19 |
-help | --help | -h | --h |
-help | --help | -h | --h |
20 |
Print this help message and exit. |
Print this help message and exit. |
21 |
|
|
22 |
|
-oad | --oad |
23 |
|
Generate a Makefile for an OpenAD built |
24 |
|
|
25 |
|
-nocat4ad | -dog4ad | -ncad | -dad |
26 |
|
do not concatenate (cat) source code sent to TAF |
27 |
|
resulting in compilation of multiple files |
28 |
|
|
29 |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
30 |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
31 |
Use "NAME" as the adoptfile. By default, the file at |
Use "NAME" as the adoptfile. By default, the file at |
32 |
|
"tools/adjoint_options/adjoint_oad" (for OpenAD built) or |
33 |
"tools/adjoint_options/adjoint_default" will be used. |
"tools/adjoint_options/adjoint_default" will be used. |
34 |
|
|
35 |
-nooptfile | --nooptfile |
-nooptfile | --nooptfile |
216 |
expand_pkg_groups() { |
expand_pkg_groups() { |
217 |
new_packages= |
new_packages= |
218 |
if test -r $PKG_GROUPS ; then |
if test -r $PKG_GROUPS ; then |
219 |
cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp |
cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1 |
220 |
cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp |
cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2 |
221 |
matched=0 |
matched=0 |
222 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
223 |
line=`grep "^ *$i" ./p2.tmp` |
line=`grep "^ *$i" $TMP.p2` |
224 |
RETVAL=$? |
RETVAL=$? |
225 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" = x0 ; then |
226 |
matched=1 |
matched=1 |
232 |
fi |
fi |
233 |
done |
done |
234 |
PACKAGES=$new_packages |
PACKAGES=$new_packages |
235 |
rm -f ./p[1,2].tmp |
rm -f $TMP.p[1,2] |
236 |
return $matched |
return $matched |
237 |
else |
else |
238 |
echo "Warning: can't read package groups definition file: $PKG_GROUPS" |
echo "Warning: can't read package groups definition file: $PKG_GROUPS" |
1087 |
} |
} |
1088 |
|
|
1089 |
check_lapack_libs() { |
check_lapack_libs() { |
1090 |
if test ! "x$SKIP_LAPACK_CHECK" = x ; then |
if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi |
|
return |
|
|
fi |
|
1091 |
echo >> $LOGFILE |
echo >> $LOGFILE |
1092 |
echo "running: check_lapack_libs()" >> $LOGFILE |
echo "running: check_lapack_libs()" >> $LOGFILE |
1093 |
cat <<EOF > genmake_tla.F |
cat <<EOF > genmake_tla.F |
1283 |
DEVEL= |
DEVEL= |
1284 |
HAVE_TEST_L= |
HAVE_TEST_L= |
1285 |
|
|
1286 |
# comment this line out to enable lapack test |
# set this to "t" to enable lapack test |
1287 |
SKIP_LAPACK_CHECK=t |
CHECK_FOR_LAPACK=f |
1288 |
|
|
1289 |
# DEFINES checked by test compilation or command-line |
# DEFINES checked by test compilation or command-line |
1290 |
HAVE_SYSTEM= |
HAVE_SYSTEM= |
1331 |
FS90= |
FS90= |
1332 |
|
|
1333 |
AUTODIFF_PKG_USED=f |
AUTODIFF_PKG_USED=f |
1334 |
|
OPENAD= |
1335 |
|
OPENAD_DIVA= |
1336 |
AD_OPTFILE= |
AD_OPTFILE= |
1337 |
|
CAT_SRC_FOR_TAF=1 |
1338 |
TAF= |
TAF= |
1339 |
AD_TAF_FLAGS= |
AD_TAF_FLAGS= |
1340 |
FTL_TAF_FLAGS= |
FTL_TAF_FLAGS= |
1360 |
gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM" |
gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM" |
1361 |
gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS" |
gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS" |
1362 |
gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK" |
gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK" |
1363 |
gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE" |
gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE" |
1364 |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
1365 |
|
|
1366 |
# The following are all related to adjoint/tangent-linear stuff |
# The following are all related to adjoint/tangent-linear stuff |
1367 |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
1368 |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
1369 |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
1370 |
|
|
1416 |
-optfile=* | --optfile=* | -of=* | --of=*) |
-optfile=* | --optfile=* | -of=* | --of=*) |
1417 |
OPTFILE=$ac_optarg ;; |
OPTFILE=$ac_optarg ;; |
1418 |
|
|
1419 |
|
-oad | --oad) |
1420 |
|
OPENAD="true" ; ALWAYS_USE_F90=1 ;; |
1421 |
|
-nocat4ad | -dog4ad | -ncad | -dad) |
