |
1597 |
|
if test -f $gm_local ; then |
1598 |
|
echo "using $gm_local" |
1599 |
|
. $gm_local |
1600 |
|
else |
1601 |
|
echo "none found" |
1602 |
|
fi |
1603 |
|
|
1604 |
if test -f ./.genmakerc ; then |
if test -f ./.genmakerc ; then |
1605 |
echo |
echo |
1606 |
echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" |
echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" |
1685 |
|
|
1686 |
echo " getting AD_OPTFILE information:" |
echo " getting AD_OPTFILE information:" |
1687 |
if test "x${AD_OPTFILE}" = x ; then |
if test "x${AD_OPTFILE}" = x ; then |
1688 |
if test "x$MITGCM_AD_OF" = x ; then |
if test "x$MITGCM_AD_OF" != x ; then |
1689 |
|
AD_OPTFILE=$MITGCM_AD_OF |
1690 |
|
elif test "x$OPENAD" = x ; then |
1691 |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
1692 |
else |
else |
1693 |
AD_OPTFILE=$MITGCM_AD_OF |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad |
1694 |
fi |
fi |
1695 |
fi |
fi |
1696 |
if test "x${AD_OPTFILE}" != xNONE ; then |
if test "x${AD_OPTFILE}" != xNONE ; then |
1814 |
|
|
1815 |
if test ! "x$MPI" = x ; then |
if test ! "x$MPI" = x ; then |
1816 |
echo " Turning on MPI cpp macros" |
echo " Turning on MPI cpp macros" |
1817 |
DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI" |
DEFINES="$DEFINES -DALLOW_USE_MPI" |
1818 |
|
#- To compile code older than checkpoint63s (2012/09/05), un-comment the following line: |
1819 |
|
# DEFINES="$DEFINES -DALWAYS_USE_MPI" |
1820 |
fi |
fi |
1821 |
if test ! "x$OMP" = x ; then |
if test ! "x$OMP" = x ; then |
1822 |
echo " Add OMPFLAG and turn on OpenMP cpp macros" |
echo " Add OMPFLAG and turn on OpenMP cpp macros" |
1891 |
if test ! "x$PAPI" = x ; then |
if test ! "x$PAPI" = x ; then |
1892 |
echo " PAPI and the HPM Toolkit cannot co-exist!" |
echo " PAPI and the HPM Toolkit cannot co-exist!" |
1893 |
echo " Sticking with PAPI!" |
echo " Sticking with PAPI!" |
1894 |
else if test ! "x$PCL" = x ; then |
else |
1895 |
|
if test ! "x$PCL" = x ; then |
1896 |
echo " PCL and the HPM Toolkit cannot co-exist!" |
echo " PCL and the HPM Toolkit cannot co-exist!" |
1897 |
echo " Sticking with PCL!" |
echo " Sticking with PCL!" |
1898 |
else |
else |
1899 |
echo " Turning on performance analysis with the HPM Toolkit" |
echo " Turning on performance analysis with the HPM Toolkit" |
1900 |
echo " Please make sure HPMTINC, HPMTLIB are defined" |
echo " Please make sure HPMTINC, HPMTLIB are defined" |
1901 |
DEFINES="$DEFINES -DUSE_LIBHPM" |
DEFINES="$DEFINES -DUSE_LIBHPM" |
1902 |
INCLUDES="$INCLUDES $HPMTINC" |
INCLUDES="$INCLUDES $HPMTINC" |
1903 |
LIBS="$LIBS $HPMTLIB" |
LIBS="$LIBS $HPMTLIB" |
1904 |
fi |
fi |
1905 |
fi |
fi |
1906 |
fi |
fi |
1907 |
if test ! "x$GSL" = x ; then |
if test ! "x$GSL" = x ; then |
2041 |
else |
else |
2042 |
echo "no" |
echo "no" |
2043 |
fi |
fi |
|
DEFINES="$DEFINES $IGNORE_TIME" |
|
2044 |
|
|
2045 |
|
printf " Can we call FLUSH intrinsic subroutine... " |
2046 |
|
check_HAVE_FLUSH |
2047 |
|
if test "x$HAVE_FLUSH" = xt ; then |
2048 |
|
DEFINES="$DEFINES -DHAVE_FLUSH" |
2049 |
|
echo "yes" |
2050 |
|
else |
2051 |
|
echo "no" |
2052 |
|
fi |
2053 |
|
|
2054 |
|
DEFINES="$DEFINES $IGNORE_TIME" |
2055 |
if test "x$EMBED_SRC" = xt ; then |
if test "x$EMBED_SRC" = xt ; then |
2056 |
build_embed_encode |
build_embed_encode |
2057 |
fi |
fi |
2235 |
exit 1 |
exit 1 |
2236 |
else |
else |
2237 |
echo " using PKG_LIST=\"$PKG_LIST\"" |
echo " using PKG_LIST=\"$PKG_LIST\"" |
2238 |
# Strip the comments and add all the names |
# Strip the comments and add all the names |
2239 |
pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'` |
pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'` |
2240 |
RETVAL=$? |
RETVAL=$? |
2241 |
if test "x${RETVAL}" != x0 ; then |
if test "x${RETVAL}" != x0 ; then |
2256 |
fi |
fi |
2257 |
|
|
2258 |
echo " applying DISABLE settings" |
echo " applying DISABLE settings" |
2259 |
echo "" > ./.tmp_pack |
echo "" > $TMP.pack |
2260 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
2261 |
echo $i >> ./.tmp_pack |
echo $i >> $TMP.pack |
2262 |
done |
done |
2263 |
for i in `grep "-" ./.tmp_pack` ; do |
for i in `grep "-" $TMP.pack` ; do |
2264 |
j=`echo $i | sed 's/[-]//'` |
j=`echo $i | sed 's/[-]//'` |
2265 |
DISABLE="$DISABLE $j" |
DISABLE="$DISABLE $j" |
2266 |
done |
done |
2278 |
done |
done |
2279 |
PACKAGES="$pack" |
PACKAGES="$pack" |
2280 |
echo " applying ENABLE settings" |
echo " applying ENABLE settings" |
2281 |
echo "" > ./.tmp_pack |
echo "" > $TMP.pack |
2282 |
PACKAGES="$PACKAGES $ENABLE" |
PACKAGES="$PACKAGES $ENABLE" |
2283 |
# Test if each explicitly referenced package exists |
# Test if each explicitly referenced package exists |
2284 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
2287 |
echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'" |
echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'" |
2288 |
exit 1 |
exit 1 |
2289 |
fi |
fi |
2290 |
echo $i >> ./.tmp_pack |
echo $i >> $TMP.pack |
2291 |
done |
done |
2292 |
PACKAGES= |
PACKAGES= |
2293 |
for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do |
for i in `grep -v "-" $TMP.pack | sort | uniq` ; do |
2294 |
PACKAGES="$PACKAGES $i" |
