601 |
|
|
602 |
-gsl | --gsl |
-gsl | --gsl |
603 |
Use GSL to control floating point rounding and precision |
Use GSL to control floating point rounding and precision |
604 |
|
-devel | --devel |
605 |
|
Add additional warning and debugging flags for development |
606 |
|
|
607 |
-mpi | --mpi |
-mpi | --mpi |
608 |
Include MPI header files and link to MPI libraries |
Include MPI header files and link to MPI libraries |
746 |
*curtim = *curtim/1.E6; |
*curtim = *curtim/1.E6; |
747 |
} |
} |
748 |
EOF |
EOF |
749 |
make genmake_tc_1.o >> genmake_warnings 2>&1 |
COMM="$CC $CFLAGS -c genmake_tc_1.c" |
750 |
|
echo $COMM >> genmake_warnings |
751 |
|
$COMM >> genmake_warnings 2>&1 |
752 |
RET_C=$? |
RET_C=$? |
753 |
cat <<EOF > genmake_tc_2.$FS |
cat <<EOF > genmake_tc_2.$FS |
754 |
program hello |
program hello |
758 |
print *," HELLO WORLD", wtime |
print *," HELLO WORLD", wtime |
759 |
end |
end |
760 |
EOF |
EOF |
761 |
$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1 |
COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o" |
762 |
|
echo $COMM >> genmake_warnings |
763 |
|
$COMM >> genmake_warnings 2>&1 |
764 |
RET_F=$? |
RET_F=$? |
765 |
test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1 |
test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1 |
766 |
RETVAL=$? |
RETVAL=$? |
807 |
return; |
return; |
808 |
} |
} |
809 |
EOF |
EOF |
810 |
make genmake_tc_1.o >> genmake_warnings 2>&1 |
COMM="$CC $CFLAGS -c genmake_tc_1.c" |
811 |
|
echo $COMM >> genmake_warnings |
812 |
|
$COMM >> genmake_warnings 2>&1 |
813 |
RET_C=$? |
RET_C=$? |
814 |
cat <<EOF > genmake_tc_2.$FS |
cat <<EOF > genmake_tc_2.$FS |
815 |
program hello |
program hello |
857 |
return; |
return; |
858 |
} |
} |
859 |
EOF |
EOF |
860 |
make genmake_tc_1.o >> genmake_warnings 2>&1 |
COMM="$CC $CFLAGS -c genmake_tc_1.c" |
861 |
|
echo $COMM >> genmake_warnings |
862 |
|
$COMM >> genmake_warnings 2>&1 |
863 |
RET_C=$? |
RET_C=$? |
864 |
cat <<EOF > genmake_tc_2.$FS |
cat <<EOF > genmake_tc_2.$FS |
865 |
program hello |
program hello |
903 |
*nbyte = -1; |
*nbyte = -1; |
904 |
} |
} |
905 |
EOF |
EOF |
906 |
make genmake_tc_1.o >> genmake_tc.log 2>&1 |
COMM="$CC $CFLAGS -c genmake_tc_1.c" |
907 |
|
echo $COMM >> genmake_warnings |
908 |
|
$COMM >> genmake_tc.log 2>&1 |
909 |
RET_C=$? |
RET_C=$? |
910 |
cat <<EOF > genmake_tc_2.$FS |
cat <<EOF > genmake_tc_2.$FS |
911 |
program hello |
program hello |
995 |
if test "x$RET_COMPILE" = x0 ; then |
if test "x$RET_COMPILE" = x0 ; then |
996 |
LIBS="$LIBS -lnetcdf" |
LIBS="$LIBS -lnetcdf" |
997 |
HAVE_NETCDF=t |
HAVE_NETCDF=t |
998 |
|
else |
999 |
|
# try again with "-lnetcdff" added to the libs |
1000 |
|
echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log |
1001 |
|
echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log |
1002 |
|
echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log |
1003 |
|
echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log |
1004 |
|
cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \ |
1005 |
|
&& $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ |
1006 |
|
&& $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1 |
1007 |
|
RET_COMPILE=$? |
1008 |
|
cat genmake_tnc.log >> genmake_warnings |
1009 |
|
if test "x$RET_COMPILE" = x0 ; then |
1010 |
|
LIBS="$LIBS -lnetcdff -lnetcdf" |
1011 |
|
HAVE_NETCDF=t |
1012 |
|
fi |
1013 |
fi |
fi |
1014 |
fi |
fi |
1015 |
rm -f genmake_tnc* |
rm -f genmake_tnc* |
1045 |
INCLUDES="-I. $INCLUDES" |
INCLUDES="-I. $INCLUDES" |
1046 |
FFLAGS= |
FFLAGS= |
1047 |
FOPTIM= |
FOPTIM= |
1048 |
|
FEXTRAFLAGS= |
1049 |
|
USE_EXTENDED_SRC= |
1050 |
|
EXTENDED_SRC_FLAG= |
1051 |
CFLAGS= |
CFLAGS= |
1052 |
KFLAGS1= |
KFLAGS1= |
1053 |
KFLAGS2= |
KFLAGS2= |
1066 |
PCL= |
PCL= |
1067 |
HPMT= |
HPMT= |
1068 |
GSL= |
GSL= |
1069 |
|
DEVEL= |
1070 |
HAVE_TEST_L= |
HAVE_TEST_L= |
1071 |
|
|
1072 |
# DEFINES checked by test compilation or command-line |
# DEFINES checked by test compilation or command-line |
1125 |
|
|
1126 |
# The following state can be set directly by command-line switches |
# The following state can be set directly by command-line switches |
1127 |
gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE" |
gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE" |
1128 |
gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS" |
gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS" |
1129 |
|
|
1130 |
# The following state is not directly set by command-line switches |
# The following state is not directly set by command-line switches |
1131 |
gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM " |
gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS" |
1132 |
gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS" |
gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS" |
1133 |
gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE" |
gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE" |
1134 |
gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF" |
gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF" |