1422 |
|
CAT_SRC_FOR_TAF=0 ;; |
1423 |
-adoptfile | --adoptfile | -adof | --adof) |
-adoptfile | --adoptfile | -adof | --adof) |
1424 |
ac_prev=AD_OPTFILE ;; |
ac_prev=AD_OPTFILE ;; |
1425 |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
1426 |
AD_OPTFILE=$ac_optarg ;; |
AD_OPTFILE=$ac_optarg ;; |
1427 |
|
|
1428 |
|
-diva | --diva) |
1429 |
|
OPENAD_DIVA="ALLOW_OPENAD_DIVA=" ;; |
1430 |
|
|
1431 |
-pdepend | --pdepend) |
-pdepend | --pdepend) |
1432 |
ac_prev=PKG_DEPEND ;; |
ac_prev=PKG_DEPEND ;; |
1433 |
-pdepend=* | --pdepend=*) |
-pdepend=* | --pdepend=*) |
1592 |
|
|
1593 |
done |
done |
1594 |
|
|
1595 |
|
#TMP=./genmk_$$ |
1596 |
|
#- try to put temporary files in system-local /tmp dir |
1597 |
|
TMP=/tmp/genmk_${USER}_$$ |
1598 |
|
touch $TMP ; retVal=$? |
1599 |
|
if [ $retVal -eq 0 ] ; then |
1600 |
|
if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
1601 |
|
else |
1602 |
|
TMP=./genmk_$$ |
1603 |
|
fi |
1604 |
|
rm -f $TMP |
1605 |
|
#echo " temp files: $TMP.*" |
1606 |
|
|
1607 |
printf " getting local config information: " |
printf " getting local config information: " |
1608 |
if test -f $gm_local ; then |
if test -f $gm_local ; then |
1609 |
echo "using $gm_local" |
echo "using $gm_local" |
1696 |
|
|
1697 |
echo " getting AD_OPTFILE information:" |
echo " getting AD_OPTFILE information:" |
1698 |
if test "x${AD_OPTFILE}" = x ; then |
if test "x${AD_OPTFILE}" = x ; then |
1699 |
if test "x$MITGCM_AD_OF" = x ; then |
if test "x$MITGCM_AD_OF" != x ; then |
1700 |
|
AD_OPTFILE=$MITGCM_AD_OF |
1701 |
|
elif test "x$OPENAD" = x ; then |
1702 |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
1703 |
else |
else |
1704 |
AD_OPTFILE=$MITGCM_AD_OF |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad |
1705 |
fi |
fi |
1706 |
fi |
fi |
1707 |
if test "x${AD_OPTFILE}" != xNONE ; then |
if test "x${AD_OPTFILE}" != xNONE ; then |
2267 |
fi |
fi |
2268 |
|
|
2269 |
echo " applying DISABLE settings" |
echo " applying DISABLE settings" |
2270 |
echo "" > ./.tmp_pack |
echo "" > $TMP.pack |
2271 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
2272 |
echo $i >> ./.tmp_pack |
echo $i >> $TMP.pack |
2273 |
done |
done |
2274 |
for i in `grep "-" ./.tmp_pack` ; do |
for i in `grep "-" $TMP.pack` ; do |
2275 |
j=`echo $i | sed 's/[-]//'` |
j=`echo $i | sed 's/[-]//'` |
2276 |
DISABLE="$DISABLE $j" |
DISABLE="$DISABLE $j" |
2277 |
done |
done |
2289 |
done |
done |
2290 |
PACKAGES="$pack" |
PACKAGES="$pack" |
2291 |
echo " applying ENABLE settings" |
echo " applying ENABLE settings" |
2292 |
echo "" > ./.tmp_pack |
echo "" > $TMP.pack |
2293 |
PACKAGES="$PACKAGES $ENABLE" |
PACKAGES="$PACKAGES $ENABLE" |
2294 |
# Test if each explicitly referenced package exists |
# Test if each explicitly referenced package exists |
2295 |
for i in $PACKAGES ; do |
for i in $PACKAGES ; do |
2298 |
echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'" |
echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'" |
2299 |
exit 1 |
exit 1 |
2300 |
fi |
fi |
2301 |
echo $i >> ./.tmp_pack |
echo $i >> $TMP.pack |
2302 |
done |
done |
2303 |
PACKAGES= |
PACKAGES= |
2304 |
for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do |
for i in `grep -v "-" $TMP.pack | sort | uniq` ; do |
2305 |
PACKAGES="$PACKAGES $i" |
PACKAGES="$PACKAGES $i" |
2306 |
done |
done |
2307 |
rm -f ./.tmp_pack |
rm -f $TMP.pack |
2308 |
echo " packages are: $PACKAGES" |
echo " packages are: $PACKAGES" |
2309 |
|
|
2310 |
# Check for package MNC: if NetCDF is available, then build the MNC |
# Check for package MNC: if NetCDF is available, then build the MNC |
2374 |
fi |
fi |
2375 |
fi |
fi |
2376 |
|
|
2377 |
# Check for package RADTRANS: if LAPACK is not available, |
# Make sure the openad package is enabled if using OpenAD |
2378 |
# then issue a warning that the direct radtrans solver is not available. |
if test "x$OPENAD" != x ; then |
2379 |
if test "x$HAVE_LAPACK" != xt ; then |
echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1 |
|
echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1 |
|
2380 |
RETVAL=$? |
RETVAL=$? |
2381 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" != x0 ; then |
2382 |
cat <<EOF |
