602 |
fi |
fi |
603 |
} |
} |
604 |
|
|
605 |
|
# Do a local copy of MPI headers files (in local dir ./mpi_headers/) after |
606 |
|
# checking for additional included headers (in case of chain of included header) |
607 |
|
mpi_headers_do_local_copy() { |
608 |
|
|
609 |
|
dBug=0 |
610 |
|
#----- check for additional headers (chain of included headers) |
611 |
|
listIni=$MPI_HEADER_FILES |
612 |
|
echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1 |
613 |
|
outp=$? |
614 |
|
#- always check mpif.h (the only mpi-header included in standard MITgcm code) |
615 |
|
if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi |
616 |
|
if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi |
617 |
|
doCheck=1 ; list2copy='' ; list2check=$listIni |
618 |
|
while test $doCheck = 1 ; do |
619 |
|
newList='' |
620 |
|
for i in $list2check ; do |
621 |
|
if test -f $MPIINCLUDEDIR/$i ; then |
622 |
|
newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \ |
623 |
|
sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g" -e 's/\"//g'` |
624 |
|
if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi |
625 |
|
for j in $newInc ; do |
626 |
|
echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1 |
627 |
|
outp=$? |
628 |
|
if test $outp != 0 ; then |
629 |
|
if test $dBug = 1 ; then echo -n " ; adding $j" ; fi |
630 |
|
newList="$newList $j" |
631 |
|
fi |
632 |
|
done |
633 |
|
if test $dBug = 1 ; then echo "" ; fi |
634 |
|
fi |
635 |
|
done |
636 |
|
if test "x$newList" = x ; then doCheck=0 |
637 |
|
else list2check=$newList ; list2copy="$list2copy $newList" |
638 |
|
fi |
639 |
|
done |
640 |
|
list2copy="$MPI_HEADER_FILES $list2copy" |
641 |
|
if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi |
642 |
|
#----- make local copy and update LOCAL_MPI_HEADERS (if not already set) |
643 |
|
mkListInc=0 |
644 |
|
for i in $list2copy ; do |
645 |
|
if test -f $MPIINCLUDEDIR/$i ; then |
646 |
|
cp -p $MPIINCLUDEDIR/$i ./mpi_headers |
647 |
|
if test $i = 'mpif.h' ; then |
648 |
|
perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h |
649 |
|
fi |
650 |
|
if test $mkListInc = 1 ; then |
651 |
|
LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i" |
652 |
|
fi |
653 |
|
if test "x$LOCAL_MPI_HEADERS" = x ; then |
654 |
|
LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=1 |
655 |
|
fi |
656 |
|
fi |
657 |
|
done |
658 |
|
} |
659 |
|
|
660 |
# Parse the package dependency information |
# Parse the package dependency information |
661 |
get_pdepend_list() { |
get_pdepend_list() { |
662 |
|
|
1317 |
SVD_TAMC_FLAGS= |
SVD_TAMC_FLAGS= |
1318 |
TAMC_EXTRA= |
TAMC_EXTRA= |
1319 |
|
|
1320 |
|
DIVA= |
1321 |
|
MPIINCLUDEDIR= |
1322 |
|
MPI_HEADER_FILES= |
1323 |
|
LOCAL_MPI_HEADERS= |
1324 |
|
|
1325 |
# The following state can be set directly by command-line switches |
# The following state can be set directly by command-line switches |
1326 |
gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE" |
gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE" |
1327 |
gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4" |
gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4" |
1337 |
# The following are all related to adjoint/tangent-linear stuff |
# The following are all related to adjoint/tangent-linear stuff |
1338 |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
1339 |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
1340 |
gm_s12="TAF_EXTRA TAMC_EXTRA" |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
1341 |
|
|
1342 |
gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8" |
gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8" |
1343 |
gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12" |
gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12" |
2558 |
fi |
fi |
2559 |
done |
done |
2560 |
|
|
2561 |
if test ! "x$DIVA" = x ; then |
if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then |
2562 |
echo " Creating the pseudo-MPI include directory" |
if test ! "x$MPIINCLUDEDIR" = x ; then |
2563 |
INCLUDES="-I./mpi_headers $INCLUDES" |
if test -d $MPIINCLUDEDIR ; then |
2564 |
rm -rf ./mpi_headers |
echo " Creating the pseudo-MPI include directory" |
2565 |
mkdir -p ./mpi_headers |
INCLUDES="-I./mpi_headers $INCLUDES" |
2566 |
|
rm -rf ./mpi_headers |
2567 |
if test "x$MPIINCLUDEDIR" = x ; then |
mkdir -p ./mpi_headers |
2568 |
if test "x$MPIHOME" = x ; then |
# Do a local copy of MPI headers files (in local dir ./mpi_headers/) after |
2569 |
MPIHOME='/usr' |
# checking for additional included headers (in case of chain of included |
2570 |
fi |
# header); also set LOCAL_MPI_HEADERS (if not already set) |
2571 |
MPIINCLUDEDIR='$MPIHOME/include' |
mpi_headers_do_local_copy |
|
fi |
|
|
|
|
|
if test -r $MPIINCLUDEDIR/mpif.h ; then |
|
|
for i in $MPI_HEADER_FILES; do |
|
|
cp -p $MPIINCLUDEDIR/$i ./mpi_headers |
|
|
done |
|
|
|
|
|
perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h |
|
2572 |
else |
else |
2573 |
echo " We cannot create a copy of mpif.h!" |
echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a dir" |
2574 |
|
echo "WARNING: ==> cannot create pseudo-MPI include directory" |
2575 |
# exit -1 |
# exit -1 |
2576 |
fi |
fi |
2577 |
|
fi |
2578 |
fi |
fi |
2579 |
|
|
2580 |
echo " Determining the list of source and include files" |
echo " Determining the list of source and include files" |
2960 |
@\$(MAKE) -f \$(MAKEFILE) cleanlinks |
@\$(MAKE) -f \$(MAKEFILE) cleanlinks |
2961 |
-rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old |
-rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old |
2962 |
-rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log |
-rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log |
|
-rm -f genmake_warnings genmake_errors make.log |
|
2963 |
|
|
2964 |
# remove also the executable, files that "genmake2" generates (except Makefile) |
# remove also the executable, files that "genmake2" generates (except Makefile) |
2965 |
# and output from a run (plus log files from testreport) |
# and output from a run (plus log files from testreport) |
2968 |
-rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak |
-rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak |
2969 |
-rm -f $LOGFILE genmake_state genmake_*optfile |
-rm -f $LOGFILE genmake_state genmake_*optfile |
2970 |
-rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
-rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
2971 |
|
-rm -rf mpi_headers mnc_test_* |
2972 |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
2973 |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
2974 |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
2975 |
-rm -f *.txt STD* *diagnostics.log datetime |
-rm -f *.txt STD* *diagnostics.log datetime |
2976 |
-rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
-rm -f *_MIT_CE_000.opt0000 costfunction*0000 costfinal |
2977 |
-rm -rf mnc_test_* |
-rm -f divided.ctrl snapshot* oad_cp.000.[0-9][0-9][0-9][0-9][0-9] |
2978 |
|
|
2979 |
makefile: |
makefile: |
2980 |
$THIS_SCRIPT $G2ARGS |
$THIS_SCRIPT $G2ARGS |
3071 |
|
|
3072 |
TAF_EXTRA = ${TAF_EXTRA} |
TAF_EXTRA = ${TAF_EXTRA} |
3073 |
TAMC_EXTRA = ${TAMC_EXTRA} |
TAMC_EXTRA = ${TAMC_EXTRA} |
3074 |
|
LOCAL_MPI_HEADERS = ${LOCAL_MPI_HEADERS} |
3075 |
|
|
3076 |
EOF |
EOF |
3077 |
|
|