#PBS -S /bin/bash
#PBS -N tst_ieee
#PBS -l select=1:ncpus=6:mpiprocs=6:model=san
#PBS -l walltime=12:00:00
#PBS -V
#PBS -e /u/jcampin/test_pleiades/output/tst_ieee.stderr
#PBS -o /u/jcampin/test_pleiades/output/tst_ieee.stdout

# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/example_scripts/nasa_ames/test_pleiades_ieee,v 1.4 2017/07/28 16:46:31 jmc Exp $
# $Name:  $

if test -f /etc/profile.d/modules.sh ; then
    . /etc/profile.d/modules.sh
fi
# Note: added "ulimit -s unlimited" in file "~/.bashrc"
# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI

umask 0022
#- to get case insensitive "ls" (and order of tested experiments)
export LC_ALL="en_US.UTF-8"
echo " running on: "`hostname`

dNam='pleiades'
HERE="$HOME/test_$dNam"
OUTP="$HERE/output"; SavD="$HERE/send"
SEND="ssh pfe $SavD/mpack"
TST_DISK="/nobackupp2/jcampin"
TST_DIR="$TST_DISK/test_${dNam}"

cd $TST_DISK ; pwd
if test -d $TST_DIR ; then
  echo "start from TST_DIR='$TST_DIR' at: "`date`
else
  echo "ERROR: missing directory \"$TST_DIR\""
  exit 1
fi

#sfx='ifc'
sfx='ieee'
#sfx='fast'

 typ='' ; addExp=''
#addExp='global_ocean.gm_k3d global_ocean.gm_res'
 module purge
 module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 netcdf/4.4.1.1_serial
 module list

 OPTFILE="../tools/build_options/linux_amd64_ifort+mpi_ice_nas"
 options="-j 2 $typ -MPI 6"
 mpiCMD='mpiexec_mpt -np TR_NPROC ./mitgcmuv'
#- need this to get "staf":
#export PATH="$PATH:$HOME/bin"

dInWeek=`date +%a`
#if test "x$dInWeek" = xSun ; then options="$options -fast" ; fi
 if test $sfx = 'fast' ; then options="$options -fast" ; fi

checkOut=2
#options="$options -nc" ; checkOut=1
#options="$options -q"  ; checkOut=0

#- keep a copy of MPI_MFILE:
#cp -p $PBS_NODEFILE $OUTP"/mf_"$sfx

cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
gcmDIR="MITgcm_$sfx"
cd $TST_DIR

if [ $checkOut -eq 1 ] ; then
  if test -d $gcmDIR/CVS ; then
#- remove previous output tar files and tar & remove previous output-dir
    /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz
    ( cd $gcmDIR/verification
      listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null`
      for dd in $listD
      do
        if test -d $dd ; then
          tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd
          RETVAL=$?
          if test "x$RETVAL" != x0 ; then
             echo "ERROR in tar+gzip prev outp-dir: $dd"
             echo " on '"`hostname`"' (return val=$RETVAL) but continue"
          fi
        fi
      done )
    echo "clean tst_2+2 + testreport output (+ Makefile_syntax files)"
    ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean )
    ( cd $gcmDIR/verification ; ./testreport $typ -clean )
#   ( cd $gcmDIR/verification ; rm -f */build/Makefile_syntax )
#   ( cd $gcmDIR/verification ; rm -f */build/port_rand.i */build/ptracers_set_iolabel.i )
    echo "cvs update of dir $gcmDIR :"
    ( cd $gcmDIR ; $cmdCVS update -P -d ) 2>&1
    RETVAL=$?
    if test "x$RETVAL" != x0 ; then
       echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit"
       exit
    fi
  else
    echo "no dir: $gcmDIR/CVS => try a fresh check-out"
    checkOut=2
  fi
fi
if [ $checkOut -eq 2 ] ; then
  if test -e $gcmDIR ; then
    echo -n "Removing working copy: $gcmDIR ..."
    rm -rf $gcmDIR
    echo "  done"
  fi
 #echo "Downloading using '$cmdCVS co -P -d $gcmDIR MITgcm' ..."
 #$cmdCVS co -P -d $gcmDIR MITgcm > /dev/null
 #RETVAL=$?
 #if test "x$RETVAL" != x0 ; then
 #    echo "cvs co on '"`hostname`"' fail (return val=$RETVAL) => exit"
 #    exit
 #fi
 #if test -d $gcmDIR/verification ; then
 #  /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs
 #  /usr/bin/find $gcmDIR -type f | xargs chmod g+r
 #fi
#- make a local copy (instead of using CVS):
  today=`date +%Y%m%d`
  nCount=0; updFile='updated_code'
  updDate=0 ; test -f $updFile && updDate=`cat $updFile`
  while [ $today -gt $updDate ] ; do
   nCount=`expr $nCount + 1`
   if [ $nCount -gt 40 ] ; then
     echo " waiting too long (nCount=$nCount) for updated code"
     echo " today=$today , updDate=$updDate "
     ls -l $updFile
     exit
   fi
   sleep 60
   updDate=0 ; test -f $updFile && updDate=`cat $updFile`
  done
  ls -l $updFile
  echo " waited nCount=$nCount for updated code ($updDate) to copy"
  if test -d MITgcm ; then
    echo -n "Make local copy of dir 'MITgcm' to: $gcmDIR ..."
    cp -pra MITgcm $gcmDIR
    echo "  done"
  else echo " dir: MITgcm missing => exit" ; exit ; fi
fi

