19 |
-help | --help | -h | --h |
-help | --help | -h | --h |
20 |
Print this help message and exit. |
Print this help message and exit. |
21 |
|
|
22 |
|
-oad | --oad |
23 |
|
Generate a Makefile for an OpenAD built |
24 |
|
|
25 |
|
-nocat4ad | -dog4ad | -ncad | -dad |
26 |
|
do not concatenate (cat) source code sent to TAF |
27 |
|
resulting in compilation of multiple files |
28 |
|
|
29 |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
-adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME |
30 |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
-adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME |
31 |
Use "NAME" as the adoptfile. By default, the file at |
Use "NAME" as the adoptfile. By default, the file at |
32 |
|
"tools/adjoint_options/adjoint_oad" (for OpenAD built) or |
33 |
"tools/adjoint_options/adjoint_default" will be used. |
"tools/adjoint_options/adjoint_default" will be used. |
34 |
|
|
35 |
-nooptfile | --nooptfile |
-nooptfile | --nooptfile |
1087 |
} |
} |
1088 |
|
|
1089 |
check_lapack_libs() { |
check_lapack_libs() { |
1090 |
if test ! "x$SKIP_LAPACK_CHECK" = x ; then |
if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi |
|
return |
|
|
fi |
|
1091 |
echo >> $LOGFILE |
echo >> $LOGFILE |
1092 |
echo "running: check_lapack_libs()" >> $LOGFILE |
echo "running: check_lapack_libs()" >> $LOGFILE |
1093 |
cat <<EOF > genmake_tla.F |
cat <<EOF > genmake_tla.F |
1283 |
DEVEL= |
DEVEL= |
1284 |
HAVE_TEST_L= |
HAVE_TEST_L= |
1285 |
|
|
1286 |
# comment this line out to enable lapack test |
# set this to "t" to enable lapack test |
1287 |
SKIP_LAPACK_CHECK=t |
CHECK_FOR_LAPACK=f |
1288 |
|
|
1289 |
# DEFINES checked by test compilation or command-line |
# DEFINES checked by test compilation or command-line |
1290 |
HAVE_SYSTEM= |
HAVE_SYSTEM= |
1331 |
FS90= |
FS90= |
1332 |
|
|
1333 |
AUTODIFF_PKG_USED=f |
AUTODIFF_PKG_USED=f |
1334 |
|
OPENAD= |
1335 |
AD_OPTFILE= |
AD_OPTFILE= |
1336 |
|
CAT_SRC_FOR_TAF=1 |
1337 |
TAF= |
TAF= |
1338 |
AD_TAF_FLAGS= |
AD_TAF_FLAGS= |
1339 |
FTL_TAF_FLAGS= |
FTL_TAF_FLAGS= |
1363 |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH" |
1364 |
|
|
1365 |
# The following are all related to adjoint/tangent-linear stuff |
# The following are all related to adjoint/tangent-linear stuff |
1366 |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS" |
1367 |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS" |
1368 |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES" |
1369 |
|
|
1415 |
-optfile=* | --optfile=* | -of=* | --of=*) |
-optfile=* | --optfile=* | -of=* | --of=*) |
1416 |
OPTFILE=$ac_optarg ;; |
OPTFILE=$ac_optarg ;; |
1417 |
|
|
1418 |
|
-oad | --oad) |
1419 |
|
OPENAD="true" ; ALWAYS_USE_F90=1 ;; |
1420 |
|
-nocat4ad | -dog4ad | -ncad | -dad) |
1421 |
|
CAT_SRC_FOR_TAF=0 ;; |
1422 |
-adoptfile | --adoptfile | -adof | --adof) |
-adoptfile | --adoptfile | -adof | --adof) |
1423 |
ac_prev=AD_OPTFILE ;; |
ac_prev=AD_OPTFILE ;; |
1424 |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
-adoptfile=* | --adoptfile=* | -adof=* | --adof=*) |
1588 |
|
|
1589 |
done |
done |
1590 |
|
|
1591 |
TMP=./genmk_$$ |
#TMP=./genmk_$$ |
1592 |
#- try to put temporary files in system-local /tmp dir |
#- try to put temporary files in system-local /tmp dir |
1593 |
#TMP=/tmp/genmk_$$ |
TMP=/tmp/genmk_${USER}_$$ |
1594 |
#touch $TMP ; retVal=$? |
touch $TMP ; retVal=$? |
1595 |
#if [ $retVal -eq 0 ] ; then |
if [ $retVal -eq 0 ] ; then |
1596 |
# if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
if test ! -r $TMP ; then TMP=./genmk_$$ ; fi |
1597 |
#else |
else |
1598 |
# TMP=./genmk_$$ |
TMP=./genmk_$$ |
1599 |
#fi |
fi |
1600 |
#rm -f $TMP |
rm -f $TMP |
1601 |
##echo " temp files: $TMP.*" |
#echo " temp files: $TMP.*" |
1602 |
|
|
1603 |
printf " getting local config information: " |
printf " getting local config information: " |
1604 |
if test -f $gm_local ; then |
if test -f $gm_local ; then |