1155 |
|
|
1156 |
echo "=== Processing options files and arguments ===" |
echo "=== Processing options files and arguments ===" |
1157 |
gm_local="genmake_local" |
gm_local="genmake_local" |
|
for i in . $MODS ; do |
|
|
if test -r $i/$gm_local ; then |
|
|
. $i/$gm_local |
|
|
break |
|
|
fi |
|
|
done |
|
1158 |
printf " getting local config information: " |
printf " getting local config information: " |
1159 |
if test -f $gm_local ; then |
if test -f $gm_local ; then |
1160 |
echo "using $gm_local" |
echo "using $gm_local" |
1317 |
-gsl | --gsl) |
-gsl | --gsl) |
1318 |
GSL=true ;; |
GSL=true ;; |
1319 |
|
|
1320 |
|
-devel | --devel) |
1321 |
|
DEVEL=true ;; |
1322 |
|
|
1323 |
-mpi | --mpi) |
-mpi | --mpi) |
1324 |
MPI=true ;; |
MPI=true ;; |
1325 |
-mpi=* | --mpi=*) |
-mpi=* | --mpi=*) |
1368 |
if test -f ./.genmakerc ; then |
if test -f ./.genmakerc ; then |
1369 |
echo |
echo |
1370 |
echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" |
echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" |
1371 |
echo " file. This file format is no longer supported. Please see:" |
echo " file. This file format is no longer supported. For directions on" |
1372 |
echo |
echo " how to setup and use the new \"genmake2\" script, please see:" |
1373 |
echo " http://mitgcm.org/devel_HOWTO/" |
echo " http://mitgcm.org/devel_HOWTO/" |
1374 |
echo |
echo " and send an email to MITgcm-support@mitgcm.org if you need help." |
1375 |
echo " for directions on how to setup and use the new \"genmake2\" input" |
echo "WARNING: ignore \"./.genmakerc\" and continue." |
|
echo " files and send an email to MITgcm-support@mitgcm.org if you want help." |
|
1376 |
echo |
echo |
1377 |
fi |
fi |
1378 |
|
|
1404 |
fi |
fi |
1405 |
|
|
1406 |
# Find the MITgcm ${THISVER} |
# Find the MITgcm ${THISVER} |
1407 |
if test -f "${ROOTDIR}/doc/tag-index" ; then |
version_file="${ROOTDIR}/doc/tag-index" |
1408 |
THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1` |
if test -f $version_file ; then |
1409 |
|
THISVER=`grep '^checkpoint' $version_file | head -1` |
1410 |
|
#- remove ./BUILD_INFO.h file if older than version_file |
1411 |
|
if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then |
1412 |
|
echo " remove ./BUILD_INFO.h (older than ${version_file})" |
1413 |
|
rm -f ./BUILD_INFO.h |
1414 |
|
fi |
1415 |
fi |
fi |
1416 |
|
|
1417 |
if test "x$MAKEFILE" = x ; then |
if test "x$MAKEFILE" = x ; then |
1575 |
else |
else |
1576 |
DEFINES="$DEFINES -DTIME_PER_TIMESTEP" |
DEFINES="$DEFINES -DTIME_PER_TIMESTEP" |
1577 |
fi |
fi |
1578 |
|
PACKAGES="$PACKAGES showflops" |
1579 |
fi |
fi |
1580 |
if test ! "x$PAPIS" = x ; then |
if test ! "x$PAPIS" = x ; then |
1581 |
echo " Turning on PAPI flop summary per timestep" |
echo " Turning on PAPI flop summary per timestep" |
1587 |
fi |
fi |
1588 |
INCLUDES="$INCLUDES $PAPIINC" |
INCLUDES="$INCLUDES $PAPIINC" |
1589 |
LIBS="$LIBS $PAPILIB" |
LIBS="$LIBS $PAPILIB" |
1590 |
|
PACKAGES="$PACKAGES showflops" |
1591 |
fi |
fi |
1592 |
if test ! "x$PCLS" = x ; then |
if test ! "x$PCLS" = x ; then |
1593 |
echo " Turning on PCL counter summary per timestep" |
echo " Turning on PCL counter summary per timestep" |
1599 |
fi |
fi |
1600 |
INCLUDES="$INCLUDES $PCLINC" |
INCLUDES="$INCLUDES $PCLINC" |
1601 |
LIBS="$LIBS $PCLLIB" |
LIBS="$LIBS $PCLLIB" |
1602 |
|
PACKAGES="$PACKAGES showflops" |
1603 |
fi |
fi |
1604 |
if test ! "x$PAPI" = x ; then |
if test ! "x$PAPI" = x ; then |
1605 |
if test ! "x$PAPIS" = x ; then |
if test ! "x$PAPIS" = x ; then |
1648 |
INCLUDES="$INCLUDES $GSLINC" |
INCLUDES="$INCLUDES $GSLINC" |
1649 |
LIBS="$LIBS $GSLLIB" |
LIBS="$LIBS $GSLLIB" |
1650 |
fi |
fi |
1651 |
|
#- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS : |
1652 |
|
if test ! "x$USE_EXTENDED_SRC" = x ; then |
1653 |
|
FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG" |
1654 |
|
F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG" |
1655 |
|
fi |
1656 |
|
|
1657 |
printf "\n=== Checking system libraries ===\n" |
printf "\n=== Checking system libraries ===\n" |
1658 |
printf " Do we have the system() command using $FC... " |
printf " Do we have the system() command using $FC... " |
1984 |
rm -f ./.tmp_pack |
rm -f ./.tmp_pack |
1985 |
echo " packages are: $PACKAGES" |
echo " packages are: $PACKAGES" |
1986 |
|
|
1987 |
# Check availability of NetCDF and then either build the MNC template |
# Check for package MNC: if NetCDF is available, then build the MNC |
1988 |
# files or delete mnc from the list of available packages. |
# template files ; otherwise, delete mnc from the list of packages. |
1989 |
echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1 |
echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1 |
1990 |
RETVAL=$? |
RETVAL=$? |
1991 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" = x0 ; then |
2019 |
fi |
fi |
2020 |
fi |
fi |
2021 |
|
|
2022 |
|
# Check for package PROFILES: if NetCDF is not available, |
2023 |
|
# then delete profiles from the list of available packages. |
2024 |