cat <<EOF |
|
********************************************************************* |
|
|
WARNING: the "radtrans" package was enabled but tests failed to |
|
|
compile LAPACK applications. This means that the direct radtrans |
|
|
solver is not available and compilation will fail if it is enabled. |
|
|
If you want to use the direct solver, please check that: |
|
2383 |
|
|
|
1) LAPACK is correctly installed for this compiler and |
|
|
2) the LIBS variable (within the "optfile") specifies the correct |
|
|
LAPACK library to link against. |
|
2384 |
********************************************************************* |
********************************************************************* |
2385 |
|
ERROR: when generating an adjoint with OpenAD, the openad package |
2386 |
|
must be enabled. Please add it to packages.conf. |
2387 |
|
********************************************************************* |
2388 |
|
|
2389 |
EOF |
EOF |
2390 |
|
exit 1 |
2391 |
fi |
fi |
2392 |
fi |
fi |
2393 |
|
|
2579 |
|
|
2580 |
# Here, we build the list of files to be "run through" the adjoint |
# Here, we build the list of files to be "run through" the adjoint |
2581 |
# compiler. |
# compiler. |
2582 |
if test -f ./adSrcFiles.tmp ; then |
if test -f $TMP.adSrcFiles ; then |
2583 |
rm -f ./adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
2584 |
fi |
fi |
2585 |
echo " Creating the list of files for the adjoint compiler." |
echo " Creating the list of files for the adjoint compiler." |
2586 |
touch adSrcFiles.tmp |
touch $TMP.adSrcFiles |
2587 |
for i in $SOURCEDIRS ; do |
for i in $SOURCEDIRS ; do |
2588 |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
2589 |
for j in $list_files ; do |
for j in $list_files ; do |
2590 |
cat $i/$j >> adSrcFiles.tmp |
cat $i/$j >> $TMP.adSrcFiles |
2591 |
done |
done |
2592 |
done |
done |
2593 |
if test ! "x"$FS = "x.f" ; then |
if test ! "x"$FS = "x.f" ; then |
2594 |
cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f |
cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f |
2595 |
mv -f adSrcFiles.tmp_f adSrcFiles.tmp |
mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles |
2596 |
fi |
fi |
2597 |
|
|
2598 |
echo |
echo |
2614 |
fi |
fi |
2615 |
|
|
2616 |
echo " Determining the list of source and include files" |
echo " Determining the list of source and include files" |
2617 |
rm -rf .links.tmp |
rm -rf $TMP.links |
2618 |
mkdir .links.tmp |
mkdir $TMP.links |
2619 |
touch .links.tmp/foo |
touch $TMP.links/foo |
2620 |
if test ! -r ".links.tmp/foo" ; then |
if test ! -r "$TMP.links/foo" ; then |
2621 |
echo |
echo |
2622 |
echo "ERROR : something is wrong with your directory permissions or" |
echo "ERROR : something is wrong with your directory permissions or" |
2623 |
echo " your user file-creation mask (\"umask\") since creating a" |
echo " your user file-creation mask (\"umask\") since creating a" |
2633 |
echo |
echo |
2634 |
exit 1 |
exit 1 |
2635 |
fi |
fi |
2636 |
rm -f .links.tmp/foo |
rm -f $TMP.links/foo |
2637 |
|
|
2638 |
if test "x$OPENAD" != x ; then |
if test "x$OPENAD" != x ; then |
2639 |
OAD_DONT_COMPILE="/dev/null" |
OAD_DONT_COMPILE="/dev/null" |
2642 |
OAD_CB2M_FILES="/dev/null" |
OAD_CB2M_FILES="/dev/null" |
2643 |
OADTOOLS="$TOOLSDIR/OAD_support" |
OADTOOLS="$TOOLSDIR/OAD_support" |
2644 |
echo " looking for dontCompile file: " |
echo " looking for dontCompile file: " |
2645 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2646 |
if test -r $i"/dontCompile" ; then |
if test -r $i"/dontCompile" ; then |
2647 |
OAD_DONT_COMPILE=$i"/dontCompile" |
OAD_DONT_COMPILE=$i"/dontCompile" |
2648 |
echo " found $OAD_DONT_COMPILE" |
echo " found $OAD_DONT_COMPILE" |
2650 |
fi |
fi |
2651 |
done |
done |
2652 |
echo " looking for dontTransform file: " |
echo " looking for dontTransform file: " |
2653 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2654 |
if test -r $i"/dontTransform" ; then |
if test -r $i"/dontTransform" ; then |
2655 |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
2656 |
echo " found $OAD_DONT_TRANSFORM" |
echo " found $OAD_DONT_TRANSFORM" |
2658 |
fi |
fi |
2659 |
done |
done |
2660 |
echo " looking for keepOriginal file: " |