PACKAGES="$PACKAGES $i" |
2295 |
done |
done |
2296 |
rm -f ./.tmp_pack |
rm -f $TMP.pack |
2297 |
echo " packages are: $PACKAGES" |
echo " packages are: $PACKAGES" |
2298 |
|
|
2299 |
# Check for package MNC: if NetCDF is available, then build the MNC |
# Check for package MNC: if NetCDF is available, then build the MNC |
2330 |
echo "Error: problem encountered while building source files in pkg/mnc:" |
echo "Error: problem encountered while building source files in pkg/mnc:" |
2331 |
cat make_mnc.errors 1>&2 |
cat make_mnc.errors 1>&2 |
2332 |
if test "x$mnc_in" = x0 ; then |
if test "x$mnc_in" = x0 ; then |
2333 |
exit 1 |
exit 1 |
2334 |
else |
else |
2335 |
DISABLE="$DISABLE mnc" |
DISABLE="$DISABLE mnc" |
2336 |
fi |
fi |
2363 |
fi |
fi |
2364 |
fi |
fi |
2365 |
|
|
2366 |
# Check for package RADTRANS: if LAPACK is not available, |
# Make sure the openad package is enabled if using OpenAD |
2367 |
# then issue a warning that the direct radtrans solver is not available. |
if test "x$OPENAD" != x ; then |
2368 |
if test "x$HAVE_LAPACK" != xt ; then |
echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1 |
|
echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1 |
|
2369 |
RETVAL=$? |
RETVAL=$? |
2370 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" != x0 ; then |
2371 |
cat <<EOF |
cat <<EOF |
|
********************************************************************* |
|
|
WARNING: the "radtrans" package was enabled but tests failed to |
|
|
compile LAPACK applications. This means that the direct radtrans |
|
|
solver is not available and compilation will fail if it is enabled. |
|
|
If you want to use the direct solver, please check that: |
|
2372 |
|
|
|
1) LAPACK is correctly installed for this compiler and |
|
|
2) the LIBS variable (within the "optfile") specifies the correct |
|
|
LAPACK library to link against. |
|
2373 |
********************************************************************* |
********************************************************************* |
2374 |
|
ERROR: when generating an adjoint with OpenAD, the openad package |
2375 |
|
must be enabled. Please add it to packages.conf. |
2376 |
|
********************************************************************* |
2377 |
|
|
2378 |
EOF |
EOF |
2379 |
|
exit 1 |
2380 |
fi |
fi |
2381 |
fi |
fi |
2382 |
|
|
2568 |
|
|
2569 |
# Here, we build the list of files to be "run through" the adjoint |
# Here, we build the list of files to be "run through" the adjoint |
2570 |
# compiler. |
# compiler. |
2571 |
if test -f ./adSrcFiles.tmp ; then |
if test -f $TMP.adSrcFiles ; then |
2572 |
rm -f ./adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
2573 |
fi |
fi |
2574 |
echo " Creating the list of files for the adjoint compiler." |
echo " Creating the list of files for the adjoint compiler." |
2575 |
touch adSrcFiles.tmp |
touch $TMP.adSrcFiles |
2576 |
for i in $SOURCEDIRS ; do |
for i in $SOURCEDIRS ; do |
2577 |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
2578 |
for j in $list_files ; do |
for j in $list_files ; do |
2579 |
cat $i/$j >> adSrcFiles.tmp |
cat $i/$j >> $TMP.adSrcFiles |
2580 |
done |
done |
2581 |
done |
done |
2582 |
if test ! "x"$FS = "x.f" ; then |
if test ! "x"$FS = "x.f" ; then |
2583 |
cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f |
cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f |
2584 |
mv -f adSrcFiles.tmp_f adSrcFiles.tmp |
mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles |
2585 |
fi |
fi |
2586 |
|
|
2587 |
echo |
echo |
2593 |
fi |
fi |
2594 |
done |
done |
2595 |
|
|
2596 |
if test ! "x$DIVA" = x ; then |
if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then |
2597 |
echo " Creating the pseudo-MPI include directory" |
if test ! "x$MPIINCLUDEDIR" = x ; then |
2598 |
INCLUDES="-I./mpi_headers $INCLUDES" |
# Do a local copy of MPI headers files (in local dir ./mpi_headers/) after |
2599 |
rm -rf ./mpi_headers |
# checking for additional included headers (in case of chain of included |
2600 |
mkdir -p ./mpi_headers |
# header); also set LOCAL_MPI_HEADERS (if not already set) |
2601 |
|
mpi_headers_do_local_copy |
|
if test "x$MPIINCLUDEDIR" = x ; then |
|
|
if test "x$MPIHOME" = x ; then |
|
|
MPIHOME='/usr' |
|
|
fi |
|
|
MPIINCLUDEDIR='$MPIHOME/include' |
|
|
fi |
|
|
|
|
|
if test -r $MPIINCLUDEDIR/mpif.h ; then |
|
|
for i in $MPI_HEADER_FILES; do |
|
|
cp -p $MPIINCLUDEDIR/$i ./mpi_headers |
|
|
done |
|
|
|
|
|
perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h |
|
|
else |
|
|
echo " We cannot create a copy of mpif.h!" |
|
|
# exit -1 |
|
2602 |
fi |
fi |
2603 |
fi |
fi |
2604 |
|
|
2605 |
echo " Determining the list of source and include files" |
echo " Determining the list of source and include files" |
2606 |
rm -rf .links.tmp |
rm -rf $TMP.links |
2607 |
mkdir .links.tmp |
mkdir $TMP.links |
2608 |
touch .links.tmp/foo |
touch $TMP.links/foo |
2609 |
if test ! -r ".links.tmp/foo" ; then |
if test ! -r "$TMP.links/foo" ; then |
2610 |
echo |
echo |
2611 |
echo "ERROR : something is wrong with your directory permissions or" |
echo "ERROR : something is wrong with your directory permissions or" |
2612 |