|
echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1 |
2025 |
|
RETVAL=$? |
2026 |
|
if test "x$RETVAL" = x0 ; then |
2027 |
|
if test "x$HAVE_NETCDF" != xt ; then |
2028 |
|
cat <<EOF |
2029 |
|
|
2030 |
|
********************************************************************* |
2031 |
|
WARNING: the "profiles" package was enabled but tests failed to |
2032 |
|
compile NetCDF applications. Please check that: |
2033 |
|
|
2034 |
|
1) NetCDF is correctly installed for this compiler and |
2035 |
|
2) the LIBS variable (within the "optfile") specifies the correct |
2036 |
|
NetCDF library to link against. |
2037 |
|
|
2038 |
|
Due to this failure, the "profiles" package is now DISABLED. |
2039 |
|
********************************************************************* |
2040 |
|
|
2041 |
|
EOF |
2042 |
|
PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'` |
2043 |
|
DISABLE="$DISABLE profiles" |
2044 |
|
fi |
2045 |
|
fi |
2046 |
|
|
2047 |
echo " applying package dependency rules" |
echo " applying package dependency rules" |
2048 |
ck= |
ck= |
2049 |
while test "x$ck" != xtt ; do |
while test "x$ck" != xtt ; do |
2050 |
i=0 |
i=0 |
2051 |
# rtot=${#PNAME[@]} |
# rtot=${#PNAME[@]} |
2052 |
rtot=$nname |
rtot=$nname |
2053 |
while test $i -lt $rtot ; do |
while test $i -le $rtot ; do |
2054 |
|
|
2055 |
# Is $pname in the current $PACKAGES list? |
# Is $pname in the current $PACKAGES list? |
2056 |
# pname=${PNAME[$i]} |
# pname=${PNAME[$i]} |
2084 |
|
|
2085 |
# Do we need to add $dname according to the dependency rules? |
# Do we need to add $dname according to the dependency rules? |
2086 |
if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then |
if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then |
2087 |
|
#echo " " $pname ": need to add :" $dname |
2088 |
in_dis="f" |
in_dis="f" |
2089 |
for dis in $DISABLE ; do |
for dis in $DISABLE ; do |
2090 |
if test "x$dis" = "x$dname" ; then |
if test "x$dis" = "x$dname" ; then |
2229 |
|
|
2230 |
# Here, we build the list of files to be "run through" the adjoint |
# Here, we build the list of files to be "run through" the adjoint |
2231 |
# compiler. |
# compiler. |
2232 |
if test -f ./ad_files ; then |
if test -f ./adSrcFiles.tmp ; then |
2233 |
rm -f ./ad_files |
rm -f ./adSrcFiles.tmp |
2234 |
fi |
fi |
2235 |
echo " Creating the list of files for the adjoint compiler." |
echo " Creating the list of files for the adjoint compiler." |
2236 |
for i in $SOURCEDIRS ; do |
for i in $SOURCEDIRS ; do |
2237 |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
list_files=`( cd $i && ls -1 *.list 2>/dev/null )` |
2238 |
for j in $list_files ; do |
for j in $list_files ; do |
2239 |
cat $i/$j >> ad_files |
cat $i/$j >> adSrcFiles.tmp |
2240 |
done |
done |
2241 |
done |
done |
2242 |
if test ! "x"$FS = "x.f" ; then |
if test ! "x"$FS = "x.f" ; then |
2243 |
cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f |
cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f |
2244 |
mv -f ad_files_f ad_files |
mv -f adSrcFiles.tmp_f adSrcFiles.tmp |
2245 |
fi |
fi |
2246 |
|
|
2247 |
echo |
echo |
2299 |
exit 1 |
exit 1 |
2300 |
fi |
fi |
2301 |
rm -f .links.tmp/foo |
rm -f .links.tmp/foo |
2302 |
|
|
2303 |
|
if test "x$OPENAD" != x ; then |
2304 |
|
OAD_DONT_COMPILE="/dev/null" |
2305 |
|
OAD_DONT_TRANSFORM="/dev/null" |
2306 |
|
OAD_KEEP_ORIGINAL="/dev/null" |
2307 |
|
OAD_CB2M_FILES="/dev/null" |
2308 |
|
echo " looking for dontCompile file: " |
2309 |
|
for i in "." $MODS ; do |
2310 |
|
if test -r $i"/dontCompile" ; then |
2311 |
|
OAD_DONT_COMPILE=$i"/dontCompile" |
2312 |
|
echo " found $OAD_DONT_COMPILE" |
2313 |
|
break |
2314 |
|
fi |
2315 |
|
done |
2316 |
|
echo " looking for dontTransform file: " |
2317 |
|
for i in "." $MODS ; do |
2318 |
|
if test -r $i"/dontTransform" ; then |
2319 |
|
OAD_DONT_TRANSFORM=$i"/dontTransform" |
2320 |
|
echo " found $OAD_DONT_TRANSFORM" |
2321 |
|
break |
2322 |
|
fi |
2323 |
|
done |
2324 |
|
echo " looking for keepOriginal file: " |
2325 |
|
for i in "." $MODS ; do |
2326 |
|
if test -r $i"/keepOriginal" ; then |
2327 |
|
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
2328 |
|
echo " found $OAD_KEEP_ORIGINAL" |
2329 |
|
break |
2330 |
|
fi |
2331 |
|
done |
2332 |
|
echo " looking for cb2mFiles: " |
2333 |
|
for i in "." $MODS ; do |
2334 |
|
if test -r $i"/cb2mFiles" ; then |
2335 |
|
OAD_CB2M_FILES=$i"/cb2mFiles" |
2336 |
|
echo " found $OAD_CB2M_FILES" |
2337 |
|
break |
2338 |
|
fi |
2339 |
|
done |
2340 |
|
echo " OpenAD exceptions: " |
2341 |
|
fi |
2342 |
|
|
2343 |
echo "# This section creates symbolic links" > srclinks.tmp |
echo "# This section creates symbolic links" > srclinks.tmp |
2344 |
echo "" >> srclinks.tmp |
echo "" >> srclinks.tmp |
2345 |
printf 'SRCFILES = ' > srclist.inc |
printf 'F77_SRC_FILES = ' > F77srclist.tmp |
2346 |
printf 'CSRCFILES = ' > csrclist.inc |
printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp |
2347 |
printf 'F90SRCFILES = ' > f90srclist.inc |