echo " looking for keepOriginal file: " |
2661 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2662 |
if test -r $i"/keepOriginal" ; then |
if test -r $i"/keepOriginal" ; then |
2663 |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
2664 |
echo " found $OAD_KEEP_ORIGINAL" |
echo " found $OAD_KEEP_ORIGINAL" |
2666 |
fi |
fi |
2667 |
done |
done |
2668 |
echo " looking for cb2mFiles: " |
echo " looking for cb2mFiles: " |
2669 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2670 |
if test -r $i"/cb2mFiles" ; then |
if test -r $i"/cb2mFiles" ; then |
2671 |
OAD_CB2M_FILES=$i"/cb2mFiles" |
OAD_CB2M_FILES=$i"/cb2mFiles" |
2672 |
echo " found $OAD_CB2M_FILES" |
echo " found $OAD_CB2M_FILES" |
2676 |
echo " OpenAD exceptions: " |
echo " OpenAD exceptions: " |
2677 |
fi |
fi |
2678 |
|
|
2679 |
echo "# This section creates symbolic links" > srclinks.tmp |
echo "# This section creates symbolic links" > $TMP.srclinks |
2680 |
echo "" >> srclinks.tmp |
echo "" >> $TMP.srclinks |
2681 |
printf 'F77_SRC_FILES = ' > F77srclist.tmp |
printf 'F77_SRC_FILES = ' > $TMP.F77srclist |
2682 |
printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp |
printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist |
2683 |
printf 'C_SRC_FILES = ' > csrclist.tmp |
printf 'C_SRC_FILES = ' > $TMP.csrclist |
2684 |
printf 'F90_SRC_FILES = ' > F90srclist.tmp |
printf 'F90_SRC_FILES = ' > $TMP.F90srclist |
2685 |
printf 'H_SRC_FILES = ' > hsrclist.tmp |
printf 'H_SRC_FILES = ' > $TMP.hsrclist |
2686 |
printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp |
printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files |
2687 |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
2688 |
for d in $alldirs ; do |
for d in $alldirs ; do |
2689 |
deplist= |
deplist= |
2693 |
sfiles=`( echo $sfiles | grep -v _cb2m\. )` |
sfiles=`( echo $sfiles | grep -v _cb2m\. )` |
2694 |
fi |
fi |
2695 |
for sf in $sfiles ; do |
for sf in $sfiles ; do |
2696 |
if test ! -r ".links.tmp/$sf" ; then |
if test ! -r "$TMP.links/$sf" ; then |
2697 |
if test -f "$d/$sf" ; then |
if test -f "$d/$sf" ; then |
2698 |
ignore_f=f |
ignore_f=f |
2699 |
case $d/$sf in |
case $d/$sf in |
2718 |
if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then |
if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then |
2719 |
ignore_f=t |
ignore_f=t |
2720 |
else |
else |
2721 |
touch .links.tmp/$sf |
touch $TMP.links/$sf |
2722 |
deplist="$deplist $sf" |
deplist="$deplist $sf" |
2723 |
fi |
fi |
2724 |
;; |
;; |
2727 |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
2728 |
case $extn in |
case $extn in |
2729 |
F) |
F) |
2730 |
echo " \\" >> F77srclist.tmp |
echo " \\" >> $TMP.F77srclist |
2731 |
printf " $sf" >> F77srclist.tmp |
printf " $sf" >> $TMP.F77srclist |
2732 |
if test "x$OPENAD" != x ; then |
if test "x$OPENAD" = x ; then |
2733 |
|
basename=${sf%%.F} |
2734 |
|
isAD=`egrep ^$basename.f'[ ]*' $TMP.adSrcFiles` |
2735 |
|
if test -z "$isAD" ; then |
2736 |
|
echo " \\" >> $TMP.nonADF77srclist |
2737 |
|
printf " $sf" >> $TMP.nonADF77srclist |
2738 |
|
fi |
2739 |
|
else #- OpenAD case: |
2740 |
basename=${sf%%.F} |
basename=${sf%%.F} |
2741 |
isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp` |
isAD=`egrep ^$basename.f'[ ]*' $TMP.adSrcFiles` |
2742 |
if test -z "$isAD" ; then |
if test -z "$isAD" ; then |
2743 |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` |
2744 |
if test -z "$toBeIgnored" ; then |
if test -z "$toBeIgnored" ; then |
2745 |
echo " \\" >> nonADF77srclist.tmp |
echo " \\" >> $TMP.nonADF77srclist |
2746 |
printf " $sf" >> nonADF77srclist.tmp |
printf " $sf" >> $TMP.nonADF77srclist |
2747 |
else |
else |
2748 |
echo " not to be compiled : $sf" |
echo " not to be compiled : $sf" |
2749 |
fi |
fi |
2758 |
echo " original to be kept : $sf" |
echo " original to be kept : $sf" |
2759 |
fi |
fi |
2760 |
if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then |
if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then |
2761 |
echo " \\" >> nonADF77srclist.tmp |
echo " \\" >> $TMP.nonADF77srclist |
2762 |
printf " $sf" >> nonADF77srclist.tmp |
printf " $sf" >> $TMP.nonADF77srclist |
2763 |
fi |
fi |
2764 |
fi |
fi |
2765 |
fi |
