/[MITgcm]/MITgcm/tools/example_scripts/nasa_ames/test_clean_pleiades
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Contents of /MITgcm/tools/example_scripts/nasa_ames/test_clean_pleiades

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Revision 1.1 - (show annotations) (download)
Fri Apr 21 19:21:28 2017 UTC (7 years ago) by jmc
Branch: MAIN
CVS Tags: checkpoint66g, checkpoint66o, checkpoint66n, checkpoint66m, checkpoint66l, checkpoint66k, checkpoint66j, checkpoint66i, checkpoint66h, HEAD
add a script to clean-up testing dir (over quota for number of files)

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm/tools/example_scripts/nasa_ames/test_submit_pleiades,v 1.1 2017/04/20 22:14:26 jmc Exp $
4 # $Name: $
5
6 today=`date +%Y%m%d`
7 dInWeek=`date +%a`
8
9 if test $# = 0
10 then
11 TEST_LIST='ieee fast'
12 else
13 TEST_LIST=$*
14 fi
15
16 headNode=`hostname -s`
17 QSUB="/PBS/bin/qsub"
18 QSTAT="/PBS/bin/qstat -u $USER"
19 #dNam=$headNode
20 #QSUB="/usr/bin/sbatch"
21 #QLIST="/usr/bin/squeue -u $USER"
22 dNam='pleiades'
23 HERE="$HOME/test_${dNam}"
24 TST_DISK="/nobackupp2/$USER"
25 TST_DIR="$TST_DISK/test_${dNam}"
26 logPfix='test_clean'
27
28 SUB_DIR="$HERE/nasa_ames"
29 OUT_DIR="$HERE/output"
30 LOG_FIL="$OUT_DIR/$logPfix."`date +%m%d`".log"
31 SUB_DIR="$HERE/temp"
32
33 #-- clean up old log files and start a new one:
34 cd $OUT_DIR
35
36 rm -f $logPfix.*.log_bak
37 if test -f $LOG_FIL ; then mv -f $LOG_FIL ${LOG_FIL}_bak ; fi
38 echo -n '-- Starting: ' | tee -a $LOG_FIL
39 date | tee -a $LOG_FIL
40
41 n=$(( `ls $logPfix.*.log | wc -l` - 10 ))
42 if test $n -gt 0 ; then
43 echo ' remove old log files:' | tee -a $LOG_FIL
44 ls -lt $logPfix.*.log | tail -"$n" | tee -a $LOG_FIL
45 ls -t $logPfix.*.log | tail -"$n" | xargs rm -f
46 fi
47
48 #-------------------------------------------------------------
49 # defaults
50 #export PATH="$PATH:/usr/local/bin"
51 if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi
52 #- to get case insensitive "ls" (and order of tested experiments)
53 export LC_ALL="en_US.UTF-8"
54 # Turn off stack limit for FIZHI & AD-tests
55 #ulimit -s unlimited
56
57 if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh ; fi
58 #- load standard modules:
59 #module add fedora slurm maui svante
60 #module add slurm
61 module list >> $LOG_FIL 2>&1
62
63 #- method to acces CVS:
64 cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack -q'
65
66 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
67
68 echo "cd $TST_DISK ; pwd (x2)" | tee -a $LOG_FIL
69 cd $TST_DISK | tee -a $LOG_FIL 2>&1
70 pwd | tee -a $LOG_FIL
71 if test ! -d $TST_DIR ; then
72 echo -n "Missing working dir: $TST_DIR ..." | tee -a $LOG_FIL
73 echo " --> exit" | tee -a $LOG_FIL
74 fi
75 cd $TST_DIR
76 pwd | tee -a $LOG_FIL
77
78 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
79 #-- now really do something:
80
81 for sfx in $TEST_LIST
82 do
83 gcmDIR="MITgcm_$sfx"
84 echo " " | tee -a $LOG_FIL
85 if test -d $gcmDIR/verification ; then
86 echo "==>> Cleaning testing dir $gcmDIR" | tee -a $LOG_FIL
87 ( cd $gcmDIR/verification
88 echo " run: ../tools/do_tst_2+2 -clean" | tee -a $LOG_FIL
89 ../tools/do_tst_2+2 -clean >> $LOG_FIL
90 echo " running: clean_exp_fast mnc" | tee -a $LOG_FIL
91 clean_exp_fast mnc >> $LOG_FIL
92 echo " running: clean_exp_fast outp" | tee -a $LOG_FIL
93 clean_exp_fast outp >> $LOG_FIL
94 echo " running: clean_exp_fast Obj" | tee -a $LOG_FIL
95 clean_exp_fast Obj >> $LOG_FIL
96 )
97 echo " <== cleaning $gcmDIR : Done" | tee -a $LOG_FIL
98 else
99 echo "Missing testing dir $gcmDIR" | tee -a $LOG_FIL
100 fi
101 done
102 date | tee -a $LOG_FIL
103
104 #---+----1----+----2----+----3----+----4----+----5----+----6----+----7-|--+----|
105 exit 0

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