printf 'C_SRC_FILES = ' > csrclist.tmp |
2348 |
printf 'HEADERFILES = ' > hlist.inc |
printf 'F90_SRC_FILES = ' > F90srclist.tmp |
2349 |
printf 'AD_FLOW_FILES = ' > ad_flow_files.inc |
printf 'H_SRC_FILES = ' > hsrclist.tmp |
2350 |
|
printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp |
2351 |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
alldirs="$SOURCEDIRS $INCLUDEDIRS ." |
2352 |
for d in $alldirs ; do |
for d in $alldirs ; do |
2353 |
deplist= |
deplist= |
2354 |
sfiles=`( cd $d; echo *.[h,c,F] *.flow )` |
sfiles=`( cd $d; echo *.[h,c,F] *.flow )` |
2355 |
sfiles=`( echo $sfiles; cd $d; echo *.F90 )` |
sfiles=`( echo $sfiles; cd $d; echo *.F90 )` |
2356 |
|
if test "x$OPENAD" != x ; then |
2357 |
|
sfiles=`( echo $sfiles | grep -v _cb2m\. )` |
2358 |
|
fi |
2359 |
for sf in $sfiles ; do |
for sf in $sfiles ; do |
2360 |
if test ! -r ".links.tmp/$sf" ; then |
if test ! -r ".links.tmp/$sf" ; then |
2361 |
if test -f "$d/$sf" ; then |
if test -f "$d/$sf" ; then |
2390 |
if test "x$ignore_f" = xf ; then |
if test "x$ignore_f" = xf ; then |
2391 |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
extn=`echo $sf | $AWK -F. '{print $NF}'` |
2392 |
case $extn in |
case $extn in |
2393 |
F) |
F) |
2394 |
echo " \\" >> srclist.inc |
echo " \\" >> F77srclist.tmp |
2395 |
printf " $sf" >> srclist.inc |
printf " $sf" >> F77srclist.tmp |
2396 |
;; |
if test "x$OPENAD" != x ; then |
2397 |
F90) |
basename=${sf%%.F} |
2398 |
echo " \\" >> f90srclist.inc |
isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp` |
2399 |
printf " $sf" >> f90srclist.inc |
if test -z "$isAD" ; then |
2400 |
;; |
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` |
2401 |
c) |
if test -z "$toBeIgnored" ; then |
2402 |
echo " \\" >> csrclist.inc |
echo " \\" >> nonADF77srclist.tmp |
2403 |
printf " $sf" >> csrclist.inc |
printf " $sf" >> nonADF77srclist.tmp |
2404 |
;; |
else |
2405 |
h) |
echo " not to be compiled : $sf" |
2406 |
echo " \\" >> hlist.inc |
fi |
2407 |
printf " $sf" >> hlist.inc |
else # file is initially listed as an AD file we want to exclude it |
2408 |
;; |
# or we want to retain the untransformed version |
2409 |
flow) |
notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}` |
2410 |
echo " \\" >> ad_flow_files.inc |
untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}` |
2411 |
printf " $sf" >> ad_flow_files.inc |
if test -n "$notToBeTransformed"; then |
2412 |
;; |
echo " not to be transformed: $sf" |
2413 |
esac |
fi |
2414 |
fi |
if test -n "$untransformedVersionToBeKept" ; then |
2415 |
|
echo " original to be kept : $sf" |
2416 |
|
fi |
2417 |
|
if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then |
2418 |
|
echo " \\" >> nonADF77srclist.tmp |
2419 |
|
printf " $sf" >> nonADF77srclist.tmp |
2420 |
|
fi |
2421 |
|
fi |
2422 |
|
fi |
2423 |
|
;; |
2424 |
|
F90) |
2425 |
|
echo " \\" >> F90srclist.tmp |
2426 |
|
printf " $sf" >> F90srclist.tmp |
2427 |
|
;; |
2428 |
|
c) |
2429 |
|
echo " \\" >> csrclist.tmp |
2430 |
|
printf " $sf" >> csrclist.tmp |
2431 |
|
;; |
2432 |
|
h) |
2433 |
|
echo " \\" >> hsrclist.tmp |
2434 |
|
printf " $sf" >> hsrclist.tmp |
2435 |
|
;; |
2436 |
|
flow) |
2437 |
|
echo " \\" >> ad_flow_files.tmp |
2438 |
|
printf " $sf" >> ad_flow_files.tmp |
2439 |
|
;; |
2440 |
|
esac |
2441 |
|
fi |
2442 |
fi |
fi |
2443 |
fi |
fi |
2444 |
done |
done |
2445 |
if test "x$deplist" != x ; then |
if test "x$deplist" != x ; then |
2446 |
echo "" >> srclinks.tmp |
if test "$d" != "." ; then |
2447 |
|
echo "" >> srclinks.tmp |
2448 |
echo "# These files are linked from $d" >> srclinks.tmp |
echo "# These files are linked from $d" >> srclinks.tmp |
2449 |
echo "$deplist :" >> srclinks.tmp |
echo "$deplist :" >> srclinks.tmp |
2450 |
printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp |
# We need to make sure that the link isn't already there. |
2451 |
|
# This may happen when make thinks that a header file has to be "remade" |
2452 |
|
# because a module it depends on has changed. In this case we do nothing. |
2453 |
|
printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp |
2454 |
|
fi |
2455 |
fi |
fi |
2456 |
done |
done |
2457 |
rm -rf .links.tmp |
rm -rf .links.tmp |
2458 |
echo "" >> srclist.inc |
echo "" >> F77srclist.tmp |
2459 |
echo "" >> csrclist.inc |
echo "" >> nonADF77srclist.tmp |
2460 |
echo "" >> f90srclist.inc |
echo "" >> csrclist.tmp |
2461 |
echo "" >> hlist.inc |
echo "" >> F90srclist.tmp |
2462 |
echo "" >> ad_flow_files.inc |
echo "" >> hsrclist.tmp |
2463 |
|
echo "" >> ad_flow_files.tmp |
2464 |
|
|
2465 |
if test -f $MAKEFILE ; then |
if test -f $MAKEFILE ; then |
2466 |
mv -f $MAKEFILE "$MAKEFILE.bak" |
mv -f $MAKEFILE "$MAKEFILE.bak" |
2555 |
KFLAGS1 = ${KFLAGS1} |
KFLAGS1 = ${KFLAGS1} |
2556 |
KFLAGS2 = ${KFLAGS2} |
KFLAGS2 = ${KFLAGS2} |
2557 |
# Optim./debug for FC |
# Optim./debug for FC |
2558 |
FFLAGS = ${FFLAGS} |
FFLAGS = ${FFLAGS} ${FEXTRAFLAGS} |
2559 |
FOPTIM = ${FOPTIM} |
FOPTIM = ${FOPTIM} |
2560 |
# Optim./debug for FC |
# Optim./debug for FC |
2561 |