echo " your user file-creation mask (\"umask\") since creating a" |
echo " your user file-creation mask (\"umask\") since creating a" |
2622 |
echo |
echo |
2623 |
exit 1 |
exit 1 |
2624 |
fi |
fi |
2625 |
rm -f .links.tmp/foo |
rm -f $TMP.links/foo |
2626 |
|
|
2627 |
if test "x$OPENAD" != x ; then |
if test "x$OPENAD" != x ; then |
2628 |
OAD_DONT_COMPILE="/dev/null" |
OAD_DONT_COMPILE="/dev/null" |
2629 |
OAD_DONT_TRANSFORM="/dev/null" |
OAD_DONT_TRANSFORM="/dev/null" |
2630 |
OAD_KEEP_ORIGINAL="/dev/null" |
OAD_KEEP_ORIGINAL="/dev/null" |
2631 |
OAD_CB2M_FILES="/dev/null" |
OAD_CB2M_FILES="/dev/null" |
2632 |
|
OADTOOLS="$TOOLSDIR/OAD_support" |
2633 |
echo " looking for dontCompile file: " |
echo " looking for dontCompile file: " |
2634 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2635 |
if test -r $i"/dontCompile" ; then |
if test -r $i"/dontCompile" ; then |
2636 |
OAD_DONT_COMPILE=$i"/dontCompile" |
OAD_DONT_COMPILE=$i"/dontCompile" |
2637 |
echo " found $OAD_DONT_COMPILE" |
echo " found $OAD_DONT_COMPILE" |
2639 |
fi |
fi |
2640 |
done |
done |
2641 |
echo " looking for dontTransform file: " |
echo " looking for dontTransform file: " |
2642 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2643 |
if test -r $i"/dontTransform" ; then |
if test -r $i"/dontTransform" ; then |
2644 |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
2645 |
echo " found $OAD_DONT_TRANSFORM" |
echo " found $OAD_DONT_TRANSFORM" |
2647 |
fi |
fi |
2648 |
done |
done |
2649 |
echo " looking for keepOriginal file: " |
echo " looking for keepOriginal file: " |
2650 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2651 |
if test -r $i"/keepOriginal" ; then |
if test -r $i"/keepOriginal" ; then |
2652 |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
2653 |
echo " found $OAD_KEEP_ORIGINAL" |
echo " found $OAD_KEEP_ORIGINAL" |
2655 |
fi |
fi |
2656 |
done |
done |
2657 |
echo " looking for cb2mFiles: " |
echo " looking for cb2mFiles: " |
2658 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2659 |
if test -r $i"/cb2mFiles" ; then |
if test -r $i"/cb2mFiles" ; then |
2660 |
OAD_CB2M_FILES=$i"/cb2mFiles" |
OAD_CB2M_FILES=$i"/cb2mFiles" |
2661 |
echo " found $OAD_CB2M_FILES" |
echo " found $OAD_CB2M_FILES" |
2665 |
echo " OpenAD exceptions: " |
echo " OpenAD exceptions: " |
2666 |
fi |
fi |
2667 |
|
|
2668 |
echo "# This section creates symbolic links" > srclinks.tmp |
echo "# This section creates symbolic links" > $TMP.srclinks |
2669 |
echo "" >> srclinks.tmp |
echo "" >> $TMP.srclinks |
2670 |
printf 'F77_SRC_FILES = ' > F77srclist.tmp |
printf 'F77_SRC_FILES = ' > $TMP.F77srclist |
2671 |
printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp |
printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist |
2672 |
printf 'C_SRC_FILES = ' > csrclist.tmp |
printf 'C_SRC_FILES = ' > $TMP.csrclist |
2673 |
printf 'F90_SRC_FILES = ' > F90srclist.tmp |
printf 'F90_SRC_FILES = ' > $TMP.F90srclist |
2674 |
printf 'H_SRC_FILES = ' > hsrclist.tmp |
printf 'H_SRC_FILES = ' > $TMP.hsrclist |
2675 |
printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp |
printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files |
2676 |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
2677 |
for d in $alldirs ; do |
for d in $alldirs ; do |
2678 |
deplist= |
deplist= |
2682 |
sfiles=`( echo $sfiles | grep -v _cb2m\. )` |
sfiles=`( echo $sfiles | grep -v _cb2m\. )` |
2683 |
fi |
fi |
2684 |
for sf in $sfiles ; do |
for sf in $sfiles ; do |
2685 |
if test ! -r ".links.tmp/$sf" ; then |
if test ! -r "$TMP.links/$sf" ; then |
2686 |
if test -f "$d/$sf" ; then |
if test -f "$d/$sf" ; then |
2687 |
ignore_f=f |
ignore_f=f |
2688 |
case $d/$sf in |
case $d/$sf in |
2707 |
if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then |
if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then |
2708 |
ignore_f=t |
ignore_f=t |
2709 |
else |
else |
2710 |
touch .links.tmp/$sf |
touch $TMP.links/$sf |
2711 |
deplist="$deplist $sf" |
deplist="$deplist $sf" |
2712 |
fi |
fi |
2713 |
;; |
;; |
2716 |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
2717 |
case $extn in |
case $extn in |
2718 |
F) |
F) |
2719 |
echo " \\" >> F77srclist.tmp |
echo " \\" >> $TMP.F77srclist |
2720 |
printf " $sf" >> F77srclist.tmp |
printf " $sf" >> $TMP.F77srclist |
2721 |
if test "x$OPENAD" != x ; then |
if test "x$OPENAD" = x ; then |
2722 |
basename=${sf%%.F} |
basename=${sf%%.F} |
2723 |
isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp` |
isAD=`egrep ^$basename.f'[ ]*' $TMP.adSrcFiles` |
2724 |
|
if test -z "$isAD" ; then |
2725 |
|
echo " \\" >> $TMP.nonADF77srclist |
2726 |
|
printf " $sf" >> $TMP.nonADF77srclist |
2727 |
|
fi |
2728 |
|
else #- OpenAD case: |
2729 |
|
basename=${sf%%.F} |
2730 |
|
isAD=`egrep ^$basename.f'[ ]*' $TMP.adSrcFiles` |
2731 |
if test -z "$isAD" ; then |
if test -z "$isAD" ; then |
2732 |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` |
2733 |
if test -z "$toBeIgnored" ; then |
if test -z "$toBeIgnored" ; then |
2734 |
echo " \\" >> nonADF77srclist.tmp |
echo " \\" >> $TMP.nonADF77srclist |
2735 |
printf " $sf" >> nonADF77srclist.tmp |
printf " $sf" >> $TMP.nonADF77srclist |