1692 |
|
|
1693 |
echo " getting AD_OPTFILE information:" |
echo " getting AD_OPTFILE information:" |
1694 |
if test "x${AD_OPTFILE}" = x ; then |
if test "x${AD_OPTFILE}" = x ; then |
1695 |
if test "x$MITGCM_AD_OF" = x ; then |
if test "x$MITGCM_AD_OF" != x ; then |
1696 |
|
AD_OPTFILE=$MITGCM_AD_OF |
1697 |
|
elif test "x$OPENAD" = x ; then |
1698 |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default |
1699 |
else |
else |
1700 |
AD_OPTFILE=$MITGCM_AD_OF |
AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad |
1701 |
fi |
fi |
1702 |
fi |
fi |
1703 |
if test "x${AD_OPTFILE}" != xNONE ; then |
if test "x${AD_OPTFILE}" != xNONE ; then |
1964 |
fi |
fi |
1965 |
rm -f genmake_tcomp* |
rm -f genmake_tcomp* |
1966 |
|
|
1967 |
printf " Do we have the etime() command using $FC... " |
printf " Do we have the etime() command using $FC... " |
1968 |
cat > genmake_tcomp.$FS <<EOF |
cat > genmake_tcomp_1.$FS <<EOF |
1969 |
program hello |
program hello |
1970 |
REAL*4 ACTUAL, TARRAY(2) |
REAL*4 actual, tarray(2) |
1971 |
EXTERNAL ETIME |
EXTERNAL ETIME |
1972 |
REAL*4 ETIME |
REAL*4 ETIME |
1973 |
actual = etime( tarray ) |
actual = ETIME( tarray ) |
1974 |
print *, tarray |
print *, tarray |
1975 |
end |
end |
1976 |
EOF |
EOF |
1977 |
$FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1 |
$FC $FFLAGS -o genmake_tcomp_1 genmake_tcomp_1.$FS > genmake_tcomp.log 2>&1 |
1978 |
RETVAL=$? |
RETVAL=$? |
1979 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" = x0 ; then |
1980 |
HAVE_ETIME=t |
HAVE_ETIME='Fct' |
1981 |
DEFINES="$DEFINES -DHAVE_ETIME" |
DEFINES="$DEFINES -DHAVE_ETIME_FCT" |
1982 |
echo "yes" |
echo " yes (${HAVE_ETIME})" |
1983 |
else |
else |
1984 |
|
cat > genmake_tcomp_2.$FS <<EOF |
1985 |
|
program hello |
1986 |
|
REAL*4 actual, tarray(2) |
1987 |
|
actual = -999. |
1988 |
|
call ETIME( tarray, actual ) |
1989 |
|
if ( actual.ge.0. ) then |
1990 |
|
print *, 0, tarray, actual |
1991 |
|
else |
1992 |
|
print *, 1, tarray, actual |
1993 |
|
endif |
1994 |
|
end |
1995 |
|
EOF |
1996 |
|
$FC $FFLAGS -o genmake_tcomp_2 genmake_tcomp_2.$FS >> genmake_tcomp.log 2>&1 |
1997 |
|
RETVAL=$? |
1998 |
|
if test "x$RETVAL" = x0 ; then |
1999 |
|
echo -n 'c,' |
2000 |
|
./genmake_tcomp_2 > genmake_tcomp_2.out 2>&1 |
2001 |
|
RETVAL=$? |
2002 |
|
fi |
2003 |
|
if test "x$RETVAL" = x0 ; then |
2004 |
|
echo -n 'r:' |
2005 |
|
RETVAL=`cat genmake_tcomp_2.out | $AWK '{print $1}'` |
2006 |
|
fi |
2007 |
|
if test "x$RETVAL" = x0 ; then |
2008 |
|
HAVE_ETIME='SbR' |
2009 |
|
DEFINES="$DEFINES -DHAVE_ETIME_SBR" |
2010 |
|
echo " yes (${HAVE_ETIME})" |
2011 |
|
else |
2012 |
HAVE_ETIME= |
HAVE_ETIME= |
2013 |
echo "no" |
echo " no" |
2014 |
|
fi |
2015 |
fi |
fi |
2016 |
|
#mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime |
2017 |
rm -f genmake_tcomp* |
rm -f genmake_tcomp* |
2018 |
|
|
2019 |
printf " Can we call simple C routines (here, \"cloc()\") using $FC... " |
printf " Can we call simple C routines (here, \"cloc()\") using $FC... " |
2400 |
fi |
fi |
2401 |
fi |
fi |
2402 |
|
|
2403 |
# Check for package RADTRANS: if LAPACK is not available, |
# Make sure the openad package is enabled if using OpenAD |
2404 |
# then issue a warning that the direct radtrans solver is not available. |
if test "x$OPENAD" != x ; then |
2405 |
if test "x$HAVE_LAPACK" != xt ; then |
echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1 |
|
echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1 |
|
2406 |
RETVAL=$? |
RETVAL=$? |
2407 |
if test "x$RETVAL" = x0 ; then |
if test "x$RETVAL" != x0 ; then |
2408 |
cat <<EOF |
cat <<EOF |
|
********************************************************************* |
|
|
WARNING: the "radtrans" package was enabled but tests failed to |
|
|
compile LAPACK applications. This means that the direct radtrans |
|
|
solver is not available and compilation will fail if it is enabled. |
|
|