#- change dir to $gcmDIR/verification dir:
if test -e $gcmDIR/verification ; then
  if [ $checkOut -lt 2 ] ; then
    echo " dir $gcmDIR/verification exist" ; fi
  cd $gcmDIR/verification
#------------
  for exp2add in $addExp ; do
    if test -d ${exp2add}/CVS ; then
      echo "  assumes dir: $exp2add has been updated"
    else
      test -r $exp2add && /bin/rm -rf $exp2add
      echo " add dir: $exp2add (from Contrib:verification_other)"
      ( $cmdCVS co -P -d $exp2add \
                     MITgcm_contrib/verification_other/$exp2add > /dev/null )
      if test $exp2add = 'global_oce_cs32' ; then
        echo "  link dir 'other_input/core2_cnyf' in here"
        ( cd ${exp2add} ; ln -s ../../../other_input/core2_cnyf . )
      fi
      if test $exp2add = 'global_oce_llc90' ; then
        echo "  link dir 'other_input/gael_oce_llc90_input' to 'input_fields'"
        ( cd ${exp2add} ; ln -s  ../../../other_input/gael_oce_llc90_input input_fields )
        echo "  link dirs: 'core2_cnyf' & 'global_oce_input_fields/*' in input_verifs"
        ( test ! -e ${exp2add}/input_verifs && mkdir ${exp2add}/input_verifs
          cd ${exp2add}/input_verifs
          ln -s ../../../../other_input/core2_cnyf .
          ln -s ../../../../other_input/global_oce_input_fields/* . )
      fi
      /usr/bin/find $exp2add -type d | xargs chmod g+rxs
      /usr/bin/find $exp2add -type f | xargs chmod g+r
    fi
  done
else
  echo "no dir: $gcmDIR/verification => exit"
  exit
fi

dInWeek='Sun'
if test "x$dInWeek" = xSun ; then
 #options="$options -fast"

  echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -command \"$mpiCMD\" -send \"$SEND\" -sd $SavD -a jmc@dev.mitgcm.org
  ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -command "$mpiCMD" -send "$SEND" -sd $SavD -a jmc@dev.mitgcm.org

  echo ''
  echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -exe \"$mpiCMD\" -send \"$SEND\" -sd $SavD -a jmc@dev.mitgcm.org
  ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -exe "$mpiCMD" -send "$SEND" -sd $SavD -a jmc@dev.mitgcm.org

else
  options="$options -devel"

  echo ./testreport $options -of $OPTFILE \
    -repl_mk do_make_syntax.sh -obj -dd
  ./testreport $options -of $OPTFILE \
    -repl_mk do_make_syntax.sh -obj -dd 2>&1

  echo ''
  echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -q -send \"$SEND\" -sd $SavD -a jmc@dev.mitgcm.org
  ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \
    -q -send "$SEND" -sd $SavD -a jmc@dev.mitgcm.org

  echo ''
  echo ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -send \"$SEND\" -sd $SavD -a jmc@dev.mitgcm.org
  ../tools/do_tst_2+2 -mpi -o ${dNam}-$sfx \
    -send "$SEND" -sd $SavD -a jmc@dev.mitgcm.org

fi