F90FLAGS = ${F90FLAGS} |
F90FLAGS = ${F90FLAGS} |
2562 |
F90OPTIM = ${F90OPTIM} |
F90OPTIM = ${F90OPTIM} |
2563 |
|
F90FIXEDFORMAT = ${F90FIXEDFORMAT} |
2564 |
# Flags for CC |
# Flags for CC |
2565 |
CFLAGS = ${CFLAGS} |
CFLAGS = ${CFLAGS} |
2566 |
# Files that should not be optimized |
# Files that should not be optimized |
2573 |
|
|
2574 |
EOF |
EOF |
2575 |
|
|
2576 |
cat srclist.inc >> $MAKEFILE |
cat F77srclist.tmp >> $MAKEFILE |
2577 |
cat csrclist.inc >> $MAKEFILE |
cat nonADF77srclist.tmp >> $MAKEFILE |
2578 |
cat f90srclist.inc >> $MAKEFILE |
cat csrclist.tmp >> $MAKEFILE |
2579 |
cat hlist.inc >> $MAKEFILE |
cat F90srclist.tmp >> $MAKEFILE |
2580 |
cat ad_flow_files.inc >> $MAKEFILE |
cat hsrclist.tmp >> $MAKEFILE |
2581 |
|
cat ad_flow_files.tmp >> $MAKEFILE |
2582 |
|
|
2583 |
|
rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp |
2584 |
|
|
2585 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2586 |
echo 'F77FILES = $(SRCFILES:.F=.'$FS')' >> $MAKEFILE |
|
2587 |
echo 'F90FILES = $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE |
# add definitions for preprocessed sources |
2588 |
echo 'OBJFILES = $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE |
# and note that not all systems allow case sensitive extensions |
2589 |
|
# hence the $FS and $FS90 here. |
2590 |
|
# for fixed format f90 files we use ff90 or FF90 resp |
2591 |
|
# but these are not expected to be the original source files |
2592 |
|
|
2593 |
|
echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')' >> $MAKEFILE |
2594 |
|
echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE |
2595 |
|
echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE |
2596 |
|
echo 'FLOFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE |
2597 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2598 |
echo '.SUFFIXES:' >> $MAKEFILE |
echo '.SUFFIXES:' >> $MAKEFILE |
2599 |
echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE |
echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE |
|
rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc |
|
|
rm -f ad_flow_files.inc |
|
2600 |
|
|
2601 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
2602 |
|
|
2603 |
all: \$(EXECUTABLE) |
all: \$(EXECUTABLE) |
2604 |
\$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES) |
\$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES) |
2605 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
2606 |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS) |
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS) |
2607 |
depend: |
depend: |
2608 |
@make links |
@make links |
2609 |
\$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES) |
\$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES) |
2610 |
\$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE) |
\$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE) |
2611 |
-rm -f makedepend.out |
-rm -f makedepend.out |
2612 |
|
|
2616 |
ar rcv libmitgcmuv.a \$(OBJFILES) |
ar rcv libmitgcmuv.a \$(OBJFILES) |
2617 |
ar d libmitgcmuv.a main.o |
ar d libmitgcmuv.a main.o |
2618 |
|
|
2619 |
links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES) |
links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES) |
2620 |
|
|
2621 |
small_f: \$(F77FILES) \$(F90FILES) |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
2622 |
|
|
2623 |
output.txt: \$(EXECUTABLE) |
output.txt: \$(EXECUTABLE) |
2624 |
@printf 'running ... ' |
@printf 'running ... ' |
2627 |
clean: |
clean: |
2628 |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
2629 |
-rm -rf *.o |
-rm -rf *.o |
2630 |
-rm -rf *.$FS |
-rm -rf *.$FS *.flowdir |
2631 |
|
-rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input* |
2632 |
|
-rm -rf temp.sed |
2633 |
Clean: |
Clean: |
2634 |
@make clean |
@make clean |
2635 |
@make cleanlinks |
@make cleanlinks |
2636 |
-rm -f \$(SPECIAL_FILES) |
-rm -f \$(SPECIAL_FILES) |
2637 |
-rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak |
-rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak |
2638 |
|
-rm -f taf_command taf_output taf_ad.log taf_ad_flow.log |
2639 |
CLEAN: |
CLEAN: |
2640 |
@make Clean |
@make Clean |
2641 |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
-find \$(EXEDIR) -name "*.meta" -exec rm {} \; |
2642 |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
-find \$(EXEDIR) -name "*.data" -exec rm {} \; |
2643 |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
-find \$(EXEDIR) -name "fort.*" -exec rm {} \; |
2644 |
-rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime |
-rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime |
2645 |
|
-rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
2646 |
-rm -rf mnc_test_* |
-rm -rf mnc_test_* |
2647 |
|
|
2648 |
#eh3 Makefile: makefile |
#eh3 Makefile: makefile |
2651 |
cleanlinks: |
cleanlinks: |
2652 |
-find . -type l -exec rm {} \; |
-find . -type l -exec rm {} \; |
2653 |
|
|
2654 |
# Special targets (SPECIAL_FILES) which are create by make |
# Special targets (SPECIAL_FILES) which are created by make |
2655 |