If you want to use the direct solver, please check that: |
|
2409 |
|
|
|
1) LAPACK is correctly installed for this compiler and |
|
|
2) the LIBS variable (within the "optfile") specifies the correct |
|
|
LAPACK library to link against. |
|
2410 |
********************************************************************* |
********************************************************************* |
2411 |
|
ERROR: when generating an adjoint with OpenAD, the openad package |
2412 |
|
must be enabled. Please add it to packages.conf. |
2413 |
|
********************************************************************* |
2414 |
|
|
2415 |
EOF |
EOF |
2416 |
|
exit 1 |
2417 |
fi |
fi |
2418 |
fi |
fi |
2419 |
|
|
2668 |
OAD_CB2M_FILES="/dev/null" |
OAD_CB2M_FILES="/dev/null" |
2669 |
OADTOOLS="$TOOLSDIR/OAD_support" |
OADTOOLS="$TOOLSDIR/OAD_support" |
2670 |
echo " looking for dontCompile file: " |
echo " looking for dontCompile file: " |
2671 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2672 |
if test -r $i"/dontCompile" ; then |
if test -r $i"/dontCompile" ; then |
2673 |
OAD_DONT_COMPILE=$i"/dontCompile" |
OAD_DONT_COMPILE=$i"/dontCompile" |
2674 |
echo " found $OAD_DONT_COMPILE" |
echo " found $OAD_DONT_COMPILE" |
2676 |
fi |
fi |
2677 |
done |
done |
2678 |
echo " looking for dontTransform file: " |
echo " looking for dontTransform file: " |
2679 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2680 |
if test -r $i"/dontTransform" ; then |
if test -r $i"/dontTransform" ; then |
2681 |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
OAD_DONT_TRANSFORM=$i"/dontTransform" |
2682 |
echo " found $OAD_DONT_TRANSFORM" |
echo " found $OAD_DONT_TRANSFORM" |
2684 |
fi |
fi |
2685 |
done |
done |
2686 |
echo " looking for keepOriginal file: " |
echo " looking for keepOriginal file: " |
2687 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2688 |
if test -r $i"/keepOriginal" ; then |
if test -r $i"/keepOriginal" ; then |
2689 |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
OAD_KEEP_ORIGINAL=$i"/keepOriginal" |
2690 |
echo " found $OAD_KEEP_ORIGINAL" |
echo " found $OAD_KEEP_ORIGINAL" |
2692 |
fi |
fi |
2693 |
done |
done |
2694 |
echo " looking for cb2mFiles: " |
echo " looking for cb2mFiles: " |
2695 |
for i in "." $MODS ; do |
for i in "." $MODS $OADTOOLS ; do |
2696 |
if test -r $i"/cb2mFiles" ; then |
if test -r $i"/cb2mFiles" ; then |
2697 |
OAD_CB2M_FILES=$i"/cb2mFiles" |
OAD_CB2M_FILES=$i"/cb2mFiles" |
2698 |
echo " found $OAD_CB2M_FILES" |
echo " found $OAD_CB2M_FILES" |
2931 |
KFLAGS1 = ${KFLAGS1} |
KFLAGS1 = ${KFLAGS1} |
2932 |
KFLAGS2 = ${KFLAGS2} |
KFLAGS2 = ${KFLAGS2} |
2933 |
# Optim./debug for FC |
# Optim./debug for FC |
2934 |
FFLAGS = ${FFLAGS} ${FEXTRAFLAGS} |
FFLAGS = ${FFLAGS} |
2935 |
FOPTIM = ${FOPTIM} |
FOPTIM = ${FOPTIM} ${FEXTRAFLAGS} |
2936 |
# Optim./debug for FC |
# Optim./debug for FC |
2937 |
F90FLAGS = ${F90FLAGS} |
F90FLAGS = ${F90FLAGS} |
2938 |
F90OPTIM = ${F90OPTIM} |
F90OPTIM = ${F90OPTIM} |
3008 |
|
|
3009 |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES) |
3010 |
|
|
|
output.txt: \$(EXECUTABLE) |
|
|
@printf 'running ... ' |
|
|
@\$(EXECUTABLE) > \$@ |
|
|
|
|
3011 |
# remove most of the files that "make" generates |
# remove most of the files that "make" generates |
3012 |
clean: |
clean: |
3013 |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
-rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template |
3159 |
echo >> $MAKEFILE |
echo >> $MAKEFILE |
3160 |
rm -f $TMP.adSrcFiles |
rm -f $TMP.adSrcFiles |
3161 |
|
|
3162 |
|
if test $CAT_SRC_FOR_TAF = 0 ; then |
3163 |
|
cat >>$MAKEFILE <<EOF |
3164 |
|
|
3165 |
|
# ... Utilities ... |
3166 |
|
remove_comments: |
3167 |
|
sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES) |
3168 |
|
@-rm -f \$(AD_FILES:.$FS=.$FS.bak) |
3169 |
|
adj_sed: |
3170 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS) |
3171 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak) |