2736 |
else |
else |
2737 |
echo " not to be compiled : $sf" |
echo " not to be compiled : $sf" |
2738 |
fi |
fi |
2747 |
echo " original to be kept : $sf" |
echo " original to be kept : $sf" |
2748 |
fi |
fi |
2749 |
if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then |
if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then |
2750 |
echo " \\" >> nonADF77srclist.tmp |
echo " \\" >> $TMP.nonADF77srclist |
2751 |
printf " $sf" >> nonADF77srclist.tmp |
printf " $sf" >> $TMP.nonADF77srclist |
2752 |
fi |
fi |
2753 |
fi |
fi |
2754 |
fi |
fi |
2755 |
;; |
;; |
2756 |
F90) |
F90) |
2757 |
echo " \\" >> F90srclist.tmp |
echo " \\" >> $TMP.F90srclist |
2758 |
printf " $sf" >> F90srclist.tmp |
printf " $sf" >> $TMP.F90srclist |
2759 |
;; |
;; |
2760 |
c) |
c) |
2761 |
echo " \\" >> csrclist.tmp |
echo " \\" >> $TMP.csrclist |
2762 |
printf " $sf" >> csrclist.tmp |
printf " $sf" >> $TMP.csrclist |
2763 |
;; |
;; |
2764 |
h) |
h) |
2765 |
echo " \\" >> hsrclist.tmp |
echo " \\" >> $TMP.hsrclist |
2766 |
printf " $sf" >> hsrclist.tmp |
printf " $sf" >> $TMP.hsrclist |
2767 |
;; |
;; |
2768 |
flow) |
flow) |
2769 |
echo " \\" >> ad_flow_files.tmp |
echo " \\" >> $TMP.ad_flow_files |
2770 |
printf " $sf" >> ad_flow_files.tmp |
printf " $sf" >> $TMP.ad_flow_files |
2771 |
;; |
;; |
2772 |
esac |
esac |
2773 |
fi |
fi |
2776 |
done |
done |
2777 |
if test "x$deplist" != x ; then |
if test "x$deplist" != x ; then |
2778 |
if test "$d" != "." ; then |
if test "$d" != "." ; then |
2779 |
echo "" >> srclinks.tmp |
echo "" >> $TMP.srclinks |
2780 |
echo "# These files are linked from $d" >> srclinks.tmp |
echo "# These files are linked from $d" >> $TMP.srclinks |
2781 |
echo "$deplist :" >> srclinks.tmp |
echo "$deplist :" >> $TMP.srclinks |
2782 |
# We need to make sure that the link isn't already there. |
# We need to make sure that the link isn't already there. |
2783 |
# This may happen when make thinks that a header file has to be "remade" |
# This may happen when make thinks that a header file has to be "remade" |
2784 |
# because a module it depends on has changed. In this case we do nothing. |
# because a module it depends on has changed. In this case we do nothing. |
2785 |
printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp |
printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks |
2786 |
fi |
fi |
2787 |
fi |
fi |
2788 |
done |
done |
2789 |
rm -rf .links.tmp |
rm -rf $TMP.links |
2790 |
echo "" >> F77srclist.tmp |
echo "" >> $TMP.F77srclist |
2791 |
echo "" >> nonADF77srclist.tmp |
echo "" >> $TMP.nonADF77srclist |
2792 |
echo "" >> csrclist.tmp |
echo "" >> $TMP.csrclist |
2793 |
echo "" >> F90srclist.tmp |
echo "" >> $TMP.F90srclist |
2794 |
echo "" >> hsrclist.tmp |
echo "" >> $TMP.hsrclist |
2795 |
echo "" >> ad_flow_files.tmp |
echo "" >> $TMP.ad_flow_files |
2796 |
|
|
2797 |
CMDLINE=$0 |
CMDLINE=$0 |
2798 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
2799 |
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
2800 |
else CMDLINE="$CMDLINE '$xx'" ; fi |
else CMDLINE="$CMDLINE '$xx'" ; fi |
2801 |
done |
done |
2802 |
|
|
2803 |
if test -f $MAKEFILE ; then |
if test -f $MAKEFILE ; then |
2831 |
# INCLUDES : Directories searched for header files |
# INCLUDES : Directories searched for header files |
2832 |
# DEFINES : Macro definitions for CPP |
# DEFINES : Macro definitions for CPP |
2833 |
# MAKEDEPEND : Dependency generator |
# MAKEDEPEND : Dependency generator |
|
# KPP : Special preprocessor command (specific to platform) |
|
|
# KFLAGS : Flags for KPP |
|
2834 |
# FC : Fortran compiler command |
# FC : Fortran compiler command |
2835 |
# FFLAGS : Configuration/debugging options for FC |
# FFLAGS : Configuration/debugging options for FC |
2836 |
# FOPTIM : Optimization options for FC |
# FOPTIM : Optimization options for FC |
2844 |
EXEDIR = ${EXEDIR} |
EXEDIR = ${EXEDIR} |
2845 |
EXECUTABLE = \$(EXEDIR)/${EXECUTABLE} |
EXECUTABLE = \$(EXEDIR)/${EXECUTABLE} |
2846 |
TOOLSDIR = ${TOOLSDIR} |
TOOLSDIR = ${TOOLSDIR} |
2847 |
|
OADTOOLS = ${OADTOOLS} |
2848 |
|
|
2849 |
#eh3 new defines for the adjoint work |
#eh3 new defines for the adjoint work |
2850 |
AUTODIFF = ${ROOTDIR}/pkg/autodiff |
AUTODIFF = ${ROOTDIR}/pkg/autodiff |
2865 |
echo "EMBEDDED_FILES = " >>$MAKEFILE |
echo "EMBEDDED_FILES = " >>$MAKEFILE |
2866 |
fi |
fi |
2867 |
|
|
2868 |
|
# extract default cpp search path so we can pass it to makedepend |
2869 |
|
CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'` |
2870 |
|
|
2871 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
2872 |
# Unix ln (link) |
# Unix ln (link) |
2873 |
LN = ${LN} |
LN = ${LN} |
|
# C preprocessor |
|
|
CPP = cat \$< | ${S64} | ${CPP} |
|
2874 |
# Dependency generator |
# Dependency generator |
2875 |
MAKEDEPEND = ${MAKEDEPEND} |
MAKEDEPEND = ${MAKEDEPEND} |
2876 |
# Special preprocessor (KAP on DECs, FPP on Crays) |
# Special preprocessor (KAP on DECs, FPP on Crays) |
2888 |
DEFINES = ${DEFINES} |
DEFINES = ${DEFINES} |
2889 |
# Includes for CPP |
# Includes for CPP |
2890 |
INCLUDES = ${INCLUDES} |
INCLUDES = ${INCLUDES} |
2891 |
|
# default CPP includes for makedepend |
2892 |
|
CPPINCLUDES = ${CPPINCLUDES} |
