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revision 1.55 by jmc, Sat Dec 6 00:34:29 2003 UTC revision 1.93 by edhill, Fri Jul 30 19:53:15 2004 UTC
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
243      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
244      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
245      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
253            
# Line 98  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # makedepend is not always available      look_for_makedepend
271      if test "x${MAKEDEPEND}" = x ; then  
272        which makedepend >& /dev/null      #================================================================
273        RETVAL=$?      #  look for possible C compilers
274        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
276           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
277        fi          rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309      fi      fi
310    
311      # look for possible fortran compilers      #================================================================
312        #  look for possible FORTRAN compilers
313      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
# Line 134  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 143  EOF Line 344  EOF
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 213  get_pdepend_list()  { Line 423  get_pdepend_list()  {
423      . ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
# Line 227  Usage: "$0" [OPTIONS] Line 437  Usage: "$0" [OPTIONS]
437      -help | --help | -h | --h      -help | --help | -h | --h
438            Print this help message and exit.            Print this help message and exit.
439    
440        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442              Use "NAME" as the adoptfile.  By default, the file at
443              "tools/adjoint_options/adjoint_default" will be used.
444    
445      -nooptfile | --nooptfile      -nooptfile | --nooptfile
446        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 251  Usage: "$0" [OPTIONS] Line 466  Usage: "$0" [OPTIONS]
466        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
467            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
468    
469        -makedepend NAME | -md NAME
470          --makedepend=NAME | -md=NAME
471              Use "NAME" for the MAKEDEPEND program.
472    
473      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 287  Usage: "$0" [OPTIONS] Line 506  Usage: "$0" [OPTIONS]
506            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
507            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
515            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
516            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
517            is being used.            is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from $PATH/include, link to libraries
524              from $PATH/lib and use binaries from $PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
530    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
531    
# Line 312  EOF Line 546  EOF
546    
547  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
548  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
549    
550        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551        if test ! "x$FC_NAMEMANGLE" = x ; then
552            return 0
553        fi
554    
555      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556            
557      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 329  WARNING: Please contact <MITgcm-support@ Line 569  WARNING: Please contact <MITgcm-support@
569  EOF  EOF
570          return 1          return 1
571      fi      fi
572      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573      RETVAL=$?      RETVAL=$?
574      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
575          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 359  WARNING: Please contact <MITgcm-support@ Line 599  WARNING: Please contact <MITgcm-support@
599  EOF  EOF
600          return 1          return 1
601      fi      fi
602      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603      RETVAL=$?      RETVAL=$?
604      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
605          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 435  EOF Line 675  EOF
675  }  }
676    
677    
678    check_netcdf_libs()  {
679        echo "" > genmake_tnc.log
680        cat <<EOF > genmake_tnc.for
681          program fgennc
682    #include "netcdf.inc"
683          integer iret, ncid, xid
684          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
685          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
686          iret = nf_def_dim(ncid, 'X', 11, xid)
687          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
688          iret = nf_close(ncid)
689          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
690          end
691    EOF
692        #echo "$CPP $DEFINES $INCLUDES"