fi |
2766 |
;; |
;; |
2767 |
F90) |
F90) |
2768 |
echo " \\" >> F90srclist.tmp |
echo " \\" >> $TMP.F90srclist |
2769 |
printf " $sf" >> F90srclist.tmp |
printf " $sf" >> $TMP.F90srclist |
2770 |
;; |
;; |
2771 |
c) |
c) |
2772 |
echo " \\" >> csrclist.tmp |
echo " \\" >> $TMP.csrclist |
2773 |
printf " $sf" >> csrclist.tmp |
printf " $sf" >> $TMP.csrclist |
2774 |
;; |
;; |
2775 |
h) |
h) |
2776 |
echo " \\" >> hsrclist.tmp |
echo " \\" >> $TMP.hsrclist |
2777 |
printf " $sf" >> hsrclist.tmp |
printf " $sf" >> $TMP.hsrclist |
2778 |
;; |
;; |
2779 |
flow) |
flow) |
2780 |
echo " \\" >> ad_flow_files.tmp |
echo " \\" >> $TMP.ad_flow_files |
2781 |
printf " $sf" >> ad_flow_files.tmp |
printf " $sf" >> $TMP.ad_flow_files |
2782 |
;; |
;; |
2783 |
esac |
esac |
2784 |
fi |
fi |
2787 |
done |
done |
2788 |
if test "x$deplist" != x ; then |
if test "x$deplist" != x ; then |
2789 |
if test "$d" != "." ; then |
if test "$d" != "." ; then |
2790 |
echo "" >> srclinks.tmp |
echo "" >> $TMP.srclinks |
2791 |
echo "# These files are linked from $d" >> srclinks.tmp |
echo "# These files are linked from $d" >> $TMP.srclinks |
2792 |
echo "$deplist :" >> srclinks.tmp |
echo "$deplist :" >> $TMP.srclinks |
2793 |
# We need to make sure that the link isn't already there. |
# We need to make sure that the link isn't already there. |
2794 |
# This may happen when make thinks that a header file has to be "remade" |
# This may happen when make thinks that a header file has to be "remade" |
2795 |
# because a module it depends on has changed. In this case we do nothing. |
# because a module it depends on has changed. In this case we do nothing. |
2796 |
printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp |
printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks |
2797 |
fi |
fi |
2798 |
fi |
fi |
2799 |
done |
done |
2800 |
rm -rf .links.tmp |
rm -rf $TMP.links |
2801 |
echo "" >> F77srclist.tmp |
echo "" >> $TMP.F77srclist |
2802 |
echo "" >> nonADF77srclist.tmp |
echo "" >> $TMP.nonADF77srclist |
2803 |
echo "" >> csrclist.tmp |
echo "" >> $TMP.csrclist |
2804 |
echo "" >> F90srclist.tmp |
echo "" >> $TMP.F90srclist |
2805 |
echo "" >> hsrclist.tmp |
echo "" >> $TMP.hsrclist |
2806 |
echo "" >> ad_flow_files.tmp |
echo "" >> $TMP.ad_flow_files |
2807 |
|
|
2808 |
CMDLINE=$0 |
CMDLINE=$0 |
2809 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
2894 |
CC = ${CC} |
CC = ${CC} |
2895 |
# Link editor |
# Link editor |
2896 |
LINK = ${LINK} ${LDADD} |
LINK = ${LINK} ${LDADD} |
2897 |
|
export $OPENAD_DIVA |
2898 |
|
|
2899 |
# Defines for CPP |
# Defines for CPP |
2900 |
DEFINES = ${DEFINES} |
DEFINES = ${DEFINES} |
2906 |
KFLAGS1 = ${KFLAGS1} |
KFLAGS1 = ${KFLAGS1} |
2907 |
KFLAGS2 = ${KFLAGS2} |
KFLAGS2 = ${KFLAGS2} |
2908 |
# Optim./debug for FC |
# Optim./debug for FC |
2909 |
FFLAGS = ${FFLAGS} ${FEXTRAFLAGS} |
FFLAGS = ${FFLAGS} |
2910 |
FOPTIM = ${FOPTIM} |
FOPTIM = ${FOPTIM} ${FEXTRAFLAGS} |
2911 |
# Optim./debug for FC |
# Optim./debug for FC |
2912 |
F90FLAGS = ${F90FLAGS} |
F90FLAGS = ${F90FLAGS} |
2913 |
F90OPTIM = ${F90OPTIM} |
F90OPTIM = ${F90OPTIM} |
2926 |
|
|
2927 |
EOF |
EOF |
2928 |
|
|
2929 |
cat F77srclist.tmp >> $MAKEFILE |
cat $TMP.F77srclist >> $MAKEFILE |
2930 |
cat nonADF77srclist.tmp >> $MAKEFILE |
cat $TMP.nonADF77srclist >> $MAKEFILE |
2931 |
cat csrclist.tmp >> $MAKEFILE |
cat $TMP.csrclist >> $MAKEFILE |
2932 |
cat F90srclist.tmp >> $MAKEFILE |
cat $TMP.F90srclist >> $MAKEFILE |
2933 |
cat hsrclist.tmp >> $MAKEFILE |
cat $TMP.hsrclist >> $MAKEFILE |
2934 |
cat ad_flow_files.tmp >> $MAKEFILE |
cat $TMP.ad_flow_files >> $MAKEFILE |
2935 |
|
|
2936 |
rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp |
rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files |
2937 |
|
|
2938 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2939 |
|
|
2983 |
|
|
2984 |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
2985 |
|
|
|
output.txt: \$(EXECUTABLE) |
|
|
@printf 'running ... ' |
|
|
@\$(EXECUTABLE) > \$@ |
|
|
|
|
2986 |
# remove most of the files that "make" generates |
# remove most of the files that "make" generates |
2987 |
clean: |
clean: |
2988 |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