2893 |
# Flags for KPP |
# Flags for KPP |
2894 |
KFLAGS1 = ${KFLAGS1} |
KFLAGS1 = ${KFLAGS1} |
2895 |
KFLAGS2 = ${KFLAGS2} |
KFLAGS2 = ${KFLAGS2} |
2908 |
# Flags and libraries needed for linking |
# Flags and libraries needed for linking |
2909 |
LIBS = ${LIBS} |
LIBS = ${LIBS} |
2910 |
# Name of the makefile |
# Name of the makefile |
2911 |
MAKEFILE=${MAKEFILE} |
MAKEFILE = ${MAKEFILE} |
2912 |
|
# Name of the make program |
2913 |
|
MAKE = ${MAKE} |
2914 |
|
|
2915 |
EOF |
EOF |
2916 |
|
|
2917 |
cat F77srclist.tmp >> $MAKEFILE |
cat $TMP.F77srclist >> $MAKEFILE |
2918 |
cat nonADF77srclist.tmp >> $MAKEFILE |
cat $TMP.nonADF77srclist >> $MAKEFILE |
2919 |
cat csrclist.tmp >> $MAKEFILE |
cat $TMP.csrclist >> $MAKEFILE |
2920 |
cat F90srclist.tmp >> $MAKEFILE |
cat $TMP.F90srclist >> $MAKEFILE |
2921 |
cat hsrclist.tmp >> $MAKEFILE |
cat $TMP.hsrclist >> $MAKEFILE |
2922 |
cat ad_flow_files.tmp >> $MAKEFILE |
cat $TMP.ad_flow_files >> $MAKEFILE |
2923 |
|
|
2924 |
rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp |
rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files |
2925 |
|
|
2926 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2927 |
|
|
2941 |
|
|
2942 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
2943 |
|
|
2944 |
all: \$(EXECUTABLE) |
all: fwd_exe_target |
2945 |
|
fwd_exe_target: |
2946 |
|
@echo Update AD_CONFIG.h and make \$(EXECUTABLE) |
2947 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
2948 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
2949 |
|
@-rm -f ad_config.template |
2950 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE) |
2951 |
|
|
2952 |
\$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES) |
\$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES) |
2953 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
2954 |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS) |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS) |
2955 |
|
|
2956 |
depend: |
depend: |
2957 |
@make -f \$(MAKEFILE) links |
@\$(MAKE) -f \$(MAKEFILE) links |
2958 |
\$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES) |
\$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES) |
2959 |
\$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE) |
\$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE) |
2960 |
-rm -f makedepend.out |
-rm -f makedepend.out |
2961 |
|
|
2971 |
|
|
2972 |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
2973 |
|
|
|
output.txt: \$(EXECUTABLE) |
|
|
@printf 'running ... ' |
|
|
@\$(EXECUTABLE) > \$@ |
|
|
|
|
2974 |
# remove most of the files that "make" generates |
# remove most of the files that "make" generates |
2975 |
clean: |
clean: |
2976 |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
2980 |
|
|
2981 |
# remove most of the files that "make" and "make depend" generate |
# remove most of the files that "make" and "make depend" generate |
2982 |
Clean: |
Clean: |
2983 |
@make -f \$(MAKEFILE) clean |
@\$(MAKE) -f \$(MAKEFILE) clean |
2984 |
@make -f \$(MAKEFILE) cleanlinks |
@\$(MAKE) -f \$(MAKEFILE) cleanlinks |
2985 |
-rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old |
-rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old |
2986 |
-rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log |
-rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log |
|
-rm -f genmake_warnings genmake_errors make.log |
|
2987 |
|
|
2988 |
# remove also the executable, files that "genmake2" generates (except Makefile) |
# remove also the executable, files that "genmake2" generates (except Makefile) |
2989 |
# and output from a run (plus log files from testreport) |
# and output from a run (plus log files from testreport) |
2990 |
CLEAN: |
CLEAN: |
2991 |
@make -f \$(MAKEFILE) Clean |
@\$(MAKE) -f \$(MAKEFILE) Clean |
2992 |
-rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak |
-rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak |
2993 |
-rm -f $LOGFILE genmake_state genmake_*optfile |
-rm -f $LOGFILE genmake_state genmake_*optfile |
2994 |
-rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
-rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
2995 |
|
-rm -rf mpi_headers mnc_test_* |
2996 |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
2997 |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
2998 |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
2999 |
-rm -f *.txt STD* *diagnostics.log datetime |
-rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log |
3000 |
|
-rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_* |
3001 |
-rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
-rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
3002 |
-rm -rf mnc_test_* |
-rm -f oad_cp.[0-9][0-9][0-9].????? |
3003 |
|
|
3004 |
makefile: |
makefile: |
3005 |
$THIS_SCRIPT $G2ARGS |
$THIS_SCRIPT $G2ARGS |
3009 |
# Special targets (SPECIAL_FILES) which are created by make |
# Special targets (SPECIAL_FILES) which are created by make |
3010 |
${PACKAGES_DOT_H}: |
${PACKAGES_DOT_H}: |
3011 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
3012 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@ |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@ |