693        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
694            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
695        RET_COMPILE=$?
696        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
697        RETVAL=$?
698        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
699            HAVE_NETCDF=t
700        else
701            # try again with "-lnetcdf" added to the libs
702            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
703                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
704                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
705            RET_COMPILE=$?
706            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
707            RETVAL=$?
708            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
709                LIBS="$LIBS -lnetcdf"
710                HAVE_NETCDF=t
711            else
712                cat genmake_tnc.log >> genmake_warnings
713            fi
714        fi
715        rm -f genmake_tnc*
716    }
717    
718    
719    
720    ###############################################################################
721    #   Sequential part of script starts here
722    ###############################################################################
723    
724  #  Set defaults here  #  Set defaults here
725  COMMANDL="$0 $@"  COMMANDL="$0 $@"
726    
# Line 443  LN= Line 729  LN=
729  S64=  S64=
730  KPP=  KPP=
731  FC=  FC=
732    #CC=gcc
733    CPP=
734  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
735  DEFINES=  DEFINES=
736  PACKAGES=  PACKAGES=
737  ENABLE=  ENABLE=
738  DISABLE=  DISABLE=
739  MAKEFILE=  MAKEFILE=
740  MAKEDEPEND=  #MAKEDEPEND=
741  PDEPEND=  PDEPEND=
742  DUMPSTATE=t  DUMPSTATE=t
743  PDEFAULT=  PDEFAULT=
# Line 461  FOPTIM= Line 748  FOPTIM=
748  CFLAGS=  CFLAGS=
749  KFLAGS1=  KFLAGS1=
750  KFLAGS2=  KFLAGS2=
751    #LDADD=
752  LIBS=  LIBS=
753  KPPFILES=  KPPFILES=
754  NOOPTFILES=  NOOPTFILES=
755  NOOPTFLAGS=  NOOPTFLAGS=
756    MPI=
757    MPIPATH=
758    
759  # DEFINES checked by test compilation  # DEFINES checked by test compilation
760  HAVE_SYSTEM=  HAVE_SYSTEM=
761  HAVE_FDATE=  HAVE_FDATE=
762  FC_NAMEMANGLE=  FC_NAMEMANGLE=
763  HAVE_CLOC=  HAVE_CLOC=
764    HAVE_NETCDF=
765    HAVE_ETIME=
766    
767  MODS=  MODS=
768  TOOLSDIR=  TOOLSDIR=
769  SOURCEDIRS=  SOURCEDIRS=
770  INCLUDEDIRS=  INCLUDEDIRS=
771  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
772    
773    G2ARGS=
774    BASH=
775  PWD=`pwd`  PWD=`pwd`
776  MAKE=make  MAKE=make
777  AWK=awk  AWK=awk
# Line 493  IEEE= Line 787  IEEE=
787  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
788      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
789  fi  fi
790    FS=
791    FS90=
792    
793  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
794  AD_OPTFILE=  AD_OPTFILE=
# Line 510  TAMC_EXTRA= Line 806  TAMC_EXTRA=
806    
807  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
808  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
809  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
810    
811  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
812  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
813  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
814  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
815  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
816  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
817    
818  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
819  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 546  for i in . $MODS ; do Line 842  for i in . $MODS ; do
842          break          break
843      fi      fi
844  done  done
845  echo -n "  getting local config information:  "  printf "  getting local config information:  "
846  if test -e $gm_local ; then  if test -f $gm_local ; then
847      echo "using $gm_local"      echo "using $gm_local"
848      . $gm_local      . $gm_local
849      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 568  fi Line 864  fi
864  #done  #done
865  #parse_options  #parse_options
866  ac_prev=  ac_prev=
867  for ac_option ; do  for ac_option in $@ ; do
868    
869        G2ARGS="$G2ARGS \"$ac_option\""
870    
871      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
872      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 611  for ac_option ; do Line 909  for ac_option ; do
909          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
910              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
911                    
912            -bash | --bash)
913                ac_prev=BASH ;;
914            -bash=* | --bash=*)
915                BASH=$ac_optarg ;;
916            
917            -makedepend | --makedepend | -md | --md)
918                ac_prev=MAKEDEPEND ;;
919            -makedepend=* | --makedepend=* | -md=* | --md=*)
920                MAKEDEPEND=$ac_optarg ;;
921            
922          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
923              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
924          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 652  for ac_option ; do Line 960  for ac_option ; do
960  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
961  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
962  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
963                        
964            -cc | --cc)
965                ac_prev=CC ;;
966            -cc=* | --cc=*)
967                CC=$ac_optarg ;;
968            
969          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
970              ac_prev=FC ;;              ac_prev=FC ;;
971          -fc=* | --fc=*)          -fc=* | --fc=*)
972              FC=$ac_optarg ;;              FC=$ac_optarg ;;
973                    
974            -fs | --fs)
975                ac_prev=FS ;;
976            -fs=* | --fs=*)
977                FS=$ac_optarg ;;
978            
979            -fs90 | --fs90)
980                ac_prev=FS90 ;;
981            -fs90=* | --fs90=*)
982                FS90=$ac_optarg ;;
983            
984          -ieee | --ieee)          -ieee | --ieee)
985              IEEE=true ;;              IEEE=true ;;
986          -noieee | --noieee)          -noieee | --noieee)
987              IEEE= ;;              IEEE= ;;
988    
989            -mpi | --mpi)
990                MPI=true ;;
991            -mpi=* | --mpi=*)
992                MPIPATH=$ac_optarg
993                MPI=true ;;
994                    
995  #       -jam | --jam)  #       -jam | --jam)
996  #           JAM=1 ;;  #           JAM=1 ;;
# Line 708  if test -f ./.genmakerc ; then Line 1037  if test -f ./.genmakerc ; then
1037  fi  fi
1038    
1039  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1040      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1041        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1042          ROOTDIR=".."          ROOTDIR=".."