3172 |
|
ftl_sed: |
3173 |
|
sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS) |
3174 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak) |
3175 |
|
adobjfiles: \$(AD_FILES:.$FS=_ad.o) |
3176 |
|
ftlobjfiles: \$(AD_FILES:.$FS=_tl.o) |
3177 |
|
EOF |
3178 |
|
fi |
3179 |
|
|
3180 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3181 |
|
|
3182 |
# ... AD ... |
# ... AD ... |
3199 |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3200 |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS |
3201 |
|
|
3202 |
ad_taf_output.$FS: ad_input_code.$FS |
adtafonly: |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
|
3203 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3204 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3205 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3206 |
|
|
3207 |
adtafonly: |
EOF |
3208 |
|
|
3209 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3210 |
|
cat >>$MAKEFILE <<EOF |
3211 |
|
# ... send 1 file to TAF ... |
3212 |
|
ad_taf_output.$FS: ad_input_code.$FS |
3213 |
|
@-rm -f ad_input_code_ad.$FS ; echo '' |
3214 |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS |
3215 |
ls -l ad_input_code_ad.$FS |
ls -l ad_input_code_ad.$FS |
3216 |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS |
3218 |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3219 |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3220 |
|
|
3221 |
ad_tamc_output.$FS: ad_input_code.$FS |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
|
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
|
3222 |
|
|
3223 |
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
EOF |
3224 |
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
|
3225 |
|
else |
3226 |
|
cat >>$MAKEFILE <<EOF |
3227 |
|
# ... send multiple files to TAF ... |
3228 |
|
ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3229 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3230 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3231 |
|
@-rm -f ad_config.template |
3232 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3233 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES) |
3234 |
|
@-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo '' |
3235 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3236 |
|
\$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES) |
3237 |
|
\$(MAKE) -f \$(MAKEFILE) adj_sed |
3238 |
|
cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS |
3239 |
|
|
3240 |
|
\$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3241 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3242 |
|
\$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3243 |
|
|
3244 |
|
adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
3245 |
|
\$(MAKE) -f \$(MAKEFILE) adobjfiles |
3246 |
|
|
3247 |
|
EOF |
3248 |
|
fi |
3249 |
|
|
3250 |
|
cat >>$MAKEFILE <<EOF |
3251 |
adonlyfwd: |
adonlyfwd: |
3252 |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff |
3253 |
|
|
3254 |
adtrick: |
adtrick: |
3255 |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff |
3256 |
|
|
3257 |
adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) |
ad_tamc_output.$FS: ad_input_code.$FS |
3258 |
|
\$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS |
3259 |
|
cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS |
3260 |
|
|
3261 |
|
ad_tamc: ad_tamc_output.o \$(OBJFILES) |
3262 |
|
\$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) |
3263 |
|
|
3264 |
# ... FTL ... |
# ... FTL ... |
3265 |
ftlall: ftl_exe_target |
ftlall: ftl_exe_target |
3281 |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3282 |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS |
3283 |
|
|
3284 |
ftl_taf_output.$FS: ftl_input_code.$FS |
ftltafonly: |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
|
3285 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3286 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3287 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3288 |