3013 |
AD_CONFIG.h: |
AD_CONFIG.h: |
3014 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
3015 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@ |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@ |
3016 |
FC_NAMEMANGLE.h: |
FC_NAMEMANGLE.h: |
3017 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
3018 |
echo "$FC_NAMEMANGLE" > \$@ |
echo "$FC_NAMEMANGLE" > \$@ |
3052 |
## This nullifies any default implicit rules concerning these two file types: |
## This nullifies any default implicit rules concerning these two file types: |
3053 |
## %.o : %.F |
## %.o : %.F |
3054 |
|
|
3055 |
|
# C preprocessing and replacing the _d in constants: |
3056 |
|
CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64} |
3057 |
|
|
3058 |
.F.$FS: |
.F.$FS: |
3059 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPPCMD) > \$@ |
3060 |
.$FS.o: |
.$FS.o: |
3061 |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
3062 |
.F.o: |
.F.o: |
3063 |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
3064 |
.F90.$FS90: |
.F90.$FS90: |
3065 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPPCMD) > \$@ |
3066 |
.FF90.f$FS90: |
.FF90.f$FS90: |
3067 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPPCMD) > \$@ |
3068 |
.$FS90.o: |
.$FS90.o: |
3069 |
\$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< |
\$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< |
3070 |
.f$FS90.o: |
.f$FS90.o: |
3073 |
.c.o: |
.c.o: |
3074 |
\$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< |
\$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< |
3075 |
.flow.flowdir: |
.flow.flowdir: |
3076 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPPCMD) > \$@ |
3077 |
|
|
3078 |
# Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain |
# Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain |
3079 |
.F.p: |
.F.p: |
3080 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPPCMD) > \$@ |
3081 |
.p.$FS: |
.p.$FS: |
3082 |
\$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$< |
\$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$< |
3083 |
|
|
3096 |
|
|
3097 |
TAF_EXTRA = ${TAF_EXTRA} |
TAF_EXTRA = ${TAF_EXTRA} |
3098 |
TAMC_EXTRA = ${TAMC_EXTRA} |
TAMC_EXTRA = ${TAMC_EXTRA} |
3099 |
|
LOCAL_MPI_HEADERS = ${LOCAL_MPI_HEADERS} |
3100 |
|
|
3101 |
EOF |
EOF |
3102 |
|
|
3114 |
echo " Add the source list for AD code generation" |
echo " Add the source list for AD code generation" |
3115 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3116 |
printf "AD_FILES = " >> $MAKEFILE |
printf "AD_FILES = " >> $MAKEFILE |
3117 |
AD_FILES=`cat adSrcFiles.tmp` |
AD_FILES=`cat $TMP.adSrcFiles` |
3118 |
for i in $AD_FILES ; do |
for i in $AD_FILES ; do |
3119 |
echo " \\" >> $MAKEFILE |
echo " \\" >> $MAKEFILE |
3120 |
printf " $i" >> $MAKEFILE |
printf " $i" >> $MAKEFILE |
3121 |
done |
done |
3122 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3123 |
rm -f adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
3124 |
|
|
3125 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3126 |
|
|
3127 |
# ... AD ... |
# ... AD ... |
3128 |
adall: \$(EXE_AD) |
adall: ad_exe_target |
3129 |
adtaf: ad_taf_output.$FS |
adtaf: ad_taf_output.$FS |
3130 |
adtamc: ad_tamc_output.$FS |
adtamc: ad_tamc_output.$FS |
3131 |
|
|
3132 |
ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES) |
ad_exe_target: |
3133 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
@echo Update AD_CONFIG.h and make \$(EXE_AD) |
3134 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3135 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3136 |
|
@-rm -f ad_config.template |
3137 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3138 |
|
|
3139 |
|
ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES) |
3140 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3141 |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3142 |
-rm -f ad_config.template |
@-rm -f ad_config.template |
3143 |
@make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3144 |
@make -f \$(MAKEFILE) \$(FLOWFILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3145 |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
3146 |
|
|
3147 |
ad_taf_output.$FS: ad_input_code.$FS |
ad_taf_output.$FS: ad_input_code.$FS |
3148 |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
3149 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3150 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3151 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3155 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3156 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3157 |
|
|
3158 |
\${EXE_AD}: ad_taf_output.o \$(OBJFILES) |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3159 |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3160 |
|
|
3161 |
ad_tamc_output.$FS: ad_input_code.$FS |
ad_tamc_output.$FS: ad_input_code.$FS |
3162 |
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
3171 |
adtrick: |
adtrick: |
3172 |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
3173 |
|
|
3174 |
adobj: ad_taf_output.o \$(OBJFILES) |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
3175 |
|
|
3176 |