1043      else      else
1044          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1045              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1046                  ROOTDIR=$d                  ROOTDIR=$d
1047                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1048                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1049                  break                  break
1050              fi              fi
# Line 748  if test "x$OPTFILE" != xNONE ; then Line 1078  if test "x$OPTFILE" != xNONE ; then
1078          . "$OPTFILE"          . "$OPTFILE"
1079          RETVAL=$?          RETVAL=$?
1080          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1081              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1082              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1083              exit 1              exit 1
1084          fi          fi
# Line 761  if test "x$OPTFILE" != xNONE ; then Line 1091  if test "x$OPTFILE" != xNONE ; then
1091      fi      fi
1092  fi  fi
1093    
1094    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1095    # check_for_broken_Ff
1096    
1097  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1098  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1099      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 775  if test "x${AD_OPTFILE}" != xNONE ; then Line 1108  if test "x${AD_OPTFILE}" != xNONE ; then
1108          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1109          RETVAL=$?          RETVAL=$?
1110          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1111              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1112              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1113              exit 1              exit 1
1114          fi          fi
# Line 788  if test "x${AD_OPTFILE}" != xNONE ; then Line 1121  if test "x${AD_OPTFILE}" != xNONE ; then
1121      fi      fi
1122  fi  fi
1123    
1124  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1125  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1126    if test ! "x$BASH" = x ; then
1127        # add a trailing space so that it works within the Makefile syntax (see below)
1128        BASH="$BASH "
1129    fi
1130  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1131      cat <<EOF 1>&2      cat <<EOF 1>&2
1132    
# Line 800  Error: no Fortran compiler: please speci Line 1137  Error: no Fortran compiler: please speci
1137  EOF  EOF
1138      exit 1      exit 1
1139  fi  fi
1140    if test "x$CC" = x ; then
1141        CC=cc
1142    #     cat <<EOF 1>&2
1143    # Error: no C compiler: please specify using one of the following:
1144    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1145    #   2) the "-cc=XXX" command-line option
1146    #   3) the "./genmake_local" file
1147    # EOF
1148    #     exit 1
1149    fi
1150  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1151      LINK=$FC      LINK=$FC
1152  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1153  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1154      MAKE="make"      MAKE="make"
1155  fi  fi
1156    if test "x$CPP" = x ; then
1157        CPP=cpp
1158    fi
1159    #EH3 === UGLY ===
1160    #  The following is an ugly little hack to check for $CPP in /lib/ and
1161    #  it should eventually be replaced with a more general function that
1162    #  searches a combo of the user's path and a list of "usual suspects"
1163    #  to find the correct location for binaries such as $CPP.
1164    for i in " " "/lib/" ; do
1165        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1166    done
1167    #EH3 === UGLY ===
1168  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1169  RETVAL=$?  RETVAL=$?
1170  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 825  EOF Line 1181  EOF
1181  else  else
1182      rm -f test_cpp      rm -f test_cpp
1183  fi  fi
1184  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1185  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1186      LN="ln -s"      LN="ln -s"
1187  fi  fi
# Line 845  EOF Line 1199  EOF
1199  fi  fi
1200  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1201    
1202    #  Check for broken *.F/*.f handling and fix if possible
1203    check_for_broken_Ff
1204    
1205    if test ! "x$MPI" = x ; then
1206          echo "  Turning on MPI cpp macros"
1207          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1208    fi
1209    
1210  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1211  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1212  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1213        program hello        program hello
1214        call system('echo hi')        call system('echo hi')
# Line 865  else Line 1226  else
1226  fi  fi
1227  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1228    
1229  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1230  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1231        program hello        program hello
1232        CHARACTER(128) string        CHARACTER(128) string
# Line 886  else Line 1247  else
1247  fi  fi
1248  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1249    
1250  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1251    cat > genmake_tcomp.f <<EOF
1252          program hello
1253          REAL*4 ACTUAL, TARRAY(2)
1254          EXTERNAL ETIME
1255          REAL*4 ETIME
1256          actual = etime( tarray )
1257          print *, tarray
1258          end
1259    EOF
1260    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1261    RETVAL=$?