3126 |
echo " Add the source list for AD code generation" |
echo " Add the source list for AD code generation" |
3127 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3128 |
printf "AD_FILES = " >> $MAKEFILE |
printf "AD_FILES = " >> $MAKEFILE |
3129 |
AD_FILES=`cat adSrcFiles.tmp` |
AD_FILES=`cat $TMP.adSrcFiles` |
3130 |
for i in $AD_FILES ; do |
for i in $AD_FILES ; do |
3131 |
echo " \\" >> $MAKEFILE |
echo " \\" >> $MAKEFILE |
3132 |
printf " $i" >> $MAKEFILE |
printf " $i" >> $MAKEFILE |
3133 |
done |
done |
3134 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3135 |
rm -f adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
3136 |
|
|
3137 |
|
if test $CAT_SRC_FOR_TAF = 0 ; then |
3138 |
|
cat >>$MAKEFILE <<EOF |
3139 |
|
|
3140 |
|
# ... Utilities ... |
3141 |
|
remove_comments: |
3142 |
|
sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES) |
3143 |
|
@-rm -f \$(AD_FILES:.$FS=.$FS.bak) |
3144 |
|
adj_sed: |
3145 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS) |
3146 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak) |
3147 |
|
ftl_sed: |
3148 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS) |
3149 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak) |
3150 |
|
adobjfiles: \$(AD_FILES:.$FS=_ad.o) |
3151 |
|
ftlobjfiles: \$(AD_FILES:.$FS=_tl.o) |
3152 |
|
EOF |
3153 |
|
fi |
3154 |
|
|
3155 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3156 |
|
|
3166 |
@-rm -f ad_config.template |
@-rm -f ad_config.template |
3167 |
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3168 |
|
|
3169 |
ad_input_code.$FS: \$(F77_SRC_FILES) \$(AD_FLOW_FILES) |
ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES) |
3170 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3171 |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3172 |
@-rm -f ad_config.template |
@-rm -f ad_config.template |
3173 |
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3174 |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3175 |
cat \$(FLOWFILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
3176 |
|
|
3177 |
ad_taf_output.$FS: ad_input_code.$FS |
adtafonly: |
3178 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3179 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3180 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3181 |
|
|
3182 |
adtafonly: |
EOF |
3183 |
|
|
3184 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3185 |
|
cat >>$MAKEFILE <<EOF |
3186 |
|
# ... send 1 file to TAF ... |
3187 |
|
ad_taf_output.$FS: ad_input_code.$FS |
3188 |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
3189 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3190 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3191 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3192 |
|
|
3193 |
\$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES:.c=.o) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(EMBEDDED_FILES) |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3194 |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ad_taf_output.o \$(LIBS) |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3195 |
|
|
3196 |
ad_tamc_output.$FS: ad_input_code.$FS |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
|
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
|
3197 |
|
|
3198 |
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
EOF |
|
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
|
3199 |
|
|
3200 |
|
else |
3201 |
|
cat >>$MAKEFILE <<EOF |
3202 |
|
# ... send multiple files to TAF ... |
3203 |
|
ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3204 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3205 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3206 |
|
@-rm -f ad_config.template |
3207 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3208 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3209 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo '' |
3210 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3211 |
|
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES) |
3212 |
|
\$(MAKE) -f \$(MAKEFILE) adj_sed |
3213 |
|
cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS |
3214 |
|
|
3215 |
|