# ... FTL ... |
# ... FTL ... |
3177 |
ftlall: \$(EXE_FTL) |
ftlall: ftl_exe_target |
3178 |
ftltaf: ftl_taf_output.$FS |
ftltaf: ftl_taf_output.$FS |
3179 |
ftltamc: ftl_tamc_output.$FS |
ftltamc: ftl_tamc_output.$FS |
3180 |
|
|
3181 |
ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) |
ftl_exe_target: |
3182 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template |
@echo Update AD_CONFIG.h and make \$(EXE_FTL) |
3183 |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3184 |
-rm -f ftl_config.template |
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3185 |
@make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
@-rm -f ad_config.template |
3186 |
@make -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
\$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL) |
3187 |
|
|
3188 |
|
ftl_input_code.$FS: \$(AD_FILES) |
3189 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3190 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3191 |
|
@-rm -f ad_config.template |
3192 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3193 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3194 |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
3195 |
|
|
3196 |
ftl_taf_output.$FS: ftl_input_code.$FS |
ftl_taf_output.$FS: ftl_input_code.$FS |
3197 |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
3198 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3199 |
ls -l ftl_input_code_ftl.$FS |
ls -l ftl_input_code_tl.$FS |
3200 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3201 |
|
|
3202 |
ftltafonly: |
ftltafonly: |
3203 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3204 |
ls -l ftl_input_code_ftl.$FS |
ls -l ftl_input_code_tl.$FS |
3205 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3206 |
|
|
3207 |
\${EXE_FTL}: ftl_taf_output.o \$(OBJFILES) |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3208 |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS) |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3209 |
|
|
3210 |
ftl_tamc_output.$FS: ftl_input_code.$FS |
ftl_tamc_output.$FS: ftl_input_code.$FS |
3211 |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
3234 |
touch ad_taf_output.$FS ftl_taf_output.$FS |
touch ad_taf_output.$FS ftl_taf_output.$FS |
3235 |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS |
3236 |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS |
3237 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3238 |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3239 |
-rm -f ftl_config.template |
@-rm -f ad_config.template |
3240 |
|
|
3241 |
EOF |
EOF |
3242 |
|
|
3249 |
# ============ begin OpenAD specific section ============== |
# ============ begin OpenAD specific section ============== |
3250 |
|
|
3251 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3252 |
|
# ... OpenAD ... |
3253 |
|
|
3254 |
# all the source files linked from the various locations: |
# all the source files linked from the various locations: |
3255 |
ALL_LINKED_FILES= \ |
ALL_LINKED_FILES= \ |
3289 |
echo " \\" >> $MAKEFILE |
echo " \\" >> $MAKEFILE |
3290 |
printf " ${i}_mod.f$FS90" >> $MAKEFILE |
printf " ${i}_mod.f$FS90" >> $MAKEFILE |
3291 |
done |
done |
3292 |
AD_FILES=`cat adSrcFiles.tmp` |
AD_FILES=`cat $TMP.adSrcFiles` |
3293 |
for i in $AD_FILES ; do |
for i in $AD_FILES ; do |
3294 |
basename=${i%%.f} |
basename=${i%%.f} |
3295 |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}` |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}` |
3299 |
fi |
fi |
3300 |
done |
done |
3301 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3302 |
rm -f adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
3303 |
|
|
3304 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3305 |
|
|
3306 |
adAll: \$(EXE_AD) |
adAll: ad_exe_target |
3307 |
.PHONY: adAll |
.PHONY: adAll |
3308 |
|
|
3309 |
|
ad_exe_target: |
3310 |
|
@echo Update AD_CONFIG.h and make \$(EXE_AD) |
3311 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3312 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3313 |
|
@-rm -f ad_config.template |
3314 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3315 |
|
|
3316 |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
3317 |
|
|
3318 |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
3328 |
OAD_active.F90 \ |
OAD_active.F90 \ |
3329 |
OAD_cp.F90 \ |
OAD_cp.F90 \ |
3330 |
OAD_rev.F90 \ |
OAD_rev.F90 \ |
3331 |
OAD_tape.F90 |
OAD_tape.F90 \ |
3332 |
|
revolve.F90 |
3333 |
|
|
3334 |
OPENAD_SUPPORT_C_SRC_FILES = \ |
OPENAD_SUPPORT_C_SRC_FILES = \ |
3335 |
iaddr.c \ |
iaddr.c \ |
3355 |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS) |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS) |
3356 |
|
|
3357 |
# create sources files modules from header files containing common blocks |
# create sources files modules from header files containing common blocks |
3358 |
%_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk |
%_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk |
3359 |
../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk |
\${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk |
3360 |
|
|
3361 |
# create new header files with USE statements for the new modules made above |
# create new header files with USE statements for the new modules made above |
3362 |
%_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk |
%_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk |
3363 |
../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES) |
\${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES) |
3364 |
|
|
3365 |
# change the include directives of everybody to refer to the new header files with the USE statements |
# change the include directives of everybody to refer to the new header files with the USE statements |
3366 |
%_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash |
%_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash |
3367 |
../OAD_support/cb2mUseModules.bash $< ${MPI} |
\${OADTOOLS}/cb2mUseModules.bash $< ${MPI} |
3368 |
|
|
3369 |
# makefile debug rule |
# makefile debug rule |
3370 |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
3371 |
.PHONY: small_f |
.PHONY: small_f |
3372 |
|
|
|
ad_output.txt: \$(EXE_AD) |
|
|
@printf 'linking data files ... ' |
|
|
\$(LN) -f ../input_ad/data* ../input_ad/eedata . |
|
|
\$(LN) -f ../../global_ocean.90x40x15/input/*.bin . |
|
|
@printf 'running ... ' |
|
|
@./\$(EXE_AD) > \$@ |
|
|
|
|
3373 |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
3374 |
cat \$^ > \$@ |
cat \$^ > \$@ |
3375 |
|
|
3379 |
|
|
3380 |
# replace stop statements (to avoid the implied unstructured control flow) with print statements |
# replace stop statements (to avoid the implied unstructured control flow) with print statements |
3381 |
ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90 |
ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90 |
3382 |
cat \$< | sed -f ../OAD_support/stop2print.sed > ad_input_code_sf.pre.s2p.f90 |
cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90 |
3383 |
|
|
3384 |
# F -> WHIRL |
# F -> WHIRL |
3385 |
ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90 |
ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90 |
3402 |
\${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$< |
\${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$< |
3403 |
|
|
3404 |
# insert template directives |
# insert template directives |
3405 |
ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash |
ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash |
3406 |
../OAD_support/insertTemplateDir.bash \$< \$@ |
\${OADTOOLS}/insertTemplateDir.bash \$< \$@ |
3407 |
|
|
3408 |
PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F |
PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F |
3409 |
# postprocess F' |
# postprocess F' |
3410 |
postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90 |
postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90 |
3411 |
\${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ../OAD_support/ad_inline.f \$< |
\${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$< |
3412 |
# the target is a placeholder to trigger a single execution of the rule |
# the target is a placeholder to trigger a single execution of the rule |
3413 |
touch \$@ |
touch \$@ |
3414 |
# put this so make knows about the postprocessing output |
# put this so make knows about the postprocessing output |
3419 |
\$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . |
\$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . |
3420 |
|
|
3421 |
# link the support files: |
# link the support files: |
3422 |
\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES): |
\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS): |
3423 |
\$(LN) ../OAD_support/\$@ . |
\$(LN) \${OADTOOLS}/\$@ . |
3424 |
|
|
3425 |
AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f) |
AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag |
3426 |
|
|
3427 |
# ============ end OpenAD specific section ============== |
# ============ end OpenAD specific section ============== |
3428 |
|
|
3458 |
done |
done |
3459 |
|
|
3460 |
echo " Add rules for links" |
echo " Add rules for links" |
3461 |
cat srclinks.tmp >> $MAKEFILE |
cat $TMP.srclinks >> $MAKEFILE |
3462 |
rm -f srclinks.tmp |
rm -f $TMP.srclinks |
3463 |
|
|
3464 |
echo " Adding makedepend marker" |
echo " Adding makedepend marker" |
3465 |
printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE |
printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE |
3467 |
printf "\n=== Done ===\n" |
printf "\n=== Done ===\n" |
3468 |
|
|
3469 |
# Create special header files |
# Create special header files |
3470 |
$BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp" |
$BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp" |
3471 |
if test ! -f $PACKAGES_DOT_H ; then |
if test ! -f $PACKAGES_DOT_H ; then |
3472 |
mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H |
mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H |
3473 |
else |
else |
3481 |
fi |
fi |
3482 |
fi |
fi |
3483 |
if test ! -f AD_CONFIG.h ; then |
if test ! -f AD_CONFIG.h ; then |
3484 |
$BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h |
$BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h |
3485 |
fi |
fi |
3486 |
|
|
3487 |
# Write the "state" for future records |
# Write the "state" for future records |