1262    if test "x$RETVAL" = x0 ; then
1263        HAVE_ETIME=t
1264        DEFINES="$DEFINES -DHAVE_ETIME"
1265        echo "yes"
1266    else
1267        HAVE_ETIME=
1268        echo "no"
1269    fi
1270    rm -f genmake_tcomp*
1271    
1272    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1273  check_HAVE_CLOC  check_HAVE_CLOC
1274  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1275      echo "yes"      echo "yes"
# Line 895  else Line 1278  else
1278  fi  fi
1279  rm -f genmake_t*  rm -f genmake_t*
1280    
1281    printf "  Can we create NetCDF-enabled binaries...  "
1282    check_netcdf_libs
1283    if test "x$HAVE_NETCDF" != x ; then
1284        echo "yes"
1285    else
1286        echo "no"
1287    fi
1288    
1289    
1290  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1291  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1292  for d in $MODS ; do  for d in $MODS ; do
1293      if test ! -d $d ; then      if test ! -d $d ; then
1294          echo          echo
1295          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1296          exit 1          exit 1
1297      else      else
1298          echo -n " $d"          printf " $d"
1299          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1300          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1301      fi      fi
# Line 919  if test "x${PLATFORM}" = x ; then Line 1310  if test "x${PLATFORM}" = x ; then
1310  fi  fi
1311    
1312  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1313      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1314        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1315          EXEDIR=../exe          EXEDIR=../exe
1316      else      else
1317          EXEDIR=.          EXEDIR=.
# Line 934  if test "x${TOOLSDIR}" = x ; then Line 1326  if test "x${TOOLSDIR}" = x ; then
1326      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1327  fi  fi
1328  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1329      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1330      exit 1      exit 1
1331  fi  fi
1332  if test "x$S64" = x ; then  if test "x$S64" = x ; then
# Line 955  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1347  if test -r $ROOTDIR"/eesupp/src/Makefile
1347          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1348      else      else
1349          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1350          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1351          exit 1          exit 1
1352      fi      fi
1353  fi  fi
1354    
1355    #same for exch2
1356    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1357        echo "  Making source files in exch2 from  templates"
1358        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1359        RETVAL=$?
1360        if test "x${RETVAL}" = x0 ; then
1361            rm -f make_exch2.errors
1362        else
1363            echo "Error: problem encountered while building source files in exch2:"
1364            cat make_exch2.errors 1>&2
1365            exit 1
1366        fi
1367    fi
1368    
1369  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1370  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1371      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 1015  else Line 1421  else
1421          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1422          RETVAL=$?          RETVAL=$?
1423          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1424              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1425              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1426              exit 1              exit 1
1427          fi          fi
# Line 1023  else Line 1429  else
1429              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1430          done          done
1431          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1432          expand_pkg_groups          RET=1
1433            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1434          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1435      fi      fi
1436  fi  fi
1437    
1438  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1439    for i in $PACKAGES ; do
1440        echo $i >> ./.tmp_pack
1441    done
1442    for i in `grep  "-" ./.tmp_pack` ; do
1443        j=`echo $i | sed 's/[-]//'`
1444        DISABLE="$DISABLE $j"
1445    done
1446  pack=  pack=
1447  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1448      addit="t"      addit="t"
# Line 1045  PACKAGES="$pack" Line 1459  PACKAGES="$pack"
1459  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1460  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1461  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1462    # Test if each explicitly referenced package exists
1463  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1464      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1465        if test ! -d "$ROOTDIR/pkg/$j" ; then
1466          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1467          exit 1          exit 1
1468      fi      fi
1469      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1470  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1471  PACKAGES=  PACKAGES=
1472  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1473      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1474  done  done
1475    rm -f ./.tmp_pack
1476  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1477    
1478  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1124  while test "x$ck" != xtt ; do Line 1539  while test "x$ck" != xtt ; do
1539              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1540              exit 1              exit 1
1541          fi          fi
1542          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1543            #i=$(( $i + 1 ))
1544      done      done
1545      ck=$ck"t"      ck=$ck"t"
1546  done  done
# Line 1143  for i in $PACKAGES ; do Line 1559  for i in $PACKAGES ; do
1559      fi      fi
1560  done  done
1561    
1562    #  Build MNC templates and check for ability to build and use NetCDF
1563    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1564    RETVAL=$?