${PACKAGES_DOT_H}: |
${PACKAGES_DOT_H}: |
2656 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
2657 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@ |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@ |
2676 |
|
|
2677 |
decode_files.o : EMBEDDED_FILES.h |
decode_files.o : EMBEDDED_FILES.h |
2678 |
|
|
2679 |
## \$(F77FILES) |
## \$(F77_PP_SRC_FILES) |
2680 |
all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile |
all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile |
2681 |
@echo Creating \$@ ... |
@echo Creating \$@ ... |
2682 |
-tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile |
-tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile |
2683 |
-rm -f all_fF.tar.gz |
-rm -f all_fF.tar.gz |
2684 |
-gzip all_fF.tar |
-gzip all_fF.tar |
2685 |
|
|
2701 |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
2702 |
.$FS.o: |
.$FS.o: |
2703 |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
\$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< |
2704 |
.F90.o: |
.F90.$FS90: |
2705 |
|
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
2706 |
|
.FF90.f$FS90: |
2707 |
|
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
2708 |
|
.$FS90.o: |
2709 |
\$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< |
\$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< |
2710 |
|
.f$FS90.o: |
2711 |
|
cp \$< \$(basename \$<).f90 |
2712 |
|
\$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename \$<).f90 |
2713 |
.c.o: |
.c.o: |
2714 |
\$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< |
\$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< |
2715 |
|
.flow.flowdir: |
2716 |
|
\$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ |
2717 |
|
|
2718 |
# Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain |
# Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain |
2719 |
.F.p: |
.F.p: |
2721 |
.p.$FS: |
.p.$FS: |
2722 |
\$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$< |
\$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$< |
2723 |
|
|
2724 |
|
EOF |
2725 |
|
|
2726 |
#========================================= |
#========================================= |
2727 |
#=== Automatic Differentiation Rules === |
#=== Automatic Differentiation Rules === |
2728 |
|
#=== for TAMC/TAF ====================== |
2729 |
|
|
2730 |
|
if test "x$OPENAD" == x ; then |
2731 |
|
|
2732 |
|
cat >>$MAKEFILE <<EOF |
2733 |
|
|
2734 |
TAMC = ${TAMC} |
TAMC = ${TAMC} |
2735 |
TAF = ${TAF} |
TAF = ${TAF} |
2753 |
echo " Add the source list for AD code generation" |
echo " Add the source list for AD code generation" |
2754 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2755 |
printf "AD_FILES = " >> $MAKEFILE |
printf "AD_FILES = " >> $MAKEFILE |
2756 |
AD_FILES=`cat ad_files` |
AD_FILES=`cat adSrcFiles.tmp` |
2757 |
for i in $AD_FILES ; do |
for i in $AD_FILES ; do |
2758 |
echo " \\" >> $MAKEFILE |
echo " \\" >> $MAKEFILE |
2759 |
printf " $i" >> $MAKEFILE |
printf " $i" >> $MAKEFILE |
2760 |
done |
done |
2761 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
2762 |
rm -f ad_files |
rm -f adSrcFiles.tmp |
2763 |
|
|
2764 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
2765 |
|
|
2768 |
adtaf: ad_taf_output.$FS |
adtaf: ad_taf_output.$FS |
2769 |
adtamc: ad_tamc_output.$FS |
adtamc: ad_tamc_output.$FS |
2770 |
|
|
2771 |
ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES) |
ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) |
2772 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template |
2773 |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
2774 |
-rm -f ad_config.template |
-rm -f ad_config.template |
2775 |
@make \$(F77FILES) |
@make \$(F77_PP_SRC_FILES) |
2776 |
@make \$(AD_FLOW_FILES) |
@make \$(FLOFILES) |
2777 |
cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS |
cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS |
2778 |
|
|
2779 |
ad_taf_output.$FS: ad_input_code.$FS |
ad_taf_output.$FS: ad_input_code.$FS |
2780 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
2781 |
|
ls -l ad_input_code_ad.$FS |
2782 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
2783 |
|
|
2784 |
adtafonly: |
adtafonly: |
2785 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
2786 |
|
ls -l ad_input_code_ad.$FS |
2787 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
2788 |
|
|
2789 |
\${EXE_AD}: ad_taf_output.o \$(OBJFILES) |
\${EXE_AD}: ad_taf_output.o \$(OBJFILES) |
2807 |
ftltaf: ftl_taf_output.$FS |
ftltaf: ftl_taf_output.$FS |
2808 |
ftltamc: ftl_tamc_output.$FS |
ftltamc: ftl_tamc_output.$FS |
2809 |
|
|
2810 |
ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES) |
ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) |
2811 |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template |
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template |
2812 |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
2813 |
-rm -f ftl_config.template |
-rm -f ftl_config.template |