|
|
3289 |
ftltafonly: |
EOF |
3290 |
|
|
3291 |
|
if test $CAT_SRC_FOR_TAF = 1 ; then |
3292 |
|
cat >>$MAKEFILE <<EOF |
3293 |
|
# ... send 1 file to TAF ... |
3294 |
|
ftl_taf_output.$FS: ftl_input_code.$FS |
3295 |
|
@-rm -f ftl_input_code_tl.$FS ; echo '' |
3296 |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS |
3297 |
ls -l ftl_input_code_tl.$FS |
ls -l ftl_input_code_tl.$FS |
3298 |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS |
3300 |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3301 |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3302 |
|
|
3303 |
|
EOF |
3304 |
|
|
3305 |
|
else |
3306 |
|
cat >>$MAKEFILE <<EOF |
3307 |
|
# ... send multiple files to TAF ... |
3308 |
|
ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES) |
3309 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template |
3310 |
|
cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3311 |
|
@-rm -f ad_config.template |
3312 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES) |
3313 |
|
@\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES) |
3314 |
|
@-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo '' |
3315 |
|
\$(MAKE) -f \$(MAKEFILE) remove_comments |
3316 |
|
\$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES) |
3317 |
|
\$(MAKE) -f \$(MAKEFILE) ftl_sed |
3318 |
|
cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS |
3319 |
|
|
3320 |
|
\$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES) |
3321 |
|
\$(MAKE) -f \$(MAKEFILE) ftlobjfiles |
3322 |
|
\$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS) |
3323 |
|
|
3324 |
|
EOF |
3325 |
|
fi |
3326 |
|
|
3327 |
|
cat >>$MAKEFILE <<EOF |
3328 |
ftl_tamc_output.$FS: ftl_input_code.$FS |
ftl_tamc_output.$FS: ftl_input_code.$FS |
3329 |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
\$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS |
3330 |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS |
3367 |
# ============ begin OpenAD specific section ============== |
# ============ begin OpenAD specific section ============== |
3368 |
|
|
3369 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3370 |
|
# ... OpenAD ... |
3371 |
|
|
3372 |
# all the source files linked from the various locations: |
# all the source files linked from the various locations: |
3373 |
ALL_LINKED_FILES= \ |
ALL_LINKED_FILES= \ |
3421 |
|
|
3422 |
cat >>$MAKEFILE <<EOF |
cat >>$MAKEFILE <<EOF |
3423 |
|
|
3424 |
adAll: \$(EXE_AD) |
adAll: ad_exe_target |
3425 |
.PHONY: adAll |
.PHONY: adAll |
3426 |
|
|
3427 |
|
ad_exe_target: |
3428 |
|
@echo Update AD_CONFIG.h and make \$(EXE_AD) |
3429 |
|
@$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template |
3430 |
|
@cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h |
3431 |
|
@-rm -f ad_config.template |
3432 |
|
\$(MAKE) -f \$(MAKEFILE) \$(EXE_AD) |
3433 |
|
|
3434 |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES)) |
3435 |
|
|
3436 |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
.PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) |
3447 |
OAD_cp.F90 \ |
OAD_cp.F90 \ |
3448 |
OAD_rev.F90 \ |
OAD_rev.F90 \ |
3449 |
OAD_tape.F90 \ |
OAD_tape.F90 \ |
3450 |
|
OAD_regular_cp.F90 \ |
3451 |
revolve.F90 |
revolve.F90 |
3452 |
|
|
3453 |
OPENAD_SUPPORT_C_SRC_FILES = \ |
OPENAD_SUPPORT_C_SRC_FILES = \ |
3489 |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
small_f: \$(CB2M_F90_PP_SRC_FILES) |
3490 |
.PHONY: small_f |
.PHONY: small_f |
3491 |
|
|
|
ad_output.txt: \$(EXE_AD) |
|
|
@printf 'linking data files ... ' |
|
|
\$(LN) -f ../input_ad/data* ../input_ad/eedata . |
|
|
\$(LN) -f ../../global_ocean.90x40x15/input/*.bin . |
|
|
@printf 'running ... ' |
|
|
@./\$(EXE_AD) > \$@ |
|
|
|
|
3492 |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
ad_input_code.f$FS90: \$(CB2M_AD_FILES) |
3493 |
cat \$^ > \$@ |
cat \$^ > \$@ |
3494 |
|
|