1565    if test "x$RETVAL" = x0 ; then
1566        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1567        RETVAL=$?
1568        if test "x${RETVAL}" = x0 ; then
1569            rm -f make_mnc.errors
1570        else
1571            echo "Error: problem encountered while building source files in pkg/mnc:"
1572            cat make_mnc.errors 1>&2
1573            exit 1
1574        fi
1575        if test "x$HAVE_NETCDF" != xt ; then
1576            cat <<EOF
1577    
1578    WARNING: the "mnc" package has been enabled but tests failed to
1579      compile and/or execute NetCDF applications.  Please check that:
1580    
1581      1) NetCDF is installed for your compiler and
1582      2) the LIBS variable (within the 'optfile") specifies the correct
1583           NetCDF library to link against.
1584      
1585    EOF
1586        fi
1587    fi
1588    
1589  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1590  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
# Line 1187  done Line 1629  done
1629    
1630  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1631  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1632  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1633      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1634  fi  fi
1635  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1636      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1637      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1638          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1639          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1640          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1641      else              exit 1
1642          SOURCEDIRS="$SOURCEDIRS $adr"          else
1643      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1644      adr="$ROOTDIR/$d/inc"          fi
1645      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1646          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1647          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1648          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1649      else              exit 1
1650          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1651      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1652  done          fi
1653        done
1654    fi
1655    
1656  echo "  Searching for *OPTIONS.h files in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1657  echo "    of \"#define \"-type statements that are no longer allowed:"  echo "    of \"#define \"-type statements that are no longer allowed:"
# Line 1253  for i in $SOURCEDIRS ; do Line 1697  for i in $SOURCEDIRS ; do
1697      done      done
1698  done  done
1699    
1700    
1701  echo  echo
1702  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1703  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1704  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1705      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1706          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1707      fi      fi
1708  done  done
# Line 1269  rm -rf .links.tmp Line 1712  rm -rf .links.tmp
1712  mkdir .links.tmp  mkdir .links.tmp
1713  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1714  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1715  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1716  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1717  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1718  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1719  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1720  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1721  for d in $alldirs ; do  for d in $alldirs ; do
1722      deplist=      deplist=
# Line 1298  for d in $alldirs ; do Line 1741  for d in $alldirs ; do
1741                  case $extn in                  case $extn in
1742                      F)                      F)
1743                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1744                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1745                          ;;                          ;;
1746                      F90)                      F90)
1747                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1748                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1749                          ;;                          ;;
1750                      c)                      c)
1751                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1752                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1753                          ;;                          ;;
1754                      h)                      h)
1755                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1756                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1757                          ;;                          ;;
1758                      flow)                      flow)
1759                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1760                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1761                          ;;                          ;;
1762                  esac                  esac
1763              fi              fi
# Line 1334  echo "" >> f90srclist.inc Line 1777  echo "" >> f90srclist.inc
1777  echo "" >> hlist.inc  echo "" >> hlist.inc
1778  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1779    
1780  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1781      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1782  fi  fi
1783  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1343  echo "#    $MACHINE" >> $MAKEFILE Line 1786  echo "#    $MACHINE" >> $MAKEFILE
1786  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1787  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1788  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1789  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1790  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1791  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1792    
# Line 1407  MAKEDEPEND = ${MAKEDEPEND} Line 1850  MAKEDEPEND = ${MAKEDEPEND}
1850  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
1851  KPP = ${KPP}  KPP = ${KPP}
1852  # Fortran compiler  # Fortran compiler
1853  FC = ${FC}  FC = ${FC} in
1854  # Fortran compiler  # Fortran compiler
1855  F90C = ${F90C}  F90C = ${F90C}
1856    # C compiler
1857    CC = ${CC}
1858  # Link editor  # Link editor
1859  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1860    
1861  # Defines for CPP  # Defines for CPP
1862  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1443  cat csrclist.inc      >> $MAKEFILE Line 1888  cat csrclist.inc      >> $MAKEFILE
1888  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1889  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1890  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1891  echo               >> $MAKEFILE  echo >> $MAKEFILE
1892  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1893  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1894  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1895    echo >> $MAKEFILE
1896    echo '.SUFFIXES:' >> $MAKEFILE
1897    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1898  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1899  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1900    
1901  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1902    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1903  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1904  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1905          @echo Creating \$@ ...          @echo Creating \$@ ...