2814 |
@make \$(F77FILES) |
@make \$(F77_PP_SRC_FILES) |
2815 |
@make \$(AD_FLOW_FILES) |
@make \$(AD_FLOW_FILES) |
2816 |
cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS |
cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS |
2817 |
|
|
2818 |
ftl_taf_output.$FS: ftl_input_code.$FS |
ftl_taf_output.$FS: ftl_input_code.$FS |
2819 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
2820 |
|
ls -l ftl_input_code_ftl.$FS |
2821 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
2822 |
|
|
2823 |
ftltafonly: |
ftltafonly: |
2824 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
2825 |
|
ls -l ftl_input_code_ftl.$FS |
2826 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
2827 |
|
|
2828 |
ftl_taf: ftl_taf_output.o \$(OBJFILES) |
ftl_taf: ftl_taf_output.o \$(OBJFILES) |
2860 |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h |
2861 |
-rm -f ftl_config.template |
-rm -f ftl_config.template |
2862 |
|
|
2863 |
#========================================= |
EOF |
2864 |
|
|
2865 |
|
fi |
2866 |
|
|
2867 |
|
#=== for OpenAD ======================== |
2868 |
|
|
2869 |
|
if test "x$OPENAD" != x ; then |
2870 |
|
|
2871 |
|
# ============ begin OpenAD specific section ============== |
2872 |
|
|
2873 |
|
cat >>$MAKEFILE <<EOF |
2874 |
|
|
2875 |
|
# all the source files linked from the various locations: |
2876 |
|
ALL_LINKED_FILES= \ |
2877 |
|
\$(F77_SRC_FILES) \ |
2878 |
|
\$(C_SRC_FILES) \ |
2879 |
|
\$(H_SRC_FILES) \ |
2880 |
|
\$(F90_SRC_FILES) \ |
2881 |
|
\$(SPECIAL_FILES) |
2882 |
|
|
2883 |
|
ifndef OPENADROOT |
2884 |
|
\$(error "Error: environment variable OPENADROOT not defined!") |
2885 |
|
endif |
2886 |
|
|
2887 |
|
ifndef XAIFSCHEMAROOT |
2888 |
|
\$(error "Error: environment variable XAIFSCHEMAROOT not defined!") |
2889 |
|
endif |
2890 |
|
|
2891 |
|
ifndef XAIFBOOSTERROOT |
2892 |
|
\$(error "Error: environment variable XAIFBOOSTERROOT not defined!") |
2893 |
|
endif |
2894 |
|
|
2895 |
EOF |
EOF |
2896 |
|
|
2897 |
|
echo " Add the source list for common block to module conversion " |
2898 |
|
echo >> $MAKEFILE |
2899 |
|
printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE |
2900 |
|
for i in `cat ${OAD_CB2M_FILES}` ; do |
2901 |
|
echo " \\" >> $MAKEFILE |
2902 |
|
printf " $i" >> $MAKEFILE |
2903 |
|
done |
2904 |
|
echo >> $MAKEFILE |
2905 |
|
|
2906 |
|
echo " Add the source list for AD code generation" |
2907 |
|
echo >> $MAKEFILE |
2908 |
|
printf "AD_FILES = " >> $MAKEFILE |
2909 |
|
for i in `cat ${OAD_CB2M_FILES}` ; do |
2910 |
|
echo " \\" >> $MAKEFILE |
2911 |
|
printf " ${i}_mod.f$FS90" >> $MAKEFILE |
2912 |
|
done |
2913 |
|
AD_FILES=`cat adSrcFiles.tmp` |
2914 |
|
for i in $AD_FILES ; do |
2915 |
|
basename=${i%%.f} |
2916 |
|
toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}` |
2917 |
|
if test -z "$toBeIgnored" ; then |
2918 |
|
echo " \\" >> $MAKEFILE |
2919 |
|
printf " $i" >> $MAKEFILE |
2920 |
|
fi |
2921 |
|
done |
2922 |
|
echo >> $MAKEFILE |
2923 |
|
rm -f adSrcFiles.tmp |
2924 |
|
|
2925 |
|
cat >>$MAKEFILE <<EOF |
2926 |
|
|
2927 |
|
adAll: \$(EXE_AD) |
2928 |
|
.PHONY: adAll |
2929 |
|
|
2930 |
|
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
2931 |
|
|
2932 |
|
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
2933 |
|
|
2934 |
|
.PHONY: adDepend |
2935 |
|
adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90) |
2936 |
|
\$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES) |
2937 |
|
\$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE) |
2938 |
|
-rm -f makedepend.out |
2939 |
|
|
2940 |
|
OPENAD_SUPPORT_F90_SRC_FILES = \ |
2941 |
|
w2f__types.F90 \ |
2942 |
|
OAD_active.F90 \ |
2943 |
|
OAD_cp.F90 \ |
2944 |
|
OAD_rev.F90 \ |
2945 |
|
OAD_tape.F90 |
2946 |
|
|
2947 |
|
OPENAD_SUPPORT_C_SRC_FILES = \ |
2948 |
|
iaddr.c \ |
2949 |
|
timeRatio.c |
2950 |
|
|
2951 |
|
f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90) |
2952 |
|
cat \$^ > \$@ |
2953 |
|
|
2954 |
|
f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 |
2955 |
|
cat \$^ > \$@ |
2956 |
|
|
2957 |
|
f95_test.out: f95_test_mods.f90 f95_test.f90 |
2958 |
|
f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1 |
2959 |
|
f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1 |
2960 |
|
|
2961 |
|
AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o) |
2962 |
|
|
2963 |
|
\$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES) |
2964 |
|
@echo Creating \$@ ... |
2965 |
|
\$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS) |
2966 |
|
|
2967 |
|
# makefile debug rule |
2968 |
|
openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 |
2969 |
|
.PHONY: openad |
2970 |
|
|
2971 |
|
# create the module files |
2972 |
|
%_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk |
2973 |
|
../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk |
2974 |
|
|
2975 |
|
# create the header files |
2976 |
|
%_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk |
2977 |
|
../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES) |
2978 |
|
|
2979 |
|