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3216 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3217 |
|
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3218 |
|
|
3219 |
|
adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
3220 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3221 |
|
|
3222 |
|
EOF |
3223 |
|
fi |
3224 |
|
|
3225 |
|
cat >>$MAKEFILE <<EOF |
3226 |
adonlyfwd: |
adonlyfwd: |
3227 |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
3228 |
|
|
3229 |
adtrick: |
adtrick: |
3230 |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
3231 |
|
|
3232 |
adobj: ad_taf_output.o \$(OBJFILES) |
ad_tamc_output.$FS: ad_input_code.$FS |
3233 |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
3234 |
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
3235 |
|
|
3236 |
|
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
3237 |
|
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
3238 |
|
|
3239 |
# ... FTL ... |
# ... FTL ... |
3240 |
ftlall: ftl_exe_target |
ftlall: ftl_exe_target |
3248 |
@-rm -f ad_config.template |
@-rm -f ad_config.template |
3249 |
\$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL) |
\$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL) |
3250 |
|
|
3251 |
ftl_input_code.$FS: \$(F77_SRC_FILES) |
ftl_input_code.$FS: \$(AD_FILES) |
3252 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3253 |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3254 |
@-rm -f ad_config.template |
@-rm -f ad_config.template |
3255 |
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3256 |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3257 |
cat \$(AD_FLOW_FILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
3258 |
|
|
3259 |
ftl_taf_output.$FS: ftl_input_code.$FS |
ftltafonly: |
3260 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3261 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3262 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3263 |
|
|
3264 |
ftltafonly: |
EOF |
3265 |
|
|
3266 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3267 |
|
cat >>$MAKEFILE <<EOF |
3268 |
|
# ... send 1 file to TAF ... |
3269 |
|
ftl_taf_output.$FS: ftl_input_code.$FS |
3270 |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
3271 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3272 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3273 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3274 |
|
|
3275 |
\$(EXE_FTL): ftl_taf_output.o \$(C_SRC_FILES:.c=.o) |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3276 |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ftl_taf_output.o \$(LIBS) |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3277 |
|
|
3278 |
|
EOF |
3279 |
|
|
3280 |
|
else |
3281 |
|
cat >>$MAKEFILE <<EOF |
3282 |
|
# ... send multiple files to TAF ... |
3283 |
|
ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3284 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3285 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3286 |
|
@-rm -f ad_config.template |
3287 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3288 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3289 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo '' |
3290 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3291 |
|
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES) |
3292 |
|
\$(MAKE) -f \$(MAKEFILE) ftl_sed |
3293 |
|
cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS |
3294 |
|
|
3295 |
|
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3296 |
|
\$(MAKE) -f \$(MAKEFILE) ftlobjfiles |
3297 |
|
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3298 |
|
|
3299 |
|
EOF |
3300 |
|
fi |
3301 |
|
|
3302 |
|
cat >>$MAKEFILE <<EOF |
3303 |
ftl_tamc_output.$FS: ftl_input_code.$FS |
ftl_tamc_output.$FS: ftl_input_code.$FS |
3304 |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
3305 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
3342 |
# ============ begin OpenAD specific section ============== |
# ============ begin OpenAD specific section ============== |
3343 |
|
|
3344 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3345 |
|
# ... OpenAD ... |
3346 |
|
|
3347 |