1906          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1907  depend:  depend:
1908          @make links          @make links
1909          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1910          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1911            -rm -f makedepend.out
1912    
1913  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1914    
# Line 1474  output.txt: \$(EXECUTABLE) Line 1919  output.txt: \$(EXECUTABLE)
1919          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1920    
1921  clean:  clean:
1922          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1923  Clean:  Clean:
1924          @make clean          @make clean
1925          @make cleanlinks          @make cleanlinks
# Line 1485  CLEAN: Line 1930  CLEAN:
1930          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1931          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1932          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1933          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1934    
1935  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1936  makefile:  makefile:
1937          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
1938  cleanlinks:  cleanlinks:
1939          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1940    
1941  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets ($SPECIAL_FILES) which are create by make
1942  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
1943          @echo Creating \$@ ...          @echo Creating \$@ ...
1944          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1945  AD_CONFIG.h:  AD_CONFIG.h:
1946          @echo Creating \$@ ...          @echo Creating \$@ ...
1947          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1948  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
1949          @echo Creating \$@ ...          @echo Creating \$@ ...
1950          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
1951    
1952  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
1953  .F.f:  
1954    %.o : %.F
1955    
1956    .F.$FS:
1957          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1958  .f.o:  .$FS.o:
1959          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1960  .F90.f90:  .F90.$FS90:
1961          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1962  .f90.o:  .$FS90.o:
1963          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1964  .c.o:  .c.o:
1965          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1966    
1967  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1968  .F.p:  .F.p:
1969          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1970  .p.f:  .p.$FS:
1971          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1972    
1973  #=========================================  #=========================================
# Line 1546  done Line 1994  done
1994    
1995  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1996  echo >> $MAKEFILE  echo >> $MAKEFILE
1997  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1998  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1999  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2000      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2001      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2002  done  done
2003  echo >> $MAKEFILE  echo >> $MAKEFILE
2004  rm -f ad_files  rm -f ad_files
# Line 1563  adtaf: ad_taf_output.f Line 2011  adtaf: ad_taf_output.f
2011  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
2012    
2013  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2014          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2015          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2016          -rm -f ad_config.template          -rm -f ad_config.template
2017          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1595  ftltaf: ftl_taf_output.f Line 2043  ftltaf: ftl_taf_output.f
2043  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
2044    
2045  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2046          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2047          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2048          -rm -f ftl_config.template          -rm -f ftl_config.template
2049          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1644  for i in $KPPFILES ; do Line 2092  for i in $KPPFILES ; do
2092      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2093          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2094      fi      fi
2095      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2096  done  done
2097    
2098  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1654  for i in $NOOPTFILES ; do Line 2102  for i in $NOOPTFILES ; do
2102      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2103          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2104      fi      fi
2105      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2106      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2107  done  done
2108    
# Line 1668  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2116  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2116  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2117    
2118  # Create special header files  # Create special header files
2119  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2120  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2121      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2122  else  else
2123      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2124      RETVAL=$?      RETVAL=$?
2125      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
2126          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1682  else Line 2130  else
2130      fi      fi
2131  fi  fi
2132  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2133      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2134  fi  fi
2135    
2136    
2137  #  Write the "state" for future records  #  Write the "state" for future records
2138  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2139      echo -n "" > genmake_state      printf "" > genmake_state
2140      for i in $gm_state ; do      for i in $gm_state ; do
2141          t1="t2=\$$i"          t1="t2=\$$i"
2142          eval $t1          eval $t1
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