# change everybody else to use the new module files: |
2980 |
|
%_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash |
2981 |
|
../OAD_support/cb2mUseModules.bash $< ${MPI} |
2982 |
|
|
2983 |
|
# makefile debug rule |
2984 |
|
small_f: \$(CB2M_F90_PP_SRC_FILES) |
2985 |
|
.PHONY: small_f |
2986 |
|
|
2987 |
|
ad_output.txt: \$(EXE_AD) |
2988 |
|
@printf 'linking data files ... ' |
2989 |
|
\$(LN) -f ../input_ad/data* ../input_ad/eedata . |
2990 |
|
\$(LN) -f ../../global_ocean.90x40x15/input/*.bin . |
2991 |
|
@printf 'running ... ' |
2992 |
|
@./\$(EXE_AD) > \$@ |
2993 |
|
|
2994 |
|
CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90) |
2995 |
|
ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES) |
2996 |
|
cat \$^ > \$@ |
2997 |
|
|
2998 |
|
# strip all comments and blanks to reduce |
2999 |
|
# the file size in order to reduce perl's memory requirements |
3000 |
|
ad_input_code_sf.f$FS90 : ad_input_code.f$FS90 |
3001 |
|
cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@ |
3002 |
|
|
3003 |
|
# mfef90 preprocessing |
3004 |
|
# expand statement functions |
3005 |
|
# expose mfef90 specific substring handling |
3006 |
|
# add the w2f__types module |
3007 |
|
ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90 |
3008 |
|
./mfef90 -r8 -z -F -N132 \$< |
3009 |
|
mv \$<.B \$(basename \$<).B |
3010 |
|
./whirl2f -openad \$(basename \$<).B |
3011 |
|
cat w2f__types.f90 \$(basename \$<).w2f.f > \$@ |
3012 |
|
|
3013 |
|
# canonicalizer |
3014 |
|
ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py |
3015 |
|
./preProcess.py -H -S \$< -o \$@ |
3016 |
|
|
3017 |
|
# F -> WHIRL |
3018 |
|
# note that the canonicalized version cuts off at col 72 |
3019 |
|
# doing this also for string constants which is ok as long |
3020 |
|
# as we are in fixed mode and cut of exactly there. |
3021 |
|
# Otherwise mfef90 patches in spaces to fill up to 72 (or 132) |
3022 |
|
# characters respectively. |
3023 |
|
ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90 |
3024 |
|
./mfef90 -r8 -z -F \$< |
3025 |
|
mv \$<.B \$@ |
3026 |
|
|
3027 |
|
# WHIRL -> XAIF |
3028 |
|
ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif |
3029 |
|
./whirl2xaif -s -n --debug 1 -o \$@ \$< |
3030 |
|
|
3031 |
|
# XAIF -> XAIF' |
3032 |
|
ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm |
3033 |
|
./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r |
3034 |
|
|
3035 |
|
# XAIF' -> WHIRL' |
3036 |
|
ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl |
3037 |
|
./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$< |
3038 |
|
|
3039 |
|
# WHIRL' -> F' |
3040 |
|
ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be |
3041 |
|
./whirl2f -FLIST:ftn_file=\$@ -openad \$< |
3042 |
|
|
3043 |
|
# insert template directives |
3044 |
|
ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash |
3045 |
|
../OAD_support/insertTemplateDir.bash \$< \$@ |
3046 |
|
|
3047 |
|
# postprocess F' |
3048 |
|
ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f) |
3049 |
|
perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$< |
3050 |
|
# the postprocessor still gets the name wrong |
3051 |
|
cat \$<.pp | sed 's/RETURN//' > \$@ |
3052 |
|
|
3053 |
|
# extract all transformed modules |
3054 |
|
all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 |
3055 |
|
cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@ |
3056 |
|
|
3057 |
|
# remove the transformed globals module from the |
3058 |
|
# transformed ad_input_code file |
3059 |
|
# and remove for now the duplicate variables |
3060 |
|
# and fix 2 data statements |
3061 |
|
ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 |
3062 |
|
cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^ INTEGER(w2f__i4) DOLOOP_UB/d' > \$@ |
3063 |
|
|
3064 |
|
# setup some links |
3065 |
|
%.xsd: |
3066 |
|
\$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . |
3067 |
|
|
3068 |
|
mfef90: |
3069 |
|
\$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 . |
3070 |
|
|
3071 |
|
# link the support files: |
3072 |
|
\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES): |
3073 |
|
\$(LN) ../OAD_support/\$@ . |
3074 |
|
|
3075 |
|
whirl2xaif xaif2whirl: |
3076 |
|
\$(LN) \${OPENADFORTTK}/bin/\$@ . |
3077 |
|
|
3078 |
|
%.pl: |
3079 |
|
\$(LN) \${OPENADFORTTK}/bin/\$@ . |
3080 |
|
|
3081 |
|
preProcess.py: |
3082 |
|
\$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ . |
3083 |
|
|
3084 |
|
whirl2f whirl2f_be: |
3085 |
|
\$(LN) \${OPEN64ROOT}/whirl2f/\$@ . |
3086 |
|
|
3087 |
|
openad_adm: |
3088 |
|
\$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@ |
3089 |
|
|
3090 |
|
# ============ end OpenAD specific section ============== |
3091 |
|
|
3092 |
|
EOF |
3093 |
|
|
3094 |
|
fi |
3095 |
|
|
3096 |
|
#========================================= |
3097 |
|
|
3098 |
if test "x$EXEHOOK" != x ; then |
if test "x$EXEHOOK" != x ; then |
3099 |
printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE |
printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE |
3100 |
fi |
fi |