# all the source files linked from the various locations: |
# all the source files linked from the various locations: |
3348 |
ALL_LINKED_FILES= \ |
ALL_LINKED_FILES= \ |
3382 |
echo " \\" >> $MAKEFILE |
echo " \\" >> $MAKEFILE |
3383 |
printf " ${i}_mod.f$FS90" >> $MAKEFILE |
printf " ${i}_mod.f$FS90" >> $MAKEFILE |
3384 |
done |
done |
3385 |
AD_FILES=`cat adSrcFiles.tmp` |
AD_FILES=`cat $TMP.adSrcFiles` |
3386 |
for i in $AD_FILES ; do |
for i in $AD_FILES ; do |
3387 |
basename=${i%%.f} |
basename=${i%%.f} |
3388 |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}` |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}` |
3392 |
fi |
fi |
3393 |
done |
done |
3394 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3395 |
rm -f adSrcFiles.tmp |
rm -f $TMP.adSrcFiles |
3396 |
|
|
3397 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3398 |
|
|
3399 |
adAll: \$(EXE_AD) |
adAll: ad_exe_target |
3400 |
.PHONY: adAll |
.PHONY: adAll |
3401 |
|
|
3402 |
|
ad_exe_target: |
3403 |
|
@echo Update AD_CONFIG.h and make \$(EXE_AD) |
3404 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3405 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3406 |
|
@-rm -f ad_config.template |
3407 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3408 |
|
|
3409 |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
3410 |
|
|
3411 |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
3422 |
OAD_cp.F90 \ |
OAD_cp.F90 \ |
3423 |
OAD_rev.F90 \ |
OAD_rev.F90 \ |
3424 |
OAD_tape.F90 \ |
OAD_tape.F90 \ |
3425 |
|
OAD_regular_cp.F90 \ |
3426 |
revolve.F90 |
revolve.F90 |
3427 |
|
|
3428 |
OPENAD_SUPPORT_C_SRC_FILES = \ |
OPENAD_SUPPORT_C_SRC_FILES = \ |
3464 |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
3465 |
.PHONY: small_f |
.PHONY: small_f |
3466 |
|
|
|
ad_output.txt: \$(EXE_AD) |
|
|
@printf 'linking data files ... ' |
|
|
\$(LN) -f ../input_ad/data* ../input_ad/eedata . |
|
|
\$(LN) -f ../../global_ocean.90x40x15/input/*.bin . |
|
|
@printf 'running ... ' |
|
|
@./\$(EXE_AD) > \$@ |
|
|
|
|
3467 |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
3468 |
cat \$^ > \$@ |
cat \$^ > \$@ |
3469 |
|
|
3499 |
ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash |
ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash |
3500 |
\${OADTOOLS}/insertTemplateDir.bash \$< \$@ |
\${OADTOOLS}/insertTemplateDir.bash \$< \$@ |
3501 |
|
|
3502 |
PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F |
PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F |
3503 |
# postprocess F' |
# postprocess F' |
3504 |
postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90 |
postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90 |
3505 |
\${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$< |
\${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$< |
3506 |
# the target is a placeholder to trigger a single execution of the rule |
# the target is a placeholder to trigger a single execution of the rule |
3507 |
touch \$@ |
touch \$@ |
3508 |
# put this so make knows about the postprocessing output |
# put this so make knows about the postprocessing output |
3513 |
\$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . |
\$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . |
3514 |
|
|
3515 |
# link the support files: |
# link the support files: |
3516 |
\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES): |
\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS): |
3517 |
\$(LN) \${OADTOOLS}/\$@ . |
\$(LN) \${OADTOOLS}/\$@ . |
3518 |
|
|
3519 |
AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f) |
AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag |
3520 |
|
|
3521 |
# ============ end OpenAD specific section ============== |
# ============ end OpenAD specific section ============== |
3522 |
|
|
3552 |
done |
done |
3553 |
|
|
3554 |
echo " Add rules for links" |
echo " Add rules for links" |
3555 |
cat srclinks.tmp >> $MAKEFILE |
cat $TMP.srclinks >> $MAKEFILE |
3556 |
rm -f srclinks.tmp |
rm -f $TMP.srclinks |
3557 |
|
|
3558 |
echo " Adding makedepend marker" |
echo " Adding makedepend marker" |
3559 |
printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE |
printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE |