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Revision 1.181 - (hide annotations) (download)
Fri Jan 2 20:32:21 2009 UTC (10 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.180: +8 -1 lines
add an "EXTENDED_SRC" option and flag. For now, cannot be turned on
 on command line (only through genmake_local).

1 edhill 1.86 #! /usr/bin/env bash
2 edhill 1.1 #
3 jmc 1.181 # $Header: /u/gcmpack/MITgcm/tools/genmake2,v 1.180 2008/12/11 17:50:56 utke Exp $
4 edhill 1.1 #
5     # Makefile generator for MITgcm UV codes
6     # created by cnh 03/98
7     # adapted by aja 06/98
8     # modified by aja 01/00
9     # rewritten in bash by eh3 08/03
10    
11 edhill 1.12 # Search for particular CPP #cmds associated with packages
12     # usage: test_for_package_in_cpp_options CPP_file package_name
13     test_for_package_in_cpp_options() {
14     cpp_options=$1
15     pkg=$2
16 edhill 1.146 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24 adcroft 1.52 }
25    
26     # Search for particular CPP #cmds associated with MPI
27     # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28     test_for_mpi_in_cpp_eeoptions() {
29     cpp_options=$1
30 edhill 1.146 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38 adcroft 1.52 }
39    
40     # Search for particular string in a file. Return 1 if detected, 0 if not
41     # usage: test_for_string_in_file file string
42     test_for_string_in_file() {
43     file=$1
44     strng=$2
45     grep -i "$strng" $file > /dev/null 2>&1
46 edhill 1.12 RETVAL=$?
47     if test "x${RETVAL}" = x0 ; then
48 edhill 1.71 printf "Error: In $file there is an illegal line: "
49 adcroft 1.52 grep -i "$strng" $file
50 edhill 1.146 exit 99
51 edhill 1.12 fi
52 adcroft 1.52 return 0
53 edhill 1.12 }
54    
55     # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
56     # the package list.
57     expand_pkg_groups() {
58     new_packages=
59     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60     if test -r $PKG_GROUPS ; then
61     cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62 edhill 1.15 cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63 edhill 1.12 matched=0
64     for i in $PACKAGES ; do
65     line=`grep "^ *$i" ./p2.tmp`
66     RETVAL=$?
67     if test "x$RETVAL" = x0 ; then
68     matched=1
69 edhill 1.15 replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70 edhill 1.12 echo " replacing \"$i\" with: $replace"
71     new_packages="$new_packages $replace"
72     else
73     new_packages="$new_packages $i"
74     fi
75     done
76     PACKAGES=$new_packages
77     rm -f ./p[1,2].tmp
78 adcroft 1.74 return $matched
79 edhill 1.12 else
80     echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81     fi
82     }
83 edhill 1.1
84 edhill 1.75 # Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85     # cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86     check_for_broken_Ff() {
87 edhill 1.76 # Do we have defaults for $FS and/or $FS90 ?
88     tfs=f
89     tfs9=f90
90     if test "x$FS" != x ; then
91     tfs="$FS"
92     fi
93     if test "x$FS90" != x ; then
94     tfs9="$FS90"
95     fi
96    
97 edhill 1.75 # First check the ability to create a *.F/.f pair.
98 edhill 1.76 cat <<EOF >> genmake_hello.F
99 edhill 1.75 program hello
100     write(*,*) 'hi'
101     stop
102     end
103     EOF
104 edhill 1.76 cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105 edhill 1.75 RETVAL=$?
106     if test "x$RETVAL" != x0 ; then
107 edhill 1.76 if test "x$FS" = x ; then
108 edhill 1.77 FS='for'
109     FS90='fr9'
110 edhill 1.76 check_for_broken_Ff
111     else
112     cat <<EOF 2>&1
113     ERROR: Your file system cannot distinguish between *.F and *.f files
114     (fails the "cp" test) and this program cannot find a suitable
115     replacement extension. Please try a different build environment or
116     contact the <MITgcm-support@mitgcm.org> list for help.
117    
118     EOF
119     exit -1
120     fi
121 edhill 1.75 return
122     fi
123 edhill 1.76 rm -f genmake_hello.*
124 edhill 1.75
125 edhill 1.76 # Check the ability of ${MAKE} and ${LN} to use the current set
126     # of extensions.
127     cat <<EOF >> genmake_hello.F
128     program hello
129     write(*,*) 'hi'
130     stop
131     end
132     EOF
133 edhill 1.119 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
134     cat <<EOF >> $MAKEFILE
135 edhill 1.75 .SUFFIXES:
136 edhill 1.101 .SUFFIXES: .$tfs .F
137     .F.$tfs:
138     $LN \$< \$@
139 edhill 1.75 EOF
140 edhill 1.76 $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141 edhill 1.75 RETVAL=$?
142 edhill 1.88 if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143 edhill 1.76 if test "x$FS" = x ; then
144 edhill 1.77 FS='for'
145     FS90='fr9'
146 edhill 1.76 check_for_broken_Ff
147     else
148     cat <<EOF 2>&1
149     ERROR: Your file system cannot distinguish between *.F and *.f files
150     (fails the "make/ln" test) and this program cannot find a suitable
151     replacement extension. Please try a different build environment or
152     contact the <MITgcm-support@mitgcm.org> list for help.
153    
154     EOF
155     exit -1
156     return
157     fi
158 edhill 1.75 fi
159 edhill 1.119 rm -f genmake_hello.* $MAKEFILE
160     test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
161 edhill 1.75
162 edhill 1.76 # If we make it here, use the extensions
163     FS=$tfs
164     FS90=$tfs9
165     return
166 edhill 1.75 }
167    
168    
169 edhill 1.84 look_for_makedepend() {
170 adcroft 1.33
171 edhill 1.69 # The "original" makedepend is part of the Imake system that is
172     # most often distributed with XFree86 or with an XFree86 source
173     # package. As a result, many machines (eg. generic Linux) do not
174     # have a system-default "makedepend" available. For those
175     # systems, we have two fall-back options:
176     #
177     # 1) a makedepend implementation shipped with the cyrus-imapd
178     # package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179     #
180     # 2) a known-buggy xmakedpend shell script
181     #
182     # So the choices are, in order:
183     #
184     # 1) use the user-specified program
185     # 2) use a system-wide default
186     # 3) locally build and use the cyrus implementation
187     # 4) fall back to the buggy local xmakedpend script
188     #
189 adcroft 1.33 if test "x${MAKEDEPEND}" = x ; then
190 edhill 1.85 which makedepend > /dev/null 2>&1
191     RV0=$?
192 edhill 1.119 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
193     # echo 'MAKEFILE="'$MAKEFILE'"'
194     cat <<EOF >> $MAKEFILE
195     # THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196     #
197     # Some "makedepend" implementations will die if they cannot
198     # find a Makefile -- so this file is here to gives them an
199     # empty one to find and parse.
200     EOF
201 edhill 1.85 cat <<EOF >> genmake_tc.f
202 edhill 1.77 program test
203     write(*,*) 'test'
204     stop
205     end
206     EOF
207 edhill 1.85 makedepend genmake_tc.f > /dev/null 2>&1
208 mlosch 1.120 RV1=$?
209 edhill 1.119 test -f $MAKEFILE && rm -f $MAKEFILE
210     test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
211 edhill 1.85 if test "x${RV0}${RV1}" = x00 ; then
212     MAKEDEPEND=makedepend
213     else
214     echo " a system-default makedepend was not found."
215    
216     # Try to build the cyrus implementation
217 edhill 1.90 build_cyrus_makedepend
218 edhill 1.85 RETVAL=$?
219 edhill 1.90 if test "x$RETVAL" != x0 ; then
220 edhill 1.85 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221     fi
222     rm -f ./genmake_cy_md
223     fi
224 edhill 1.90 else
225     # echo "MAKEDEPEND=${MAKEDEPEND}"
226     echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227     RETVAL=$?
228     if test x"$RETVAL" = x0 ; then
229     build_cyrus_makedepend
230     fi
231 edhill 1.1 fi
232 edhill 1.84 }
233    
234    
235 edhill 1.90 build_cyrus_makedepend() {
236     rm -f ./genmake_cy_md
237     (
238     cd $ROOTDIR/tools/cyrus-imapd-makedepend \
239     && ./configure > /dev/null 2>&1 \
240     && make > /dev/null 2>&1
241     if test -x ./makedepend.exe ; then
242     $LN ./makedepend.exe ./makedepend
243     fi
244     ./makedepend ifparser.c > /dev/null 2>&1 \
245     && echo "true"
246     ) > ./genmake_cy_md
247     grep true ./genmake_cy_md > /dev/null 2>&1
248     RETVAL=$?
249     rm -f ./genmake_cy_md
250     if test "x$RETVAL" = x0 ; then
251     MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252     return 0
253     else
254     echo "WARNING: unable to build cyrus-imapd-makedepend"
255     return 1
256     fi
257     }
258    
259 edhill 1.141
260     build_embed_encode()
261     {
262     printf " building the embed-encode utility... "
263     if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264     if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265     echo
266     echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267     echo
268     EMBED_SRC=f
269     return 1
270     fi
271     clist="cc gcc c89 $CC"
272     for ic in $clist ; do
273     comm="$ic -o encode_files encode_files.c"
274     ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275     RETVAL=$?
276     if test "x$RETVAL" = x0 ; then
277     echo "OK"
278     DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279     return 0
280     fi
281     done
282     echo
283     echo " Error: unable to build $ROOTDIR/embed_encode/encode_files"
284     echo " so it has been disabled"
285     echo
286     EMBED_SRC=f
287     return 1
288     fi
289     echo "OK"
290     DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291     }
292    
293    
294 edhill 1.84 # Guess possible config options for this host
295     find_possible_configs() {
296    
297     tmp1=`uname`"_"`uname -m`
298     tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303     PLATFORM=$tmp3
304     echo $PLATFORM | grep cygwin > /dev/null 2>&1 && PLATFORM=cygwin_ia32
305     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306     echo " The platform appears to be: $PLATFORM"
307    
308     echo "test" > test
309     ln -s ./test link
310     RETVAL=$?
311     if test "x${RETVAL}" = x0 ; then
312     LN="ln -s"
313     else
314     echo "Error: \"ln -s\" does not appear to work on this system!"
315     echo " For help, please contact <MITgcm-support@mitgcm.org>."
316     exit 1
317     fi
318     rm -f test link
319    
320     if test "x$CPP" = x ; then
321     CPP="cpp -traditional -P"
322     fi
323    
324     look_for_makedepend
325 edhill 1.1
326 edhill 1.91 #================================================================
327     # look for possible C compilers
328 heimbach 1.158 tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329 edhill 1.91 p_CC=
330     for c in $tmp ; do
331     rm -f ./genmake_hello.c ./genmake_hello
332     cat >> genmake_hello.c << EOF
333     #include <stdio.h>
334     int main(int argc, char **argv) {
335     printf("Hello!\n");
336     return 0;
337     }
338     EOF
339     $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340     RETVAL=$?
341     if test "x${RETVAL}" = x0 ; then
342     p_CC="$p_CC $c"
343     fi
344     done
345     rm -f ./genmake_hello.c ./genmake_hello
346     if test "x${p_CC}" = x ; then
347     cat 1>&2 <<EOF
348    
349     Error: No C compilers were found in your path. Please specify one using:
350    
351     1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352     2) the CC or MITGCM_CC environment variables.
353    
354     EOF
355     exit 1
356     else
357     echo " The possible C compilers found in your path are:"
358     echo " "$p_CC
359     if test "x$CC" = x ; then
360     CC=`echo $p_CC | $AWK '{print $1}'`
361     echo " Setting C compiler to: "$CC
362     fi
363     fi
364    
365     #================================================================
366     # look for possible FORTRAN compilers
367 heimbach 1.158 tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368 edhill 1.1 p_FC=
369 edhill 1.11 for c in $tmp ; do
370     rm -f ./hello.f ./hello
371     cat >> hello.f <<EOF
372     program hello
373     do i=1,3
374     print *, 'hello world : ', i
375     enddo
376     end
377     EOF
378     $c -o hello hello.f > /dev/null 2>&1
379 edhill 1.1 RETVAL=$?
380     if test "x${RETVAL}" = x0 ; then
381     p_FC="$p_FC $c"
382     fi
383     done
384 edhill 1.21 rm -f ./hello.f ./hello
385 edhill 1.1 if test "x${p_FC}" = x ; then
386 edhill 1.11 cat 1>&2 <<EOF
387    
388     Error: No Fortran compilers were found in your path. Please specify one using:
389    
390     1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391     2) a command-line option (eg. "-fc NAME"), or
392 edhill 1.91 3) the FC or MITGCM_FC environment variables.
393 edhill 1.11
394     EOF
395     exit 1
396 edhill 1.1 else
397 edhill 1.11 echo " The possible FORTRAN compilers found in your path are:"
398     echo " "$p_FC
399 edhill 1.136 fi
400    
401     # Use the first of the compilers found in the current PATH
402     # that has a correctly-named optfile
403     if test "x$OPTFILE" = x -a "x$FC" = x ; then
404     for i in $p_FC ; do
405     OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406     if test -r $OPTFILE ; then
407     echo " Setting OPTFILE to: "$OPTFILE
408     break
409     fi
410     done
411 edhill 1.1 fi
412    
413 adcroft 1.67 if test "x$OPTFILE" = x ; then
414     OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415     if test ! -r $OPTFILE ; then
416     echo " I looked for the file "$OPTFILE" but did not find it"
417     fi
418     fi
419     # echo " The options file: $p_OF"
420     # echo " appears to match so we'll use it."
421     # for i in $p_FC ; do
422     #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423     #if test -r $p_OF ; then
424     # OPTFILE=$p_OF
425     # echo " The options file: $p_OF"
426     # echo " appears to match so we'll use it."
427     # break
428     #fi
429     # done
430 edhill 1.11 if test "x$OPTFILE" = x ; then
431     cat 1>&2 <<EOF
432    
433     Error: No options file was found in: $ROOTDIR/tools/build_options/
434     that matches this platform ("$PLATFORM") and the compilers found in
435     your path. Please specify an "optfile" using:
436    
437     1) the command line (eg. "-optfile=path/to/OPTFILE"), or
438     2) the MITGCM_OF environment variable.
439    
440     If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
441    
442 edhill 1.1 EOF
443 edhill 1.11 exit 1
444 edhill 1.1 fi
445 edhill 1.11
446     # # look for possible MPI libraries
447     # mpi_libs=
448     # mpi_fort=`which mpif77 2>/dev/null`
449     # RETVAL=$?
450     # if test "x${RETVAL}" = x0 ; then
451     # cat >>test.f <<EOF
452     # PROGRAM HELLO
453     # DO 10, I=1,10
454     # PRINT *,'Hello World'
455     # 10 CONTINUE
456     # STOP
457     # END
458     # EOF
459     # eval "$mpi_fort -showme test.f > out"
460     # RETVAL=$?
461     # if test "x${RETVAL}" = x0 ; then
462     # a=`cat out`
463     # for i in $a ; do
464     # case $i in
465     # -*)
466     # mpi_libs="$mpi_libs $i" ;;
467     # esac
468     # done
469     # echo "The MPI libs appear to be:"
470     # echo " "$mpi_libs
471     # fi
472     # rm -f test.f out
473     # fi
474 edhill 1.1
475     }
476    
477     # Parse the package dependency information
478     get_pdepend_list() {
479    
480     # strip the comments and then convert the dependency file into
481     # two arrays: PNAME, DNAME
482     cat $1 | sed -e 's/#.*$//g' \
483 edhill 1.15 | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484 edhill 1.1 > ./.pd_tmp
485 edhill 1.34 . ./.pd_tmp
486 edhill 1.1 rm -f ./.pd_tmp
487    
488 edhill 1.71 printf "PNAME = "${}
489 edhill 1.1 }
490    
491    
492     # Explain usage
493     usage() {
494 edhill 1.41 cat <<EOF
495    
496     Usage: "$0" [OPTIONS]
497     where [OPTIONS] can be:
498    
499     -help | --help | -h | --h
500     Print this help message and exit.
501 edhill 1.79
502     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503     -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504     Use "NAME" as the adoptfile. By default, the file at
505     "tools/adjoint_options/adjoint_default" will be used.
506 edhill 1.41
507     -nooptfile | --nooptfile
508     -optfile NAME | --optfile NAME | -of NAME | --of NAME
509     -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510     Use "NAME" as the optfile. By default, an attempt will be
511     made to find an appropriate "standard" optfile in the
512     tools/build_options/ directory.
513    
514     -pdepend NAME | --pdepend NAME
515     -pdepend=NAME | --pdepend=NAME
516     Get package dependency information from "NAME".
517    
518     -pdefault NAME | --pdefault NAME
519     -pdefault=NAME | --pdefault=NAME
520     Get the default package list from "NAME".
521    
522     -make NAME | -m NAME
523     --make=NAME | -m=NAME
524     Use "NAME" for the MAKE program. The default is "make" but
525     many platforms, "gmake" is the preferred choice.
526    
527     -makefile NAME | -mf NAME
528     --makefile=NAME | -mf=NAME
529     Call the makefile "NAME". The default is "Makefile".
530    
531 edhill 1.69 -makedepend NAME | -md NAME
532     --makedepend=NAME | -md=NAME
533     Use "NAME" for the MAKEDEPEND program.
534    
535 edhill 1.41 -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536     -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537     Specify the location of the MITgcm ROOTDIR as "NAME".
538     By default, genamke will try to find the location by
539     looking in parent directories (up to the 5th parent).
540    
541     -mods NAME | --mods NAME | -mo NAME | --mo NAME
542     -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543     Here, "NAME" specifies a list of directories that are
544     used for additional source code. Files found in the
545     "mods list" are given preference over files of the same
546     name found elsewhere.
547    
548     -disable NAME | --disable NAME
549     -disable=NAME | --disable=NAME
550     Here "NAME" specifies a list of packages that we don't
551     want to use. If this violates package dependencies,
552     genamke will exit with an error message.
553    
554     -enable NAME | --enable NAME
555     -enable=NAME | --enable=NAME
556     Here "NAME" specifies a list of packages that we wish
557     to specifically enable. If this violates package
558     dependencies, genamke will exit with an error message.
559    
560     -standarddirs NAME | --standarddirs NAME
561     -standarddirs=NAME | --standarddirs=NAME
562     Here, "NAME" specifies a list of directories to be
563     used as the "standard" code.
564    
565     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566     -fc=NAME | --fc=NAME
567     Use "NAME" as the fortran compiler. By default, genmake
568     will search for a working compiler by trying a list of
569     "usual suspects" such as g77, f77, etc.
570    
571 edhill 1.91 -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572     Use "NAME" as the C compiler. By default, genmake
573     will search for a working compiler by trying a list of
574     "usual suspects" such as gcc, c89, cc, etc.
575    
576 edhill 1.41 -[no]ieee | --[no]ieee
577     Do or don't use IEEE numerics. Note that this option
578     *only* works if it is supported by the OPTFILE that
579     is being used.
580    
581 edhill 1.143 -ignoretime | -ignore_time | --ignoretime | --ignore_time
582     Ignore all the "wall clock" routines entirely. This will
583     not in any way hurt the model results -- it simply means
584     that the code that checks how long the model spends in
585     various routines will give junk values.
586    
587 ce107 1.126 -ts | --ts
588     Produce timing information per timestep
589 ce107 1.139 -papis | --papis
590 ce107 1.147 Produce summary MFlop/s (and IPC) with PAPI per timestep
591     -pcls | --pcls
592     Produce summary MFlop/s etc. with PCL per timestep
593 ce107 1.139 -foolad | --foolad
594     Fool the AD code generator
595     -papi | --papi
596     Performance analysis with PAPI
597 ce107 1.147 -pcl | --pcl
598     Performance analysis with PCL
599 ce107 1.139 -hpmt | --hpmt
600     Performance analysis with the HPM Toolkit
601    
602     -gsl | --gsl
603     Use GSL to control floating point rounding and precision
604 ce107 1.160 -devel | --devel
605     Add additional warning and debugging flags for development
606 ce107 1.126
607 adcroft 1.67 -mpi | --mpi
608     Include MPI header files and link to MPI libraries
609     -mpi=PATH | --mpi=PATH
610     Include MPI header files and link to MPI libraries using MPI_ROOT
611 edhill 1.95 set to PATH. i.e. Include files from \$PATH/include, link to libraries
612     from \$PATH/lib and use binaries from \$PATH/bin.
613 adcroft 1.67
614 edhill 1.141 -es | --es | -embed-source | --embed-source
615     Embed a tarball containing the full source code
616     (including the Makefile, etc.) used to build the
617     executable [off by default]
618    
619 edhill 1.71 -bash NAME
620     Explicitly specify the Bourne or BASH shell to use
621    
622 edhill 1.41 While it is most often a single word, the "NAME" variables specified
623     above can in many cases be a space-delimited string such as:
624    
625     --enable pkg1 --enable 'pkg1 pkg2' --enable 'pkg1 pkg2 pkg3'
626     -mods=dir1 -mods='dir1' -mods='dir1 dir2 dir3'
627     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629     which, depending upon your shell, may need to be single-quoted.
630    
631     For more detailed genmake documentation, please see:
632    
633     http://mitgcm.org/devel_HOWTO/
634    
635     EOF
636    
637 edhill 1.1 exit 1
638     }
639    
640 edhill 1.31 # Build a CPP macro to automate calling C routines from FORTRAN
641     get_fortran_c_namemangling() {
642 edhill 1.89
643     #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644     if test ! "x$FC_NAMEMANGLE" = x ; then
645     return 0
646     fi
647    
648 edhill 1.31 default_nm="#define FC_NAMEMANGLE(X) X ## _"
649    
650     cat > genmake_test.c <<EOF
651     void tcall( char * string ) { tsub( string ); }
652     EOF
653 edhill 1.39 $MAKE genmake_test.o >> genmake_warnings 2>&1
654 edhill 1.31 RETVAL=$?
655     if test "x$RETVAL" != x0 ; then
656     FC_NAMEMANGLE=$default_nm
657 edhill 1.39 cat <<EOF>> genmake_errors
658    
659     WARNING: C test compile fails
660     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662     EOF
663 edhill 1.31 return 1
664     fi
665 edhill 1.91 c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666 edhill 1.31 RETVAL=$?
667     if test "x$RETVAL" != x0 ; then
668     FC_NAMEMANGLE=$default_nm
669 edhill 1.39 cat <<EOF>> genmake_warnings
670    
671     WARNING: The "nm" command failed.
672     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674     EOF
675 edhill 1.31 return 1
676     fi
677 edhill 1.118 cat > genmake_tcomp.$FS <<EOF
678 edhill 1.31 subroutine tcall( string )
679     character*(*) string
680     call tsub( string )
681     end
682     EOF
683 edhill 1.134 $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684 edhill 1.31 RETVAL=$?
685     if test "x$RETVAL" != x0 ; then
686     FC_NAMEMANGLE=$default_nm
687 edhill 1.39 cat <<EOF>> genmake_warnings
688    
689     WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692     EOF
693 edhill 1.31 return 1
694     fi
695 edhill 1.91 f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696 edhill 1.31 RETVAL=$?
697     if test "x$RETVAL" != x0 ; then
698     FC_NAMEMANGLE=$default_nm
699 edhill 1.39 cat <<EOF>> genmake_warnings
700    
701     WARNING: The "nm" command failed.
702     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704     EOF
705 edhill 1.31 return 1
706     fi
707    
708     c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709     f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710     c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711     f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713     nmangle="X"
714     if test "x$c_a" != "x$f_a" ; then
715     comm="echo x$f_a | sed -e 's|x$c_a||'"
716     a=`eval $comm`
717     nmangle="$a ## $nmangle"
718     fi
719     if test "x$c_b" != "x$f_b" ; then
720     comm="echo x$f_b | sed -e 's|x$c_b||'"
721     b=`eval $comm`
722     nmangle="$nmangle ## $b"
723     fi
724    
725     FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) $nmangle"
726 edhill 1.32
727     # cleanup the testing files
728     rm -f genmake_tcomp.* genmake_test.*
729 edhill 1.31 }
730 edhill 1.1
731 edhill 1.39
732     check_HAVE_CLOC() {
733     get_fortran_c_namemangling
734     cat <<EOF > genmake_tc_1.c
735     $FC_NAMEMANGLE
736     #include <stdio.h>
737     #include <stdlib.h>
738     #include <unistd.h>
739     #include <assert.h>
740     #include <sys/time.h>
741     void FC_NAMEMANGLE(cloc) ( double *curtim )
742     {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim = (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747     }
748     EOF
749 mlosch 1.168 COMM="$CC $CFLAGS -c genmake_tc_1.c"
750     echo $COMM >> genmake_warnings
751     $COMM >> genmake_warnings 2>&1
752 edhill 1.39 RET_C=$?
753 edhill 1.118 cat <<EOF > genmake_tc_2.$FS
754 edhill 1.39 program hello
755 edhill 1.129 REAL*8 wtime
756 edhill 1.39 external cloc
757     call cloc(wtime)
758     print *," HELLO WORLD", wtime
759 edhill 1.128 end
760 edhill 1.39 EOF
761 mlosch 1.163 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762     echo $COMM >> genmake_warnings
763     $COMM >> genmake_warnings 2>&1
764 edhill 1.39 RET_F=$?
765 edhill 1.118 test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1
766 edhill 1.39 RETVAL=$?
767     if test "x$RETVAL" = x0 ; then
768     HAVE_CLOC=t
769     DEFINES="$DEFINES -DHAVE_CLOC"
770     fi
771     rm -f genmake_tc*
772     }
773    
774    
775 edhill 1.137 check_HAVE_SIGREG() {
776 edhill 1.150 if test ! "x$HAVE_SIGREG" = x ; then
777     return
778     fi
779 edhill 1.137 get_fortran_c_namemangling
780     cat <<EOF > genmake_tc_1.c
781     $FC_NAMEMANGLE
782     #include <stdlib.h>
783     #include <stdio.h>
784     #include <signal.h>
785     #include <errno.h>
786     #include <ucontext.h>
787    
788     int * ip;
789    
790     static void killhandler(
791     unsigned int sn, siginfo_t si, struct ucontext *sc )
792     {
793     *ip = *ip + 1;
794     return;
795     }
796    
797     void FC_NAMEMANGLE(sigreg) (int * aip)
798     {
799 edhill 1.138 struct sigaction s;
800 edhill 1.137 ip = aip;
801     s.sa_flags = SA_SIGINFO;
802     s.sa_sigaction = (void *)killhandler;
803     if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804     printf("Sigaction returned error = %d\n", errno);
805     exit(0);
806     }
807     return;
808     }
809     EOF
810 mlosch 1.168 COMM="$CC $CFLAGS -c genmake_tc_1.c"
811     echo $COMM >> genmake_warnings
812     $COMM >> genmake_warnings 2>&1
813 edhill 1.137 RET_C=$?
814     cat <<EOF > genmake_tc_2.$FS
815     program hello
816     integer anint
817     common /iv/ anint
818     external sigreg
819     call sigreg(anint)
820     end
821     EOF
822     echo >> genmake_warnings
823     echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824     cat genmake_tc_2.$FS >> genmake_warnings
825     COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826     echo $COMM >> genmake_warnings
827     $COMM >> genmake_warnings 2>&1
828     RETVAL=$?
829     if test "x$RETVAL" = x0 ; then
830     HAVE_SIGREG=t
831     DEFINES="$DEFINES -DHAVE_SIGREG"
832     fi
833     rm -f genmake_tc*
834     }
835    
836    
837 edhill 1.130 check_HAVE_SETRLSTK() {
838 edhill 1.151 if test "x$HAVE_SETRLSTK" = xt ; then
839     DEFINES="$DEFINES -DHAVE_SETRLSTK"
840     return
841     fi
842     if test ! "x$HAVE_SETRLSTK" = x ; then
843     return
844     fi
845 edhill 1.130 get_fortran_c_namemangling
846     cat <<EOF > genmake_tc_1.c
847     $FC_NAMEMANGLE
848     #include <sys/time.h>
849     #include <sys/resource.h>
850     #include <unistd.h>
851     void FC_NAMEMANGLE(setrlstk) ()
852     {
853     struct rlimit rls;
854     rls.rlim_cur = RLIM_INFINITY;
855     rls.rlim_max = RLIM_INFINITY;
856     setrlimit(RLIMIT_STACK, &rls);
857     return;
858     }
859     EOF
860 mlosch 1.168 COMM="$CC $CFLAGS -c genmake_tc_1.c"
861     echo $COMM >> genmake_warnings
862     $COMM >> genmake_warnings 2>&1
863 edhill 1.130 RET_C=$?
864     cat <<EOF > genmake_tc_2.$FS
865     program hello
866     external setrlstk
867     call setrlstk()
868     end
869     EOF
870 edhill 1.135 echo >> genmake_warnings
871     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872     cat genmake_tc_2.$FS >> genmake_warnings
873     COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874     echo $COMM >> genmake_warnings
875     $COMM >> genmake_warnings 2>&1
876 edhill 1.130 RETVAL=$?
877     if test "x$RETVAL" = x0 ; then
878     HAVE_SETRLSTK=t
879     DEFINES="$DEFINES -DHAVE_SETRLSTK"
880     fi
881     rm -f genmake_tc*
882     }
883    
884    
885 edhill 1.108 check_HAVE_STAT() {
886     get_fortran_c_namemangling
887     cat <<EOF > genmake_tc_1.c
888     $FC_NAMEMANGLE
889     #include <stdio.h>
890     #include <stdlib.h>
891     #include <unistd.h>
892     #include <sys/stat.h>
893     #include <sys/types.h>
894     void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895     {
896     char name[512];
897     struct stat astat;
898    
899     name[0] = 'a'; name[1] = '\0';
900     if (! stat(name, &astat))
901     *nbyte = (int)(astat.st_size);
902     else
903     *nbyte = -1;
904     }
905     EOF
906 mlosch 1.168 COMM="$CC $CFLAGS -c genmake_tc_1.c"
907     echo $COMM >> genmake_warnings
908     $COMM >> genmake_tc.log 2>&1
909 edhill 1.108 RET_C=$?
910 edhill 1.118 cat <<EOF > genmake_tc_2.$FS
911 edhill 1.108 program hello
912     integer nbyte
913     call tfsize(nbyte)
914     print *," HELLO WORLD", nbyte
915 edhill 1.128 end
916 edhill 1.108 EOF
917 edhill 1.135 echo >> genmake_warnings
918     echo "running: check_HAVE_STAT()" >> genmake_warnings
919     cat genmake_tc_2.$FS >> genmake_warnings
920     COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921     echo $COMM >> genmake_warnings
922     $COMM >> genmake_tc.log 2>&1
923 edhill 1.108 RETVAL=$?
924     if test "x$RETVAL" = x0 ; then
925     HAVE_STAT=t
926     DEFINES="$DEFINES -DHAVE_STAT"
927     fi
928     rm -f genmake_tc*
929     }
930    
931    
932 edhill 1.60 check_netcdf_libs() {
933 edhill 1.113 if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934     return
935     fi
936 edhill 1.135 echo >> genmake_warnings
937     echo "running: check_netcdf_libs()" >> genmake_warnings
938 edhill 1.117 cat <<EOF > genmake_tnc.F
939 edhill 1.60 program fgennc
940     #include "netcdf.inc"
941 edhill 1.113 EOF
942     if test ! "x$MPI" = x ; then
943 edhill 1.117 echo '#include "mpif.h"' >> genmake_tnc.F
944 edhill 1.113 fi
945 edhill 1.117 cat <<EOF >> genmake_tnc.F
946 edhill 1.60 integer iret, ncid, xid
947     iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948     IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949     iret = nf_def_dim(ncid, 'X', 11, xid)
950     IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951     iret = nf_close(ncid)
952     IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953     end
954     EOF
955 edhill 1.135 echo "=== genmake_tnc.F ===" > genmake_tnc.log
956     cat genmake_tnc.F >> genmake_tnc.log
957     echo "=== genmake_tnc.F ===" >> genmake_tnc.log
958 edhill 1.111 RET_CPP=f
959 edhill 1.149 COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960 edhill 1.135 echo "$COMM" >> genmake_tnc.log
961 dfer 1.155 eval $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t
962 edhill 1.111 if test "x$RET_CPP" = xf ; then
963     echo " WARNING: CPP failed to pre-process the netcdf test." \
964 edhill 1.133 >> genmake_tnc.log
965 edhill 1.111 echo " Please check that \$INCLUDES is properly set." \
966 edhill 1.133 >> genmake_tnc.log
967 edhill 1.111 fi
968 edhill 1.135 echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
969 edhill 1.153 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970 edhill 1.117 $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
971 edhill 1.153 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972 edhill 1.60 RET_COMPILE=$?
973 edhill 1.135 cat genmake_tnc.log >> genmake_warnings
974 edhill 1.99
975     #EH3 Remove test program execution for machines that either disallow
976     #EH3 execution or cannot support it (eg. cross-compilers)
977     #EH3
978     #EH3 test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1
979     #EH3 RETVAL=$?
980     #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982     if test "x$RET_COMPILE" = x0 ; then
983 edhill 1.60 HAVE_NETCDF=t
984     else
985 edhill 1.66 # try again with "-lnetcdf" added to the libs
986 edhill 1.135 echo "try again with added '-lnetcdf'" > genmake_tnc.log
987 edhill 1.149 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988 edhill 1.133 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989 edhill 1.153 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990 edhill 1.149 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
991 edhill 1.117 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
992 edhill 1.153 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993 edhill 1.66 RET_COMPILE=$?
994 edhill 1.135 cat genmake_tnc.log >> genmake_warnings
995 edhill 1.99 if test "x$RET_COMPILE" = x0 ; then
996 edhill 1.66 LIBS="$LIBS -lnetcdf"
997     HAVE_NETCDF=t
998 ce107 1.160 else
999     # try again with "-lnetcdff" added to the libs
1000     echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001     echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002     echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003     echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004     cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1005     && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1006     && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007     RET_COMPILE=$?
1008     cat genmake_tnc.log >> genmake_warnings
1009     if test "x$RET_COMPILE" = x0 ; then
1010     LIBS="$LIBS -lnetcdff -lnetcdf"
1011     HAVE_NETCDF=t
1012     fi
1013 edhill 1.66 fi
1014 edhill 1.60 fi
1015     rm -f genmake_tnc*
1016     }
1017    
1018    
1019 adcroft 1.67
1020     ###############################################################################
1021     # Sequential part of script starts here
1022     ###############################################################################
1023    
1024 edhill 1.1 # Set defaults here
1025 edhill 1.5 COMMANDL="$0 $@"
1026    
1027 edhill 1.1 PLATFORM=
1028     LN=
1029     S64=
1030     KPP=
1031 edhill 1.114 #FC=
1032 edhill 1.93 #CC=gcc
1033 edhill 1.114 #CPP=
1034 edhill 1.1 LINK=
1035 edhill 1.31 DEFINES=
1036 edhill 1.1 PACKAGES=
1037     ENABLE=
1038     DISABLE=
1039 edhill 1.119 # MAKEFILE=
1040     # MAKEDEPEND=
1041 edhill 1.1 PDEPEND=
1042 edhill 1.11 DUMPSTATE=t
1043 edhill 1.1 PDEFAULT=
1044     OPTFILE=
1045 edhill 1.111 INCLUDES="-I. $INCLUDES"
1046 edhill 1.1 FFLAGS=
1047     FOPTIM=
1048 mlosch 1.165 FEXTRAFLAGS=
1049 jmc 1.181 USE_EXTENDED_SRC=
1050     EXTENDED_SRC_FLAG=
1051 edhill 1.1 CFLAGS=
1052     KFLAGS1=
1053     KFLAGS2=
1054 edhill 1.70 #LDADD=
1055 edhill 1.1 LIBS=
1056     KPPFILES=
1057     NOOPTFILES=
1058     NOOPTFLAGS=
1059 adcroft 1.67 MPI=
1060     MPIPATH=
1061 ce107 1.126 TS=
1062 ce107 1.139 PAPIS=
1063 ce107 1.147 PCLS=
1064 ce107 1.139 FOOLAD=
1065     PAPI=
1066 ce107 1.147 PCL=
1067 ce107 1.139 HPMT=
1068     GSL=
1069 ce107 1.160 DEVEL=
1070 edhill 1.131 HAVE_TEST_L=
1071 edhill 1.1
1072 edhill 1.124 # DEFINES checked by test compilation or command-line
1073 edhill 1.29 HAVE_SYSTEM=
1074     HAVE_FDATE=
1075     FC_NAMEMANGLE=
1076 edhill 1.39 HAVE_CLOC=
1077 edhill 1.151 # HAVE_SETRLSTK=
1078 edhill 1.108 HAVE_STAT=
1079 edhill 1.60 HAVE_NETCDF=
1080 cnh 1.81 HAVE_ETIME=
1081 edhill 1.124 IGNORE_TIME=
1082 edhill 1.29
1083 edhill 1.1 MODS=
1084     TOOLSDIR=
1085     SOURCEDIRS=
1086     INCLUDEDIRS=
1087 edhill 1.57 STANDARDDIRS="USE_THE_DEFAULT"
1088 edhill 1.1
1089 edhill 1.73 G2ARGS=
1090 edhill 1.71 BASH=
1091 edhill 1.1 PWD=`pwd`
1092 edhill 1.114 test "x$MAKE" = x && MAKE=make
1093     test "x$AWK" = x && AWK=awk
1094 edhill 1.141 EMBED_SRC=
1095 edhill 1.97 THISHOST=`hostname`
1096 edhill 1.1 THISCWD=`pwd`
1097     THISDATE=`date`
1098 edhill 1.97 THISUSER=`echo $USER`
1099     THISVER=
1100 edhill 1.1 MACHINE=`uname -a`
1101 edhill 1.7 EXECUTABLE=
1102     EXEHOOK=
1103     EXEDIR=
1104 edhill 1.12 PACKAGES_CONF=
1105     IEEE=
1106     if test "x$MITGCM_IEEE" != x ; then
1107     IEEE=$MITGCM_IEEE
1108     fi
1109 edhill 1.76 FS=
1110     FS90=
1111 edhill 1.1
1112 edhill 1.14 AUTODIFF_PKG_USED=f
1113     AD_OPTFILE=
1114 edhill 1.17 TAF=
1115     AD_TAF_FLAGS=
1116     FTL_TAF_FLAGS=
1117     SVD_TAF_FLAGS=
1118     TAF_EXTRA=
1119     TAMC=
1120     AD_TAMC_FLAGS=
1121     FTL_TAF_FLAGS=
1122     SVD_TAMC_FLAGS=
1123     TAMC_EXTRA=
1124    
1125 edhill 1.14
1126 edhill 1.5 # The following state can be set directly by command-line switches
1127 edhill 1.41 gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1128 ce107 1.160 gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1129 edhill 1.5
1130     # The following state is not directly set by command-line switches
1131 mlosch 1.165 gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1132 edhill 1.5 gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1133 edhill 1.97 gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1134 edhill 1.12 gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1135 cnh 1.81 gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1136 edhill 1.5
1137 edhill 1.14 # The following are all related to adjoint/tangent-linear stuff
1138 edhill 1.29 gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1139     gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1140     gm_s12="TAF_EXTRA TAMC_EXTRA"
1141 edhill 1.14
1142 edhill 1.29 gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1143     gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1144 edhill 1.5
1145 edhill 1.41 cat <<EOF
1146    
1147     GENMAKE :
1148    
1149     A program for GENerating MAKEfiles for the MITgcm project. For a
1150     quick list of options, use "genmake -h" or for more detail see:
1151    
1152     http://mitgcm.org/devel_HOWTO/
1153    
1154     EOF
1155 edhill 1.5
1156 edhill 1.2 echo "=== Processing options files and arguments ==="
1157 edhill 1.12 gm_local="genmake_local"
1158 edhill 1.71 printf " getting local config information: "
1159 edhill 1.88 if test -f $gm_local ; then
1160 edhill 1.1 echo "using $gm_local"
1161 edhill 1.34 . $gm_local
1162 edhill 1.2 # echo "DISABLE=$DISABLE"
1163     # echo "ENABLE=$ENABLE"
1164 edhill 1.1 else
1165     echo "none found"
1166     fi
1167    
1168 edhill 1.103 #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1169 edhill 1.2 #OPTIONS=
1170     #n=0
1171     #for i ; do
1172     # echo "$i $n"
1173     # setvar="OPTIONS[$n]='$i'"
1174     # # echo " $setvar"
1175     # eval "$setvar"
1176     # n=$(( $n + 1 ))
1177     #done
1178     #parse_options
1179     ac_prev=
1180 edhill 1.102 for ac_option in "$@" ; do
1181 edhill 1.2
1182 edhill 1.73 G2ARGS="$G2ARGS \"$ac_option\""
1183    
1184 edhill 1.2 # If the previous option needs an argument, assign it.
1185     if test -n "$ac_prev"; then
1186     eval "$ac_prev=\$ac_option"
1187     ac_prev=
1188     continue
1189     fi
1190    
1191     ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1192    
1193     case $ac_option in
1194    
1195     -help | --help | -h | --h)
1196     usage ;;
1197    
1198     -nooptfile | --nooptfile)
1199     OPTFILE="NONE" ;;
1200     -optfile | --optfile | -of | --of)
1201 edhill 1.4 ac_prev=OPTFILE ;;
1202 edhill 1.2 -optfile=* | --optfile=* | -of=* | --of=*)
1203     OPTFILE=$ac_optarg ;;
1204    
1205 edhill 1.50 -adoptfile | --adoptfile | -adof | --adof)
1206 edhill 1.14 ac_prev=AD_OPTFILE ;;
1207     -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1208     AD_OPTFILE=$ac_optarg ;;
1209    
1210 edhill 1.2 -pdepend | --pdepend)
1211 edhill 1.4 ac_prev=PDEPEND ;;
1212 edhill 1.2 -pdepend=* | --pdepend=*)
1213     PDEPEND=$ac_optarg ;;
1214    
1215     -pdefault | --pdefault)
1216 edhill 1.4 ac_prev=PDEFAULT ;;
1217 edhill 1.2 -pdefault=* | --pdefault=*)
1218     PDEFAULT=$ac_optarg ;;
1219    
1220 edhill 1.6 -make | --make | -m | --m)
1221     ac_prev=MAKE ;;
1222     -make=* | --make=* | -m=* | --m=*)
1223     MAKE=$ac_optarg ;;
1224 edhill 1.69
1225 edhill 1.71 -bash | --bash)
1226     ac_prev=BASH ;;
1227     -bash=* | --bash=*)
1228     BASH=$ac_optarg ;;
1229    
1230 edhill 1.69 -makedepend | --makedepend | -md | --md)
1231     ac_prev=MAKEDEPEND ;;
1232     -makedepend=* | --makedepend=* | -md=* | --md=*)
1233     MAKEDEPEND=$ac_optarg ;;
1234 edhill 1.6
1235     -makefile | --makefile | -ma | --ma)
1236 edhill 1.4 ac_prev=MAKEFILE ;;
1237 edhill 1.6 -makefile=* | --makefile=* | -ma=* | --ma=*)
1238 edhill 1.2 MAKEFILE=$ac_optarg ;;
1239    
1240 edhill 1.41 -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1241     echo "ERROR: The platform option has been removed. Please specify"
1242     echo " the build options using the \"optfile\" mechanism."
1243     echo
1244     usage
1245     ;;
1246 edhill 1.2
1247     -rootdir | --rootdir | -rd | --rd)
1248 edhill 1.4 ac_prev=ROOTDIR ;;
1249 edhill 1.2 -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1250     ROOTDIR=$ac_optarg ;;
1251    
1252     -mods | --mods | -mo | --mo)
1253 edhill 1.4 ac_prev=MODS ;;
1254 edhill 1.2 -mods=* | --mods=* | -mo=* | --mo=*)
1255     MODS=$ac_optarg ;;
1256    
1257     -disable | --disable)
1258 edhill 1.4 ac_prev=DISABLE ;;
1259 edhill 1.2 -disable=* | --disable=*)
1260     DISABLE=$ac_optarg ;;
1261    
1262     -enable | --enable)
1263 edhill 1.4 ac_prev=ENABLE ;;
1264 edhill 1.2 -enable=* | --enable=*)
1265     ENABLE=$ac_optarg ;;
1266    
1267 edhill 1.12 -standarddirs | --standarddirs)
1268     ac_prev=STANDARDDIRS ;;
1269     -standarddirs=* | --standarddirs=*)
1270     STANDARDDIRS=$ac_optarg ;;
1271    
1272 edhill 1.2 # -cpp | --cpp)
1273     # ac_prev=cpp ;;
1274     # -cpp=* | --cpp=*)
1275     # CPP=$ac_optarg ;;
1276 edhill 1.91
1277     -cc | --cc)
1278     ac_prev=CC ;;
1279     -cc=* | --cc=*)
1280     CC=$ac_optarg ;;
1281    
1282 edhill 1.2 -fortran | --fortran | -fc | --fc)
1283 edhill 1.4 ac_prev=FC ;;
1284 edhill 1.2 -fc=* | --fc=*)
1285     FC=$ac_optarg ;;
1286    
1287 edhill 1.76 -fs | --fs)
1288     ac_prev=FS ;;
1289     -fs=* | --fs=*)
1290     FS=$ac_optarg ;;
1291    
1292     -fs90 | --fs90)
1293     ac_prev=FS90 ;;
1294     -fs90=* | --fs90=*)
1295     FS90=$ac_optarg ;;
1296    
1297 edhill 1.2 -ieee | --ieee)
1298 edhill 1.12 IEEE=true ;;
1299 edhill 1.2 -noieee | --noieee)
1300 edhill 1.12 IEEE= ;;
1301 adcroft 1.67
1302 ce107 1.126 -ts | --ts)
1303     TS=true ;;
1304 ce107 1.139 -papis | --papis)
1305     PAPIS=true ;;
1306 ce107 1.147 -pcls | --pcls)
1307     PCLS=true ;;
1308 ce107 1.139 -foolad | --foolad)
1309     FOOLAD=true ;;
1310     -papi | --papi)
1311     PAPI=true ;;
1312 ce107 1.147 -pcl | --pcl)
1313     PCL=true ;;
1314 ce107 1.139 -hpmt | --hpmt)
1315     HPMT=true ;;
1316    
1317     -gsl | --gsl)
1318     GSL=true ;;
1319 ce107 1.126
1320 ce107 1.160 -devel | --devel)
1321     DEVEL=true ;;
1322    
1323 adcroft 1.67 -mpi | --mpi)
1324     MPI=true ;;
1325     -mpi=* | --mpi=*)
1326     MPIPATH=$ac_optarg
1327     MPI=true ;;
1328 edhill 1.2
1329 edhill 1.41 # -jam | --jam)
1330     # JAM=1 ;;
1331     # -nojam | --nojam)
1332     # JAM=0 ;;
1333 edhill 1.2
1334 edhill 1.5 -ds | --ds)
1335     DUMPSTATE=t ;;
1336    
1337 edhill 1.17 -taf_extra | --taf_extra)
1338     ac_prev=TAF_EXTRA ;;
1339     -taf_extra=* | --taf_extra=*)
1340     TAF_EXTRA=$ac_optarg ;;
1341    
1342     -tamc_extra | --tamc_extra)
1343     ac_prev=TAMC_EXTRA ;;
1344     -tamc_extra=* | --tamc_extra=*)
1345     TAMC_EXTRA=$ac_optarg ;;
1346 edhill 1.124
1347     -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1348     IGNORE_TIME="-DIGNORE_TIME" ;;
1349 edhill 1.17
1350 edhill 1.141 -es | --es | -embed-source | --embed-source)
1351     EMBED_SRC=t ;;
1352    
1353 edhill 1.2 -*)
1354     echo "Error: unrecognized option: "$ac_option
1355     usage
1356     ;;
1357    
1358     *)
1359     echo "Error: unrecognized argument: "$ac_option
1360     usage
1361     ;;
1362    
1363     esac
1364    
1365 edhill 1.1 done
1366    
1367 edhill 1.119
1368 edhill 1.12 if test -f ./.genmakerc ; then
1369     echo
1370     echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1371 jmc 1.161 echo " file. This file format is no longer supported. For directions on"
1372     echo " how to setup and use the new \"genmake2\" script, please see:"
1373 edhill 1.12 echo " http://mitgcm.org/devel_HOWTO/"
1374 jmc 1.161 echo " and send an email to MITgcm-support@mitgcm.org if you need help."
1375     echo "WARNING: ignore \"./.genmakerc\" and continue."
1376 edhill 1.12 echo
1377     fi
1378    
1379 edhill 1.97 # Find the MITgcm ${ROOTDIR}
1380 edhill 1.11 if test "x${ROOTDIR}" = x ; then
1381 edhill 1.112 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1382 edhill 1.154 if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1383 edhill 1.11 ROOTDIR=".."
1384     else
1385     for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1386     if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1387     ROOTDIR=$d
1388 edhill 1.71 printf "Warning: ROOTDIR was not specified but there appears to be"
1389 edhill 1.11 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1390     break
1391     fi
1392     done
1393     fi
1394     fi
1395     if test "x${ROOTDIR}" = x ; then
1396     echo "Error: Cannot determine ROOTDIR for MITgcm code."
1397     echo " Please specify a ROOTDIR using either an options "
1398     echo " file or a command-line option."
1399     exit 1
1400     fi
1401     if test ! -d ${ROOTDIR} ; then
1402     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
1403     exit 1
1404     fi
1405    
1406 edhill 1.97 # Find the MITgcm ${THISVER}
1407 jmc 1.179 version_file="${ROOTDIR}/doc/tag-index"
1408     if test -f $version_file ; then
1409     THISVER=`grep '^checkpoint' $version_file | head -1`
1410     #- remove ./BUILD_INFO.h file if older than version_file
1411     if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1412     echo " remove ./BUILD_INFO.h (older than ${version_file})"
1413     rm -f ./BUILD_INFO.h
1414     fi
1415 edhill 1.97 fi
1416    
1417 edhill 1.119 if test "x$MAKEFILE" = x ; then
1418     MAKEFILE="Makefile"
1419     fi
1420    
1421 edhill 1.1 echo " getting OPTFILE information: "
1422     if test "x${OPTFILE}" = x ; then
1423 edhill 1.11 if test "x$MITGCM_OF" = x ; then
1424     echo "Warning: no OPTFILE specified so we'll look for possible settings"
1425     printf "\n=== Searching for possible settings for OPTFILE ===\n"
1426     find_possible_configs
1427 edhill 1.1 else
1428 edhill 1.11 OPTFILE=$MITGCM_OF
1429     fi
1430     fi
1431     if test "x$OPTFILE" != xNONE ; then
1432     if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1433     echo " using OPTFILE=\"$OPTFILE\""
1434 edhill 1.34 . "$OPTFILE"
1435 edhill 1.11 RETVAL=$?
1436     if test "x$RETVAL" != x0 ; then
1437 edhill 1.71 printf "Error: failed to source OPTFILE \"$OPTFILE\""
1438 edhill 1.11 echo "--please check that variable syntax is bash-compatible"
1439 edhill 1.1 exit 1
1440     fi
1441 edhill 1.11 if test "x$DUMPSTATE" != xf ; then
1442 edhill 1.12 cp -f $OPTFILE "genmake_optfile"
1443 edhill 1.11 fi
1444     else
1445     echo "Error: can't read OPTFILE=\"$OPTFILE\""
1446     exit 1
1447 edhill 1.1 fi
1448     fi
1449 edhill 1.8
1450 edhill 1.14 echo " getting AD_OPTFILE information: "
1451     if test "x${AD_OPTFILE}" = x ; then
1452     if test "x$MITGCM_AD_OF" = x ; then
1453     AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1454     else
1455     AD_OPTFILE=$MITGCM_AD_OF
1456     fi
1457     fi
1458     if test "x${AD_OPTFILE}" != xNONE ; then
1459     if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1460     echo " using AD_OPTFILE=\"$AD_OPTFILE\""
1461 edhill 1.34 . "$AD_OPTFILE"
1462 edhill 1.14 RETVAL=$?
1463     if test "x$RETVAL" != x0 ; then
1464 edhill 1.71 printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1465 edhill 1.14 echo "--please check that variable syntax is bash-compatible"
1466     exit 1
1467     fi
1468     if test "x$DUMPSTATE" != xf ; then
1469     cp -f $AD_OPTFILE "genmake_ad_optfile"
1470     fi
1471     else
1472     echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1473     exit 1
1474     fi
1475     fi
1476    
1477 edhill 1.119 #====================================================================
1478     # Set default values if not set by the optfile
1479     #
1480 edhill 1.91 # Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined. If not,
1481 edhill 1.39 # either set defaults or complain and abort!
1482 edhill 1.71 if test ! "x$BASH" = x ; then
1483     # add a trailing space so that it works within the Makefile syntax (see below)
1484     BASH="$BASH "
1485     fi
1486 edhill 1.8 if test "x$FC" = x ; then
1487     cat <<EOF 1>&2
1488    
1489     Error: no Fortran compiler: please specify using one of the following:
1490     1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1491     2) the "-fc=XXX" command-line option
1492 edhill 1.12 3) the "./genmake_local" file
1493 edhill 1.8 EOF
1494     exit 1
1495     fi
1496 edhill 1.91 if test "x$CC" = x ; then
1497 edhill 1.93 CC=cc
1498     # cat <<EOF 1>&2
1499     # Error: no C compiler: please specify using one of the following:
1500     # 1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1501     # 2) the "-cc=XXX" command-line option
1502     # 3) the "./genmake_local" file
1503     # EOF
1504     # exit 1
1505 edhill 1.91 fi
1506 edhill 1.8 if test "x$LINK" = x ; then
1507     LINK=$FC
1508     fi
1509 edhill 1.39 if test "x$MAKE" = x ; then
1510     MAKE="make"
1511     fi
1512 edhill 1.63 if test "x$CPP" = x ; then
1513     CPP=cpp
1514     fi
1515     #EH3 === UGLY ===
1516 edhill 1.76 # The following is an ugly little hack to check for $CPP in /lib/ and
1517     # it should eventually be replaced with a more general function that
1518 edhill 1.63 # searches a combo of the user's path and a list of "usual suspects"
1519     # to find the correct location for binaries such as $CPP.
1520     for i in " " "/lib/" ; do
1521     echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1522     done
1523     #EH3 === UGLY ===
1524 edhill 1.13 echo "#define A a" | $CPP > test_cpp 2>&1
1525 edhill 1.11 RETVAL=$?
1526     if test "x$RETVAL" != x0 ; then
1527 edhill 1.8 cat <<EOF 1>&2
1528    
1529 edhill 1.11 Error: C pre-processor "$CPP" failed the test case: please specify using:
1530    
1531 edhill 1.8 1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1532 edhill 1.12 2) the "./genmake_local" file
1533 edhill 1.30 3) with the CPP environment variable
1534 edhill 1.11
1535 edhill 1.8 EOF
1536     exit 1
1537 edhill 1.11 else
1538     rm -f test_cpp
1539 edhill 1.8 fi
1540 edhill 1.84 look_for_makedepend
1541 edhill 1.35 if test "x$LN" = x ; then
1542     LN="ln -s"
1543     fi
1544     echo "test" > genmake_test_ln
1545     $LN genmake_test_ln genmake_tlink
1546     RETVAL=$?
1547     if test "x$RETVAL" != x0 ; then
1548     cat <<EOF 1>&2
1549 edhill 1.29
1550 edhill 1.35 Error: The command "ln -s" failed -- please specify a working soft-link
1551     command in the optfile.
1552    
1553     EOF
1554     exit 1
1555     fi
1556 edhill 1.131 test -L genmake_tlink > /dev/null 2>&1
1557     RETVAL=$?
1558     if test "x$RETVAL" = x0 ; then
1559     HAVE_TEST_L=t
1560     fi
1561 edhill 1.35 rm -f genmake_test_ln genmake_tlink
1562 edhill 1.77
1563     # Check for broken *.F/*.f handling and fix if possible
1564     check_for_broken_Ff
1565 edhill 1.29
1566 adcroft 1.67 if test ! "x$MPI" = x ; then
1567     echo " Turning on MPI cpp macros"
1568 adcroft 1.68 DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1569 adcroft 1.67 fi
1570 edhill 1.39
1571 ce107 1.126 if test ! "x$TS" = x ; then
1572     echo " Turning on timing per timestep"
1573 ce107 1.139 if test ! "x$FOOLAD" = x ; then
1574     DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1575     else
1576     DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1577     fi
1578 ce107 1.164 PACKAGES="$PACKAGES showflops"
1579 ce107 1.139 fi
1580     if test ! "x$PAPIS" = x ; then
1581     echo " Turning on PAPI flop summary per timestep"
1582     echo " Please make sure PAPIINC, PAPILIB are defined"
1583     if test ! "x$FOOLAD" = x ; then
1584     DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1585     else
1586     DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1587     fi
1588     INCLUDES="$INCLUDES $PAPIINC"
1589     LIBS="$LIBS $PAPILIB"
1590 ce107 1.164 PACKAGES="$PACKAGES showflops"
1591 ce107 1.139 fi
1592 ce107 1.147 if test ! "x$PCLS" = x ; then
1593     echo " Turning on PCL counter summary per timestep"
1594     echo " Please make sure PCLINC, PCLLIB are defined"
1595     if test ! "x$FOOLAD" = x ; then
1596     DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1597     else
1598     DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1599     fi
1600     INCLUDES="$INCLUDES $PCLINC"
1601     LIBS="$LIBS $PCLLIB"
1602 ce107 1.164 PACKAGES="$PACKAGES showflops"
1603 ce107 1.147 fi
1604 ce107 1.139 if test ! "x$PAPI" = x ; then
1605     if test ! "x$PAPIS" = x ; then
1606     echo " PAPI performance analysis and flop summary per timestep cannot co-exist!"
1607     echo " Sticking with PAPI flop summary per timestep!"
1608     else
1609     echo " Turning on performance analysis with PAPI"
1610     echo " Please make sure PAPIINC, PAPILIB are defined"
1611     DEFINES="$DEFINES -DUSE_PAPI"
1612     INCLUDES="$INCLUDES $PAPIINC"
1613     LIBS="$LIBS $PAPILIB"
1614     fi
1615     fi
1616 ce107 1.147 if test ! "x$PCL" = x ; then
1617     if test ! "x$PCLS" = x ; then
1618     echo " PCL performance analysis and flop summary per timestep cannot co-exist!"
1619     echo " Sticking with PCL flop summary per timestep!"
1620     else
1621     echo " Turning on performance analysis with PCL"
1622     echo " Please make sure PCLINC, PCLLIB are defined"
1623     DEFINES="$DEFINES -DUSE_PCL"
1624     INCLUDES="$INCLUDES $PCLINC"
1625     LIBS="$LIBS $PCLLIB"
1626     fi
1627     fi
1628 ce107 1.139 if test ! "x$HPMT" = x ; then
1629     if test ! "x$PAPI" = x ; then
1630     echo " PAPI and the HPM Toolkit cannot co-exist!"
1631     echo " Sticking with PAPI!"
1632 ce107 1.147 else if test ! "x$PCL" = x ; then
1633     echo " PCL and the HPM Toolkit cannot co-exist!"
1634     echo " Sticking with PCL!"
1635 ce107 1.139 else
1636     echo " Turning on performance analysis with the HPM Toolkit"
1637     echo " Please make sure HPMTINC, HPMTLIB are defined"
1638     DEFINES="$DEFINES -DUSE_LIBHPM"
1639     INCLUDES="$INCLUDES $HPMTINC"
1640     LIBS="$LIBS $HPMTLIB"
1641     fi
1642 ce107 1.148 fi
1643 ce107 1.139 fi
1644     if test ! "x$GSL" = x ; then
1645     echo " Turning on use of GSL to control floating point calculations"
1646     echo " Please make sure GSLINC, GSLLIB are defined"
1647     DEFINES="$DEFINES -DUSE_GSL_IEEE"
1648     INCLUDES="$INCLUDES $GSLINC"
1649     LIBS="$LIBS $GSLLIB"
1650 ce107 1.126 fi
1651 jmc 1.181 #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1652     if test ! "x$USE_EXTENDED_SRC" = x ; then
1653     FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1654     F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1655     fi
1656 ce107 1.126
1657 edhill 1.29 printf "\n=== Checking system libraries ===\n"
1658 edhill 1.71 printf " Do we have the system() command using $FC... "
1659 edhill 1.118 cat > genmake_tcomp.$FS <<EOF
1660 edhill 1.29 program hello
1661     call system('echo hi')
1662     end
1663     EOF
1664 edhill 1.134 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665 edhill 1.29 RETVAL=$?
1666     if test "x$RETVAL" = x0 ; then
1667     HAVE_SYSTEM=t
1668     DEFINES="$DEFINES -DHAVE_SYSTEM"
1669     echo "yes"
1670     else
1671     HAVE_SYSTEM=
1672     echo "no"
1673     fi
1674     rm -f genmake_tcomp*
1675    
1676 edhill 1.71 printf " Do we have the fdate() command using $FC... "
1677 edhill 1.118 cat > genmake_tcomp.$FS <<EOF
1678 edhill 1.29 program hello
1679 edhill 1.129 CHARACTER*(128) string
1680 edhill 1.29 string = ' '
1681     call fdate( string )
1682     print *, string
1683     end
1684     EOF
1685 edhill 1.134 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1686 edhill 1.29 RETVAL=$?
1687     if test "x$RETVAL" = x0 ; then
1688     HAVE_FDATE=t
1689     DEFINES="$DEFINES -DHAVE_FDATE"
1690     echo "yes"
1691     else
1692     HAVE_FDATE=
1693     echo "no"
1694     fi
1695     rm -f genmake_tcomp*
1696    
1697 cnh 1.81 printf " Do we have the etime() command using $FC... "
1698 edhill 1.118 cat > genmake_tcomp.$FS <<EOF
1699 cnh 1.81 program hello
1700 cnh 1.82 REAL*4 ACTUAL, TARRAY(2)
1701     EXTERNAL ETIME
1702     REAL*4 ETIME
1703     actual = etime( tarray )
1704 cnh 1.81 print *, tarray
1705     end
1706     EOF
1707 edhill 1.134 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708 cnh 1.81 RETVAL=$?
1709     if test "x$RETVAL" = x0 ; then
1710     HAVE_ETIME=t
1711     DEFINES="$DEFINES -DHAVE_ETIME"
1712     echo "yes"
1713     else
1714     HAVE_ETIME=
1715     echo "no"
1716     fi
1717     rm -f genmake_tcomp*
1718    
1719 edhill 1.71 printf " Can we call simple C routines (here, \"cloc()\") using $FC... "
1720 edhill 1.39 check_HAVE_CLOC
1721     if test "x$HAVE_CLOC" != x ; then
1722     echo "yes"
1723     else
1724     echo "no"
1725 edhill 1.141 if test "x$EMBED_SRC" = xt ; then
1726     echo " WARNING: you requested file embedding but it has"
1727     echo " been disabled since C code cannot be called"
1728     EMBED_SRC=
1729     fi
1730 edhill 1.29 fi
1731 edhill 1.39 rm -f genmake_t*
1732 edhill 1.29
1733 edhill 1.130 printf " Can we unlimit the stack size using $FC... "
1734     check_HAVE_SETRLSTK
1735 edhill 1.151 if test "x$HAVE_SETRLSTK" = xt ; then
1736 edhill 1.130 echo "yes"
1737     else
1738     echo "no"
1739     fi
1740     rm -f genmake_t*
1741    
1742 edhill 1.137 printf " Can we register a signal handler using $FC... "
1743     check_HAVE_SIGREG
1744 edhill 1.150 if test "x$HAVE_SIGREG" = xt ; then
1745 edhill 1.137 echo "yes"
1746     else
1747     echo "no"
1748     fi
1749     rm -f genmake_t*
1750    
1751 edhill 1.108 printf " Can we use stat() through C calls... "
1752     check_HAVE_STAT
1753     if test "x$HAVE_STAT" != x ; then
1754     echo "yes"
1755     else
1756     echo "no"
1757     fi
1758     rm -f genmake_t*
1759    
1760 edhill 1.71 printf " Can we create NetCDF-enabled binaries... "
1761 edhill 1.60 check_netcdf_libs
1762     if test "x$HAVE_NETCDF" != x ; then
1763     echo "yes"
1764     else
1765     echo "no"
1766     fi
1767 edhill 1.124 DEFINES="$DEFINES $IGNORE_TIME"
1768 edhill 1.8
1769 edhill 1.141 if test "x$EMBED_SRC" = xt ; then
1770     build_embed_encode
1771     fi
1772     if test "x$EMBED_SRC" = xt ; then
1773     ENABLE="$ENABLE embed_files"
1774     fi
1775    
1776    
1777 edhill 1.2 printf "\n=== Setting defaults ===\n"
1778 edhill 1.71 printf " Adding MODS directories: "
1779 edhill 1.1 for d in $MODS ; do
1780     if test ! -d $d ; then
1781 edhill 1.2 echo
1782     echo "Error: MODS directory \"$d\" not found!"
1783 edhill 1.1 exit 1
1784     else
1785 edhill 1.71 printf " $d"
1786 edhill 1.1 SOURCEDIRS="$SOURCEDIRS $d"
1787     INCLUDEDIRS="$INCLUDEDIRS $d"
1788     fi
1789     done
1790     echo
1791    
1792     if test "x${PLATFORM}" = x ; then
1793     PLATFORM=$p_PLATFORM
1794     fi
1795    
1796     if test "x${EXEDIR}" = x ; then
1797 edhill 1.112 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1798 edhill 1.87 if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1799 edhill 1.1 EXEDIR=../exe
1800     else
1801     EXEDIR=.
1802     fi
1803     fi
1804     if test ! -d ${EXEDIR} ; then
1805     echo "Error: the specified EXEDIR (\"$EXEDIR\") does not exist!"
1806     exit 1
1807     fi
1808    
1809     if test "x${TOOLSDIR}" = x ; then
1810     TOOLSDIR="$ROOTDIR/tools"
1811     fi
1812     if test ! -d ${TOOLSDIR} ; then
1813 cnh 1.65 echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1814 edhill 1.1 exit 1
1815     fi
1816 edhill 1.11 if test "x$S64" = x ; then
1817 edhill 1.104 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1818     RETVAL=$?
1819     if test "x${RETVAL}" = x0 ; then
1820     S64='$(TOOLSDIR)/set64bitConst.sh'
1821     else
1822     echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1823     RETVAL=$?
1824     if test "x${RETVAL}" = x0 ; then
1825     S64='$(TOOLSDIR)/set64bitConst.csh'
1826     else
1827     cat <<EOF
1828    
1829     ERROR: neither of the two default scripts:
1830    
1831     ${TOOLSDIR}/set64bitConst.sh
1832     ${TOOLSDIR}/set64bitConst.csh
1833    
1834     are working so please check paths or specify (with \$S64) a
1835     working version of this script.
1836    
1837     EOF
1838     exit 1
1839     fi
1840     fi
1841 edhill 1.11 fi
1842 adcroft 1.44 THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1843 edhill 1.1
1844     EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1845    
1846     # We have a special set of source files in eesupp/src which are
1847     # generated from some template source files. We'll make them first so
1848     # they appear as regular source code
1849     if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1850     echo " Making source files in eesupp from templates"
1851 edhill 1.36 ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1852 edhill 1.1 RETVAL=$?
1853 edhill 1.2 if test "x${RETVAL}" = x0 ; then
1854 edhill 1.1 rm -f make_eesupp.errors
1855     else
1856     echo "Error: problem encountered while building source files in eesupp:"
1857 edhill 1.62 cat make_eesupp.errors 1>&2
1858 edhill 1.1 exit 1
1859 afe 1.58 fi
1860     fi
1861    
1862 edhill 1.154 #same for pkg/exch2 and pkg/regrid
1863     for pdir in exch2 regrid ; do
1864     if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1865     echo " Making source files in pkg/${pdir} from templates"
1866     ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1867     RETVAL=$?
1868     if test "x${RETVAL}" = x0 ; then
1869     rm -f make_${pdir}.errors
1870     else
1871     echo "Error: problem encountered while building source files in pkg/${pdir}:"
1872     cat make_${pdir}.errors 1>&2
1873     exit 1
1874     fi
1875 edhill 1.1 fi
1876 edhill 1.154 done
1877 edhill 1.1
1878 edhill 1.2 printf "\n=== Determining package settings ===\n"
1879 edhill 1.1 if test "x${PDEPEND}" = x ; then
1880     tmp=$ROOTDIR"/pkg/pkg_depend"
1881     if test -r $tmp ; then
1882     PDEPEND=$tmp
1883     else
1884     echo "Warning: No package dependency information was specified."
1885     echo " Please check that ROOTDIR/pkg/pkg_depend exists."
1886     fi
1887     else
1888     if test ! -r ${PDEPEND} ; then
1889     echo "Error: can't read package dependency info from PDEPEND=\"$PDEPEND\""
1890     exit 1
1891     fi
1892     fi
1893     echo " getting package dependency info from $PDEPEND"
1894     # Strip the comments and then convert the dependency file into
1895     # two arrays: PNAME, DNAME
1896     cat $PDEPEND | sed -e 's/#.*$//g' \
1897 edhill 1.15 | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1898 edhill 1.1 > ./.pd_tmp
1899     RETVAL=$?
1900     if test ! "x${RETVAL}" = x0 ; then
1901     echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1902     exit 1
1903     fi
1904 edhill 1.34 . ./.pd_tmp
1905 edhill 1.1 rm -f ./.pd_tmp
1906    
1907 edhill 1.12 # Search for default packages. Note that a "$ROOTDIR/pkg/pkg_groups"
1908     # file should eventually be added so that, for convenience, one can
1909     # specify groups of packages using names like "ocean" and "atmosphere".
1910 edhill 1.41 echo " checking default package list: "
1911 edhill 1.1 if test "x${PDEFAULT}" = x ; then
1912 edhill 1.12 for i in "." $MODS ; do
1913     if test -r $i"/packages.conf" ; then
1914     PDEFAULT=$i"/packages.conf"
1915     break
1916     fi
1917     done
1918     fi
1919     if test "x${PDEFAULT}" = x ; then
1920 edhill 1.1 PDEFAULT="$ROOTDIR/pkg/pkg_default"
1921     fi
1922     if test "x${PDEFAULT}" = xNONE ; then
1923 edhill 1.41 echo " default packages file disabled"
1924 edhill 1.1 else
1925     if test ! -r $PDEFAULT ; then
1926     echo "Warning: can't read default packages from PDEFAULT=\"$PDEFAULT\""
1927     else
1928 edhill 1.41 echo " using PDEFAULT=\"$PDEFAULT\""
1929 edhill 1.1 # Strip the comments and add all the names
1930 edhill 1.15 def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1931 edhill 1.1 RETVAL=$?
1932     if test "x${RETVAL}" != x0 ; then
1933 edhill 1.71 printf "Error: can't parse default package list "
1934 edhill 1.1 echo "-- please check PDEFAULT=\"$PDEFAULT\""
1935     exit 1
1936     fi
1937     for i in $def ; do
1938     PACKAGES="$PACKAGES $i"
1939     done
1940 edhill 1.12 echo " before group expansion packages are: $PACKAGES"
1941 edhill 1.87 RET=1
1942     while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1943 edhill 1.12 echo " after group expansion packages are: $PACKAGES"
1944 edhill 1.1 fi
1945     fi
1946    
1947     echo " applying DISABLE settings"
1948 adcroft 1.74 for i in $PACKAGES ; do
1949     echo $i >> ./.tmp_pack
1950     done
1951     for i in `grep "-" ./.tmp_pack` ; do
1952     j=`echo $i | sed 's/[-]//'`
1953     DISABLE="$DISABLE $j"
1954     done
1955 edhill 1.1 pack=
1956     for p in $PACKAGES ; do
1957     addit="t"
1958     for d in $DISABLE ; do
1959     if test "x$p" = "x$d" ; then
1960     addit="f"
1961     fi
1962     done
1963     if test "x$addit" = xt ; then
1964     pack="$pack $p"
1965     fi
1966     done
1967     PACKAGES="$pack"
1968     echo " applying ENABLE settings"
1969 edhill 1.12 echo "" > ./.tmp_pack
1970 edhill 1.1 PACKAGES="$PACKAGES $ENABLE"
1971 adcroft 1.74 # Test if each explicitly referenced package exists
1972 edhill 1.1 for i in $PACKAGES ; do
1973 adcroft 1.74 j=`echo $i | sed 's/[-+]//'`
1974     if test ! -d "$ROOTDIR/pkg/$j" ; then
1975 edhill 1.1 echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1976 adcroft 1.74 exit 1
1977 edhill 1.1 fi
1978     echo $i >> ./.tmp_pack
1979     done
1980     PACKAGES=
1981 adcroft 1.74 for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1982 edhill 1.1 PACKAGES="$PACKAGES $i"
1983     done
1984 adcroft 1.74 rm -f ./.tmp_pack
1985 edhill 1.1 echo " packages are: $PACKAGES"
1986    
1987 jmc 1.161 # Check for package MNC: if NetCDF is available, then build the MNC
1988     # template files ; otherwise, delete mnc from the list of packages.
1989 edhill 1.100 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1990     RETVAL=$?
1991     if test "x$RETVAL" = x0 ; then
1992     if test "x$HAVE_NETCDF" != xt ; then
1993     cat <<EOF
1994    
1995     *********************************************************************
1996     WARNING: the "mnc" package was enabled but tests failed to compile
1997     NetCDF applications. Please check that:
1998    
1999     1) NetCDF is correctly installed for this compiler and
2000     2) the LIBS variable (within the "optfile") specifies the correct
2001     NetCDF library to link against.
2002    
2003     Due to this failure, the "mnc" package is now DISABLED.
2004     *********************************************************************
2005    
2006     EOF
2007     PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2008     DISABLE="$DISABLE mnc"
2009     else
2010 edhill 1.110 ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2011 edhill 1.100 RETVAL=$?
2012     if test "x${RETVAL}" = x0 ; then
2013     rm -f make_mnc.errors
2014     else
2015     echo "Error: problem encountered while building source files in pkg/mnc:"
2016     cat make_mnc.errors 1>&2
2017     exit 1
2018     fi
2019     fi
2020     fi
2021    
2022 jmc 1.161 # Check for package PROFILES: if NetCDF is not available,
2023     # then delete profiles from the list of available packages.
2024     echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2025     RETVAL=$?
2026     if test "x$RETVAL" = x0 ; then
2027     if test "x$HAVE_NETCDF" != xt ; then
2028     cat <<EOF
2029    
2030     *********************************************************************
2031     WARNING: the "profiles" package was enabled but tests failed to
2032     compile NetCDF applications. Please check that:
2033    
2034     1) NetCDF is correctly installed for this compiler and
2035     2) the LIBS variable (within the "optfile") specifies the correct
2036     NetCDF library to link against.
2037    
2038     Due to this failure, the "profiles" package is now DISABLED.
2039     *********************************************************************
2040    
2041     EOF
2042     PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2043     DISABLE="$DISABLE profiles"
2044     fi
2045     fi
2046    
2047 edhill 1.1 echo " applying package dependency rules"
2048     ck=
2049     while test "x$ck" != xtt ; do
2050     i=0
2051 edhill 1.2 # rtot=${#PNAME[@]}
2052     rtot=$nname
2053 jmc 1.162 while test $i -le $rtot ; do
2054 edhill 1.1
2055     # Is $pname in the current $PACKAGES list?
2056 edhill 1.2 # pname=${PNAME[$i]}
2057     tmp="pname=\"\$PNAME_$i\""
2058     eval $tmp
2059 edhill 1.1 pin="f"
2060     for p in $PACKAGES ; do
2061     if test "x$p" = "x$pname" ; then
2062     pin="t"
2063     fi
2064     done
2065    
2066     # Is the DNAME entry a (+) or (-) rule ?
2067 edhill 1.2 tmp="dname=\"\$DNAME_$i\""
2068     eval $tmp
2069 edhill 1.1 plus="-"
2070 edhill 1.2 echo $dname | grep '^+' > /dev/null 2>&1
2071 edhill 1.1 RETVAL=$?
2072     if test "x$RETVAL" = x0 ; then
2073     plus="+"
2074     fi
2075    
2076     # Is $dname in the current $PACKAGES list?
2077 edhill 1.2 dname=`echo $dname | sed -e 's/^[+-]//'`
2078 edhill 1.1 din="f"
2079     for p in $PACKAGES ; do
2080     if test "x$p" = "x$dname" ; then
2081     din="t"
2082     fi
2083     done
2084    
2085     # Do we need to add $dname according to the dependency rules?
2086     if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2087 jmc 1.162 #echo " " $pname ": need to add :" $dname
2088 edhill 1.1 in_dis="f"
2089     for dis in $DISABLE ; do
2090     if test "x$dis" = "x$dname" ; then
2091     in_dis="t"
2092     fi
2093     done
2094     if test "x$in_dis" = xt ; then
2095     echo "Error: can't satisfy package dependencies:"
2096     echo " \"$dname\" is required by the dependency rules"
2097     echo " but is disallowed by the DISABLE settings"
2098     exit 1
2099     else
2100     PACKAGES="$PACKAGES $dname"
2101     ck=
2102     fi
2103     fi
2104    
2105     # Do we need to get rid of $dname according to the dependency rules?
2106     if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2107     echo "Error: can't satisfy package dependencies:"
2108     echo " \"$pname\" was requested but is disallowed by"
2109     echo " the dependency rules for \"$dname\""
2110     exit 1
2111     fi
2112 edhill 1.87 i=`echo "$i + 1" | bc -l`
2113     #i=$(( $i + 1 ))
2114 edhill 1.1 done
2115     ck=$ck"t"
2116     done
2117     echo " packages are: $PACKAGES"
2118     for i in $PACKAGES ; do
2119     adr="$ROOTDIR/pkg/$i"
2120     if test -d $adr ; then
2121     SOURCEDIRS="$SOURCEDIRS $adr"
2122     INCLUDEDIRS="$INCLUDEDIRS $adr"
2123 edhill 1.14 if test "x$i" = xautodiff ; then
2124     AUTODIFF_PKG_USED=t
2125     fi
2126 edhill 1.1 else
2127     echo "Error: the directory \"$adr\" for package $i doesn't exist"
2128     exit 1
2129     fi
2130     done
2131    
2132 edhill 1.12 # Create a list of #define and #undef to enable/disable packages
2133     PACKAGES_DOT_H=PACKAGES_CONFIG.h
2134 edhill 1.1 # The following UGLY HACK sets multiple "#undef"s and it needs to go
2135     # away. On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2136     # file would eventually be split up so that all package-related #define
2137     # statements could be separated and handled only by genmake.
2138     names=`ls -1 "$ROOTDIR/pkg"`
2139     all_pack=
2140 adcroft 1.44 DISABLED_PACKAGES=
2141 edhill 1.1 for n in $names ; do
2142     if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2143     has_pack="f"
2144     for pack in $PACKAGES ; do
2145     if test "x$pack" = "x$n" ; then
2146     has_pack="t"
2147     break
2148     fi
2149     done
2150     if test "x$has_pack" = xf ; then
2151 edhill 1.116 undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2152 adcroft 1.44 DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2153 edhill 1.1 fi
2154     fi
2155     done
2156 adcroft 1.44 ENABLED_PACKAGES=
2157 edhill 1.1 for i in $PACKAGES ; do
2158 edhill 1.116 def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2159 adcroft 1.44 ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2160 edhill 1.12 #eh3 DEFINES="$DEFINES -D$def"
2161 edhill 1.1
2162     #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2163     case $i in
2164     aim_v23)
2165 adcroft 1.46 ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2166 jmc 1.55 echo "Warning: ALLOW_AIM is set to enable aim_v23."
2167 edhill 1.1 ;;
2168     esac
2169     #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2170    
2171     done
2172    
2173     echo " Adding STANDARDDIRS"
2174     BUILDDIR=${BUILDDIR:-.}
2175 edhill 1.57 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2176 edhill 1.12 STANDARDDIRS="eesupp model"
2177     fi
2178 edhill 1.57 if test "x$STANDARDDIRS" != x ; then
2179     for d in $STANDARDDIRS ; do
2180     adr="$ROOTDIR/$d/src"
2181     if test ! -d $adr ; then
2182     echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2183     echo " is correct and that you correctly specified the STANDARDDIRS option"
2184     exit 1
2185     else
2186     SOURCEDIRS="$SOURCEDIRS $adr"
2187     fi
2188     adr="$ROOTDIR/$d/inc"
2189     if test ! -d $adr ; then
2190     echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2191     echo " is correct and that you correctly specified the STANDARDDIRS option"
2192     exit 1
2193     else
2194     INCLUDEDIRS="$INCLUDEDIRS $adr"
2195     fi
2196     done
2197     fi
2198 edhill 1.1
2199 adcroft 1.52 echo " Searching for *OPTIONS.h files in order to warn about the presence"
2200     echo " of \"#define \"-type statements that are no longer allowed:"
2201 edhill 1.12 CPP_OPTIONS=
2202 adcroft 1.52 CPP_EEOPTIONS=
2203 edhill 1.12 spaths=". $INCLUDEDIRS"
2204 adcroft 1.52 names=`ls -1 "$ROOTDIR/pkg"`
2205 edhill 1.12 for i in $spaths ; do
2206     try="$i/CPP_OPTIONS.h"
2207 edhill 1.54 if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2208 edhill 1.12 echo " found CPP_OPTIONS=\"$try\""
2209     CPP_OPTIONS="$try"
2210 adcroft 1.52 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2211     for n in $names ; do
2212     test_for_package_in_cpp_options $CPP_OPTIONS $n
2213     done
2214     fi
2215     try="$i/CPP_EEOPTIONS.h"
2216 edhill 1.54 if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2217 adcroft 1.52 echo " found CPP_EEOPTIONS=\"$try\""
2218     # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2219     #**** not yet enabled ****
2220     # test_for_mpi_in_cpp_eeoptions $try
2221     #**** not yet enabled ****
2222     CPP_EEOPTIONS="$try"
2223 edhill 1.12 fi
2224     done
2225     if test "x$CPP_OPTIONS" = x ; then
2226     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2227     exit 1
2228     fi
2229 edhill 1.1
2230 edhill 1.14 # Here, we build the list of files to be "run through" the adjoint
2231     # compiler.
2232 jmc 1.176 if test -f ./adSrcFiles.tmp ; then
2233     rm -f ./adSrcFiles.tmp
2234 edhill 1.14 fi
2235     echo " Creating the list of files for the adjoint compiler."
2236     for i in $SOURCEDIRS ; do
2237     list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2238     for j in $list_files ; do
2239 jmc 1.176 cat $i/$j >> adSrcFiles.tmp
2240 edhill 1.14 done
2241     done
2242 edhill 1.121 if test ! "x"$FS = "x.f" ; then
2243 jmc 1.176 cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2244     mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2245 edhill 1.121 fi
2246 edhill 1.14
2247 edhill 1.2 echo
2248     echo "=== Creating the Makefile ==="
2249 edhill 1.1 echo " setting INCLUDES"
2250     for i in $INCLUDEDIRS ; do
2251 edhill 1.87 if test ! -d $i ; then
2252 edhill 1.1 echo "Warning: can't find INCLUDEDIRS=\"$i\""
2253     fi
2254     done
2255    
2256 ce107 1.139 if test ! "x$DIVA" = x ; then
2257 ce107 1.140 echo " Creating the pseudo-MPI include directory"
2258 ce107 1.139 INCLUDES="-I./mpi_headers $INCLUDES"
2259     rm -rf ./mpi_headers
2260     mkdir -p ./mpi_headers
2261    
2262     if test "x$MPIINCLUDEDIR" = x ; then
2263     if test "x$MPIHOME" = x ; then
2264     MPIHOME='/usr'
2265     fi
2266     MPIINCLUDEDIR='$MPIHOME/include'
2267     fi
2268    
2269     if test -r $MPIINCLUDEDIR/mpif.h ; then
2270     for i in $MPI_HEADER_FILES; do
2271     cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2272     done
2273    
2274     perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2275     else
2276     echo " We cannot create a copy of mpif.h!"
2277 heimbach 1.156 # exit -1
2278 ce107 1.139 fi
2279     fi
2280    
2281 edhill 1.1 echo " Determining the list of source and include files"
2282     rm -rf .links.tmp
2283     mkdir .links.tmp
2284 edhill 1.142 touch .links.tmp/foo
2285     if test ! -r ".links.tmp/foo" ; then
2286     echo
2287     echo "ERROR : something is wrong with your directory permissions or"
2288     echo " your user file-creation mask (\"umask\") since creating a"
2289     echo " sub-dir, touch-ing a file within it, and then reading it is"
2290     echo " not working. Please try setting your umask to something"
2291     echo " sane such as:"
2292     echo
2293     echo " umask 0002"
2294     echo
2295     echo " and please verify that you have the proper permissions for"
2296     echo " creating sub-directories and then reading files created"
2297     echo " within them."
2298     echo
2299     exit 1
2300     fi
2301     rm -f .links.tmp/foo
2302 jmc 1.176
2303     if test "x$OPENAD" != x ; then
2304     OAD_DONT_COMPILE="/dev/null"
2305     OAD_DONT_TRANSFORM="/dev/null"
2306     OAD_KEEP_ORIGINAL="/dev/null"
2307     OAD_CB2M_FILES="/dev/null"
2308     echo " looking for dontCompile file: "
2309     for i in "." $MODS ; do
2310     if test -r $i"/dontCompile" ; then
2311     OAD_DONT_COMPILE=$i"/dontCompile"
2312     echo " found $OAD_DONT_COMPILE"
2313     break
2314     fi
2315     done
2316     echo " looking for dontTransform file: "
2317     for i in "." $MODS ; do
2318     if test -r $i"/dontTransform" ; then
2319     OAD_DONT_TRANSFORM=$i"/dontTransform"
2320     echo " found $OAD_DONT_TRANSFORM"
2321     break
2322     fi
2323     done
2324     echo " looking for keepOriginal file: "
2325     for i in "." $MODS ; do
2326     if test -r $i"/keepOriginal" ; then
2327     OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2328     echo " found $OAD_KEEP_ORIGINAL"
2329     break
2330     fi
2331     done
2332     echo " looking for cb2mFiles: "
2333     for i in "." $MODS ; do
2334     if test -r $i"/cb2mFiles" ; then
2335     OAD_CB2M_FILES=$i"/cb2mFiles"
2336     echo " found $OAD_CB2M_FILES"
2337     break
2338     fi
2339     done
2340     echo " OpenAD exceptions: "
2341     fi
2342    
2343 edhill 1.1 echo "# This section creates symbolic links" > srclinks.tmp
2344     echo "" >> srclinks.tmp
2345 jmc 1.176 printf 'F77_SRC_FILES = ' > F77srclist.tmp
2346     printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2347     printf 'C_SRC_FILES = ' > csrclist.tmp
2348     printf 'F90_SRC_FILES = ' > F90srclist.tmp
2349     printf 'H_SRC_FILES = ' > hsrclist.tmp
2350     printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2351 adcroft 1.9 alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2352 edhill 1.1 for d in $alldirs ; do
2353     deplist=
2354 edhill 1.14 sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2355 cnh 1.3 sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2356 jmc 1.176 if test "x$OPENAD" != x ; then
2357     sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2358     fi
2359 edhill 1.1 for sf in $sfiles ; do
2360     if test ! -r ".links.tmp/$sf" ; then
2361     if test -f "$d/$sf" ; then
2362 edhill 1.131 ignore_f=f
2363 adcroft 1.44 case $d/$sf in
2364     ./$PACKAGES_DOT_H)
2365 edhill 1.141 ignore_f=t
2366 adcroft 1.44 ;;
2367     ./AD_CONFIG.h)
2368 edhill 1.141 ignore_f=t
2369 adcroft 1.44 ;;
2370     ./FC_NAMEMANGLE.h)
2371 edhill 1.141 ignore_f=t
2372 adcroft 1.44 ;;
2373 edhill 1.98 ./BUILD_INFO.h)
2374 edhill 1.141 ignore_f=t
2375     ;;
2376     ./EMBEDDED_FILES.h)
2377     ignore_f=t
2378 edhill 1.98 ;;
2379 adcroft 1.44 *)
2380 edhill 1.131 # For the local directory *ONLY*,
2381     # ignore all soft-links
2382     if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2383     ignore_f=t
2384     else
2385     touch .links.tmp/$sf
2386     deplist="$deplist $sf"
2387     fi
2388 adcroft 1.44 ;;
2389     esac
2390 edhill 1.131 if test "x$ignore_f" = xf ; then
2391     extn=`echo $sf | $AWK -F. '{print $NF}'`
2392     case $extn in
2393 jmc 1.176 F)
2394     echo " \\" >> F77srclist.tmp
2395     printf " $sf" >> F77srclist.tmp
2396     if test "x$OPENAD" != x ; then
2397     basename=${sf%%.F}
2398     isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp`
2399     if test -z "$isAD" ; then
2400     toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}`
2401     if test -z "$toBeIgnored" ; then
2402     echo " \\" >> nonADF77srclist.tmp
2403     printf " $sf" >> nonADF77srclist.tmp
2404     else
2405     echo " not to be compiled : $sf"
2406     fi
2407     else # file is initially listed as an AD file we want to exclude it
2408     # or we want to retain the untransformed version
2409     notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}`
2410     untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}`
2411     if test -n "$notToBeTransformed"; then
2412     echo " not to be transformed: $sf"
2413     fi
2414     if test -n "$untransformedVersionToBeKept" ; then
2415     echo " original to be kept : $sf"
2416     fi
2417     if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2418     echo " \\" >> nonADF77srclist.tmp
2419     printf " $sf" >> nonADF77srclist.tmp
2420     fi
2421     fi
2422     fi
2423     ;;
2424     F90)
2425     echo " \\" >> F90srclist.tmp
2426     printf " $sf" >> F90srclist.tmp
2427     ;;
2428     c)
2429     echo " \\" >> csrclist.tmp
2430     printf " $sf" >> csrclist.tmp
2431     ;;
2432     h)
2433     echo " \\" >> hsrclist.tmp
2434     printf " $sf" >> hsrclist.tmp
2435     ;;
2436     flow)
2437     echo " \\" >> ad_flow_files.tmp
2438     printf " $sf" >> ad_flow_files.tmp
2439     ;;
2440     esac
2441     fi
2442 edhill 1.1 fi
2443     fi
2444     done
2445     if test "x$deplist" != x ; then
2446 jmc 1.176 if test "$d" != "." ; then
2447     echo "" >> srclinks.tmp
2448 edhill 1.2 echo "# These files are linked from $d" >> srclinks.tmp
2449 edhill 1.1 echo "$deplist :" >> srclinks.tmp
2450 jahn 1.170 # We need to make sure that the link isn't already there.
2451     # This may happen when make thinks that a header file has to be "remade"
2452     # because a module it depends on has changed. In this case we do nothing.
2453     printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2454 jmc 1.176 fi
2455 edhill 1.1 fi
2456     done
2457     rm -rf .links.tmp
2458 jmc 1.176 echo "" >> F77srclist.tmp
2459     echo "" >> nonADF77srclist.tmp
2460     echo "" >> csrclist.tmp
2461     echo "" >> F90srclist.tmp
2462     echo "" >> hsrclist.tmp
2463     echo "" >> ad_flow_files.tmp
2464 edhill 1.1
2465 edhill 1.88 if test -f $MAKEFILE ; then
2466 edhill 1.1 mv -f $MAKEFILE "$MAKEFILE.bak"
2467     fi
2468     echo " Writing makefile: $MAKEFILE"
2469     echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
2470     echo "# $MACHINE" >> $MAKEFILE
2471     echo "# This makefile was generated automatically on" >> $MAKEFILE
2472     echo "# $THISDATE" >> $MAKEFILE
2473     echo "# by the command:" >> $MAKEFILE
2474 edhill 1.73 echo "# $0 $G2ARGS" >> $MAKEFILE
2475 edhill 1.1 echo "# executed by:" >> $MAKEFILE
2476 edhill 1.97 echo "# ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2477 edhill 1.21
2478     EXE_AD=$EXECUTABLE"_ad"
2479     EXE_FTL=$EXECUTABLE"_ftl"
2480     EXE_SVD=$EXECUTABLE"_svd"
2481    
2482 edhill 1.1 cat >>$MAKEFILE <<EOF
2483 edhill 1.53 #
2484     # OPTFILE="$OPTFILE"
2485 edhill 1.1 #
2486     # BUILDDIR : Directory where object files are written
2487     # SOURCEDIRS : Directories containing the source (.F) files
2488     # INCLUDEDIRS : Directories containing the header-source (.h) files
2489     # EXEDIR : Directory where executable that is generated is written
2490     # EXECUTABLE : Full path of executable binary
2491     #
2492     # CPP : C-preprocessor command
2493     # INCLUDES : Directories searched for header files
2494     # DEFINES : Macro definitions for CPP
2495     # MAKEDEPEND : Dependency generator
2496     # KPP : Special preprocessor command (specific to platform)
2497     # KFLAGS : Flags for KPP
2498     # FC : Fortran compiler command
2499     # FFLAGS : Configuration/debugging options for FC
2500     # FOPTIM : Optimization options for FC
2501     # LINK : Command for link editor program
2502     # LIBS : Library flags /or/ additional optimization/debugging flags
2503    
2504     ROOTDIR = ${ROOTDIR}
2505     BUILDDIR = ${BUILDDIR}
2506     SOURCEDIRS = ${SOURCEDIRS}
2507     INCLUDEDIRS = ${INCLUDEDIRS}
2508     EXEDIR = ${EXEDIR}
2509     EXECUTABLE = \$(EXEDIR)/${EXECUTABLE}
2510     TOOLSDIR = ${TOOLSDIR}
2511    
2512 edhill 1.14 #eh3 new defines for the adjoint work
2513     AUTODIFF = ${ROOTDIR}/pkg/autodiff
2514 edhill 1.21 EXE_AD = ${EXE_AD}
2515     EXE_FTL = ${EXE_FTL}
2516     EXE_SVD = ${EXE_SVD}
2517 edhill 1.14
2518 adcroft 1.44 ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2519     DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2520    
2521 adcroft 1.52 # These files are created by Makefile
2522 edhill 1.97 SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2523 edhill 1.141 EOF
2524 adcroft 1.52
2525 edhill 1.141 if test "x$EMBED_SRC" = xt ; then
2526     echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2527     else
2528     echo "EMBEDDED_FILES = " >>$MAKEFILE
2529     fi
2530 edhill 1.1
2531 edhill 1.141 # Note: figure out some way to add Hyades JAM libraries here
2532 edhill 1.1 cat >>$MAKEFILE <<EOF
2533     # Unix ln (link)
2534     LN = ${LN}
2535     # C preprocessor
2536     CPP = cat \$< | ${S64} | ${CPP}
2537     # Dependency generator
2538     MAKEDEPEND = ${MAKEDEPEND}
2539     # Special preprocessor (KAP on DECs, FPP on Crays)
2540     KPP = ${KPP}
2541     # Fortran compiler
2542 edhill 1.94 FC = ${FC}
2543 cnh 1.3 # Fortran compiler
2544     F90C = ${F90C}
2545 edhill 1.92 # C compiler
2546     CC = ${CC}
2547 edhill 1.1 # Link editor
2548 edhill 1.70 LINK = ${LINK} ${LDADD}
2549 edhill 1.1
2550     # Defines for CPP
2551     DEFINES = ${DEFINES}
2552     # Includes for CPP
2553     INCLUDES = ${INCLUDES}
2554     # Flags for KPP
2555     KFLAGS1 = ${KFLAGS1}
2556     KFLAGS2 = ${KFLAGS2}
2557     # Optim./debug for FC
2558 mlosch 1.165 FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2559 edhill 1.1 FOPTIM = ${FOPTIM}
2560 cnh 1.3 # Optim./debug for FC
2561     F90FLAGS = ${F90FLAGS}
2562     F90OPTIM = ${F90OPTIM}
2563 jmc 1.176 F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2564 edhill 1.1 # Flags for CC
2565     CFLAGS = ${CFLAGS}
2566     # Files that should not be optimized
2567     NOOPTFILES = ${NOOPTFILES}
2568     NOOPTFLAGS = ${NOOPTFLAGS}
2569     # Flags and libraries needed for linking
2570 edhill 1.107 LIBS = ${LIBS}
2571 cnh 1.3 # Name of the Mekfile
2572     MAKEFILE=${MAKEFILE}
2573 edhill 1.1
2574     EOF
2575    
2576 jmc 1.176 cat F77srclist.tmp >> $MAKEFILE
2577     cat nonADF77srclist.tmp >> $MAKEFILE
2578     cat csrclist.tmp >> $MAKEFILE
2579     cat F90srclist.tmp >> $MAKEFILE
2580     cat hsrclist.tmp >> $MAKEFILE
2581     cat ad_flow_files.tmp >> $MAKEFILE
2582    
2583     rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2584    
2585 edhill 1.75 echo >> $MAKEFILE
2586 jmc 1.176
2587     # add definitions for preprocessed sources
2588     # and note that not all systems allow case sensitive extensions
2589     # hence the $FS and $FS90 here.
2590     # for fixed format f90 files we use ff90 or FF90 resp
2591     # but these are not expected to be the original source files
2592    
2593     echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')' >> $MAKEFILE
2594     echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2595     echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2596 dfer 1.172 echo 'FLOFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2597 edhill 1.75 echo >> $MAKEFILE
2598     echo '.SUFFIXES:' >> $MAKEFILE
2599 jmc 1.176 echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2600 edhill 1.1
2601     cat >>$MAKEFILE <<EOF
2602    
2603     all: \$(EXECUTABLE)
2604 jmc 1.176 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2605 adcroft 1.44 @echo Creating \$@ ...
2606 edhill 1.1 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2607     depend:
2608     @make links
2609 jmc 1.176 \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2610 adcroft 1.44 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2611 edhill 1.72 -rm -f makedepend.out
2612 edhill 1.1
2613 cnh 1.132 lib: libmitgcmuv.a
2614    
2615     libmitgcmuv.a: \$(OBJFILES)
2616     ar rcv libmitgcmuv.a \$(OBJFILES)
2617 cnh 1.159 ar d libmitgcmuv.a main.o
2618 cnh 1.132
2619 jmc 1.176 links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2620 edhill 1.1
2621 jmc 1.176 small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2622 edhill 1.1
2623     output.txt: \$(EXECUTABLE)
2624     @printf 'running ... '
2625     @\$(EXECUTABLE) > \$@
2626    
2627     clean:
2628 heimbach 1.157 -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2629     -rm -rf *.o
2630 dfer 1.172 -rm -rf *.$FS *.flowdir
2631 jmc 1.176 -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2632 utke 1.178 -rm -rf temp.sed
2633 edhill 1.1 Clean:
2634     @make clean
2635     @make cleanlinks
2636 adcroft 1.52 -rm -f \$(SPECIAL_FILES)
2637 dfer 1.172 -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2638 jmc 1.166 -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2639 edhill 1.1 CLEAN:
2640     @make Clean
2641     -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2642     -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2643     -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2644 jmc 1.152 -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2645 jmc 1.166 -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2646 edhill 1.144 -rm -rf mnc_test_*
2647 edhill 1.1
2648 edhill 1.18 #eh3 Makefile: makefile
2649 edhill 1.1 makefile:
2650 edhill 1.73 $THIS_SCRIPT $G2ARGS
2651 edhill 1.1 cleanlinks:
2652     -find . -type l -exec rm {} \;
2653    
2654 jmc 1.176 # Special targets (SPECIAL_FILES) which are created by make
2655 adcroft 1.44 ${PACKAGES_DOT_H}:
2656     @echo Creating \$@ ...
2657 edhill 1.71 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2658 adcroft 1.44 AD_CONFIG.h:
2659     @echo Creating \$@ ...
2660 edhill 1.71 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2661 adcroft 1.52 FC_NAMEMANGLE.h:
2662     @echo Creating \$@ ...
2663     echo "$FC_NAMEMANGLE" > \$@
2664 adcroft 1.44
2665 edhill 1.97 BUILD_INFO.h:
2666     @echo Creating \$@ ...
2667     EOF
2668    
2669     test ! "x$THISVER" = x && echo " -echo \"#define THISVER '$THISVER'\" > \$@" >> $MAKEFILE
2670     test ! "x$THISUSER" = x && echo " -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2671     test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2672     test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2673    
2674 edhill 1.141 if test "x$EMBED_SRC" = xt ; then
2675     cat >>$MAKEFILE <<EOF
2676    
2677     decode_files.o : EMBEDDED_FILES.h
2678    
2679 jmc 1.176 ## \$(F77_PP_SRC_FILES)
2680     all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2681 edhill 1.141 @echo Creating \$@ ...
2682 jmc 1.176 -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2683 edhill 1.141 -rm -f all_fF.tar.gz
2684     -gzip all_fF.tar
2685    
2686     EMBEDDED_FILES.h : all_fF.tar.gz
2687     @echo Creating \$@ ...
2688     -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2689    
2690     EOF
2691     fi
2692    
2693 edhill 1.97 cat >>$MAKEFILE <<EOF
2694    
2695 edhill 1.76 # The normal chain of rules is ( .F - .$FS - .o )
2696    
2697 edhill 1.101 ## This nullifies any default implicit rules concerning these two file types:
2698 jmc 1.177 ## %.o : %.F
2699 edhill 1.76
2700     .F.$FS:
2701 edhill 1.1 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2702 edhill 1.76 .$FS.o:
2703 edhill 1.1 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2704 jmc 1.176 .F90.$FS90:
2705     \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2706     .FF90.f$FS90:
2707     \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2708     .$FS90.o:
2709 cnh 1.3 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2710 jmc 1.176 .f$FS90.o:
2711     cp \$< \$(basename \$<).f90
2712     \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename \$<).f90
2713 edhill 1.1 .c.o:
2714 ce107 1.139 \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2715 dfer 1.172 .flow.flowdir:
2716 heimbach 1.171 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2717 edhill 1.1
2718 edhill 1.76 # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2719     .F.p:
2720 edhill 1.1 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2721 edhill 1.76 .p.$FS:
2722 edhill 1.1 \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2723 edhill 1.14
2724 jmc 1.176 EOF
2725    
2726 edhill 1.14 #=========================================
2727     #=== Automatic Differentiation Rules ===
2728 jmc 1.176 #=== for TAMC/TAF ======================
2729    
2730     if test "x$OPENAD" == x ; then
2731    
2732     cat >>$MAKEFILE <<EOF
2733 edhill 1.14
2734     TAMC = ${TAMC}
2735     TAF = ${TAF}
2736    
2737 edhill 1.17 TAF_EXTRA = ${TAF_EXTRA}
2738     TAMC_EXTRA = ${TAMC_EXTRA}
2739    
2740 edhill 1.14 EOF
2741    
2742     ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2743     ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2744     ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2745     for i in $ad_vars ; do
2746     name=$i
2747 edhill 1.151 t1="t2=\$"`echo "$i"`
2748 edhill 1.14 eval $t1
2749     printf "%-20s = " $name >> $MAKEFILE
2750 edhill 1.151 echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2751 edhill 1.14 done
2752    
2753     echo " Add the source list for AD code generation"
2754     echo >> $MAKEFILE
2755 edhill 1.71 printf "AD_FILES = " >> $MAKEFILE
2756 jmc 1.176 AD_FILES=`cat adSrcFiles.tmp`
2757 edhill 1.14 for i in $AD_FILES ; do
2758     echo " \\" >> $MAKEFILE
2759 edhill 1.71 printf " $i" >> $MAKEFILE
2760 edhill 1.14 done
2761     echo >> $MAKEFILE
2762 jmc 1.176 rm -f adSrcFiles.tmp
2763 edhill 1.14
2764     cat >>$MAKEFILE <<EOF
2765    
2766 edhill 1.16 # ... AD ...
2767 jmc 1.152 adall: \$(EXE_AD)
2768 edhill 1.121 adtaf: ad_taf_output.$FS
2769     adtamc: ad_tamc_output.$FS
2770 edhill 1.21
2771 jmc 1.176 ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2772 edhill 1.71 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2773 edhill 1.23 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2774 adcroft 1.44 -rm -f ad_config.template
2775 jmc 1.176 @make \$(F77_PP_SRC_FILES)
2776 heimbach 1.171 @make \$(FLOFILES)
2777     cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2778 edhill 1.22
2779 edhill 1.121 ad_taf_output.$FS: ad_input_code.$FS
2780     \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2781 jmc 1.173 ls -l ad_input_code_ad.$FS
2782 edhill 1.121 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2783 heimbach 1.37
2784     adtafonly:
2785 edhill 1.121 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2786 jmc 1.173 ls -l ad_input_code_ad.$FS
2787 edhill 1.121 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2788 edhill 1.14
2789 jmc 1.152 \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2790     \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2791 edhill 1.14
2792 edhill 1.121 ad_tamc_output.$FS: ad_input_code.$FS
2793     \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2794     cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2795 edhill 1.14
2796     ad_tamc: ad_tamc_output.o \$(OBJFILES)
2797 edhill 1.21 \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2798 edhill 1.14
2799 heimbach 1.105 adonlyfwd:
2800 edhill 1.106 patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2801 heimbach 1.105
2802     adtrick:
2803 edhill 1.106 patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2804 edhill 1.14
2805 edhill 1.19 # ... FTL ...
2806 edhill 1.23 ftlall: ftl_taf
2807 edhill 1.121 ftltaf: ftl_taf_output.$FS
2808     ftltamc: ftl_tamc_output.$FS
2809 edhill 1.21
2810 jmc 1.176 ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2811 edhill 1.71 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2812 edhill 1.23 cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2813 adcroft 1.44 -rm -f ftl_config.template
2814 jmc 1.176 @make \$(F77_PP_SRC_FILES)
2815 edhill 1.22 @make \$(AD_FLOW_FILES)
2816 edhill 1.121 cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2817 edhill 1.22
2818 edhill 1.121 ftl_taf_output.$FS: ftl_input_code.$FS
2819     \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2820 jmc 1.173 ls -l ftl_input_code_ftl.$FS
2821 edhill 1.121 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2822 edhill 1.14
2823 heimbach 1.40 ftltafonly:
2824 edhill 1.121 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2825 jmc 1.173 ls -l ftl_input_code_ftl.$FS
2826 edhill 1.121 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2827 heimbach 1.40
2828 edhill 1.19 ftl_taf: ftl_taf_output.o \$(OBJFILES)
2829 edhill 1.21 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2830 edhill 1.14
2831 edhill 1.121 ftl_tamc_output.$FS: ftl_input_code.$FS
2832     \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2833     cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2834 edhill 1.16
2835 edhill 1.19 ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2836 edhill 1.21 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2837 edhill 1.16
2838    
2839     # ... SVD ...
2840 edhill 1.121 svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2841 heimbach 1.109 @echo "--->>> Only ran TAF to generate SVD code! <<<---"
2842     @echo "--->>> Do make svdall afterwards to compile. <<<---"
2843     svdall: svd_touch svd_taf
2844 edhill 1.16
2845 heimbach 1.109 svd_taf: \$(OBJFILES)
2846 heimbach 1.40 \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2847 edhill 1.14
2848 heimbach 1.109 @echo "--->>> Only COMPILE svd code! <<<---"
2849     @echo "--->>> Assumes you previously <<<---"
2850     @echo "--->>> did make svdtaf <<<---"
2851    
2852     svd_touch:
2853     @echo "--->>> Only COMPILE svd code! <<<---"
2854     @echo "--->>> Assumes you previously <<<---"
2855     @echo "--->>> did make svdtaf <<<---"
2856 edhill 1.121 touch ad_taf_output.$FS ftl_taf_output.$FS
2857     \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2858     \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2859 heimbach 1.109 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2860     cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2861     -rm -f ftl_config.template
2862 edhill 1.14
2863 jmc 1.176 EOF
2864    
2865     fi
2866    
2867     #=== for OpenAD ========================
2868    
2869     if test "x$OPENAD" != x ; then
2870    
2871     # ============ begin OpenAD specific section ==============
2872    
2873     cat >>$MAKEFILE <<EOF
2874    
2875     # all the source files linked from the various locations:
2876     ALL_LINKED_FILES= \
2877     \$(F77_SRC_FILES) \
2878     \$(C_SRC_FILES) \
2879     \$(H_SRC_FILES) \
2880     \$(F90_SRC_FILES) \
2881     \$(SPECIAL_FILES)
2882    
2883     ifndef OPENADROOT
2884     \$(error "Error: environment variable OPENADROOT not defined!")
2885     endif
2886    
2887     ifndef XAIFSCHEMAROOT
2888     \$(error "Error: environment variable XAIFSCHEMAROOT not defined!")
2889     endif
2890    
2891     ifndef XAIFBOOSTERROOT
2892     \$(error "Error: environment variable XAIFBOOSTERROOT not defined!")
2893     endif
2894    
2895     EOF
2896    
2897     echo " Add the source list for common block to module conversion "
2898     echo >> $MAKEFILE
2899     printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2900     for i in `cat ${OAD_CB2M_FILES}` ; do
2901     echo " \\" >> $MAKEFILE
2902     printf " $i" >> $MAKEFILE
2903     done
2904     echo >> $MAKEFILE
2905    
2906     echo " Add the source list for AD code generation"
2907     echo >> $MAKEFILE
2908     printf "AD_FILES = " >> $MAKEFILE
2909     for i in `cat ${OAD_CB2M_FILES}` ; do
2910     echo " \\" >> $MAKEFILE
2911     printf " ${i}_mod.f$FS90" >> $MAKEFILE
2912     done
2913     AD_FILES=`cat adSrcFiles.tmp`
2914