| 1 |
#!/bin/bash |
| 2 |
#SBATCH -J trintel |
| 3 |
#SBATCH -p sched_mit_darwin |
| 4 |
#SBATCH --mem-per-cpu 4000 |
| 5 |
#SBATCH -n 6 |
| 6 |
#SBATCH -N 2 |
| 7 |
NSLOTS=$SLURM_NTASKS |
| 8 |
echo '********************************************************************************' |
| 9 |
THEDATE=`date` |
| 10 |
echo 'Start job '$THEDATE |
| 11 |
echo 'NSLOTS = '$NSLOTS |
| 12 |
echo '======= NODELIST ===============================================================' |
| 13 |
echo $SLURM_NODELIST |
| 14 |
echo '======= env ====================================================================' |
| 15 |
env |
| 16 |
echo '================================================================================' |
| 17 |
|
| 18 |
source /etc/profile.d/modules.sh |
| 19 |
module add engaging/intel/2013.1.046 |
| 20 |
|
| 21 |
# to make sort order case-insensitive |
| 22 |
export LC_ALL=en_US.iso885915 |
| 23 |
|
| 24 |
doieee=0 |
| 25 |
dompi=0 |
| 26 |
dompidevel=1 |
| 27 |
dompifast=1 |
| 28 |
dodarwin=0 |
| 29 |
dodarwin2=0 |
| 30 |
dodarwin2mpi=0 |
| 31 |
|
| 32 |
dofast=0 |
| 33 |
dodarwinmpi=0 |
| 34 |
|
| 35 |
dirpre=engaging1-ifort |
| 36 |
pre=ifort |
| 37 |
defopts="-j 7" |
| 38 |
#cleanopts="-postclean" |
| 39 |
cleanopts= |
| 40 |
trmpiopts="-MPI $NSLOTS" |
| 41 |
optfile="../tools/build_options/linux_amd64_ifort+impi" |
| 42 |
mpioptfile="../tools/build_options/linux_amd64_ifort+impi" |
| 43 |
mpicommand="mpirun -env I_MPI_DEBUG 2 -n TR_NPROC ./mitgcmuv" |
| 44 |
|
| 45 |
# NONE will not send email, but keep rs_* directory |
| 46 |
#mailrcpt="-a NONE" |
| 47 |
mailrcpt="-a jmc@mitgcm.org" |
| 48 |
mailfw="$mailrcpt" |
| 49 |
mailrs="$mailrcpt" |
| 50 |
maildf="jahn@mitgcm.org" |
| 51 |
mailhost=eofe4 |
| 52 |
|
| 53 |
# relative to MITgcm/verification |
| 54 |
refdir=../../ref |
| 55 |
|
| 56 |
cpmodel() { |
| 57 |
newgcmDIR="$1" |
| 58 |
if test -e $newgcmDIR ; then |
| 59 |
rm -rf $newgcmDIR |
| 60 |
fi |
| 61 |
cp -a MITgcm $newgcmDIR |
| 62 |
} |
| 63 |
|
| 64 |
cpmodel1() { |
| 65 |
newgcmDIR="$1" |
| 66 |
if test -e $newgcmDIR ; then |
| 67 |
rm -rf $newgcmDIR |
| 68 |
fi |
| 69 |
cp -a MITgcm_darwin1 $newgcmDIR |
| 70 |
} |
| 71 |
|
| 72 |
cpmodel2() { |
| 73 |
newgcmDIR="$1" |
| 74 |
if test -e $newgcmDIR ; then |
| 75 |
rm -rf $newgcmDIR |
| 76 |
fi |
| 77 |
cp -a MITgcm_darwin2 $newgcmDIR |
| 78 |
} |
| 79 |
|
| 80 |
maildiff() { |
| 81 |
summaryref="$1" |
| 82 |
odir="$2" |
| 83 |
subject="$3" |
| 84 |
npassref=`grep -c -e ' pass ' $summaryref` |
| 85 |
ntotref=`grep -c -e ' \(pass\|FAIL\|N/O\) ' $summaryref` |
| 86 |
summary=`pwd`/`ls tr_${odir}_*/summary.txt` |
| 87 |
npass=`grep -c -e ' pass ' $summary` |
| 88 |
ntot=`grep -c -e ' \(pass\|FAIL\|N/O\) ' $summary` |
| 89 |
echo "npass=$npass" |
| 90 |
echo "ntot=$ntot" |
| 91 |
diff -I time: -I 'on :' -I run: $summaryref $summary | grep -v -e 'run:' -e 'on :' > diff.out |
| 92 |
difflen=`cat diff.out | wc -l` |
| 93 |
ssh $mailhost "cat $summary `pwd`/diff.out | mail -s '"$subject$odir" "$npass"/"$ntot" ["$npassref"/"$ntotref"] "$difflen"' $maildf" |
| 94 |
} |
| 95 |
|
| 96 |
maildiff2p2() { |
| 97 |
summaryref="$1" |
| 98 |
odir="$2" |
| 99 |
subject="$3" |
| 100 |
npassref=`grep -c -e ' pass ' $summaryref` |
| 101 |
ntotref=`grep -c -e ' \(pass\|FAIL\|N/O\) ' $summaryref` |
| 102 |
summary=`pwd`/`ls rs_${odir}_*/summary.txt` |
| 103 |
npass=`grep -c -e ' pass ' $summary` |
| 104 |
ntot=`grep -c -e ' \(pass\|FAIL\|N/O\) ' $summary` |
| 105 |
echo "npass=$npass" |
| 106 |
echo "ntot=$ntot" |
| 107 |
diff -I 'End time:' -I 'on :' -I run: "$summaryref" $summary | grep -v -e 'run:' -e 'on :' > diff.out |
| 108 |
difflen=`cat diff.out | wc -l` |
| 109 |
ssh $mailhost "cat $summary `pwd`/diff.out | mail -s '"$subject$odir" 2+2 "$npass"/"$ntot" ["$npassref"/"$ntotref"] "$difflen"' $maildf" |
| 110 |
} |
| 111 |
|
| 112 |
######################################################################## |
| 113 |
if test $dompi -ne 0; then |
| 114 |
|
| 115 |
sfx=mpi |
| 116 |
dirsfx=$pre-$sfx |
| 117 |
odir="$dirpre-$sfx" |
| 118 |
|
| 119 |
echo '--------------------------------------------------------------------------------' |
| 120 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 121 |
|
| 122 |
cpmodel MITgcm_$dirsfx |
| 123 |
|
| 124 |
cd MITgcm_$dirsfx/verification |
| 125 |
|
| 126 |
echo ./testreport $defopts $trmpiopts -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 127 |
./testreport $defopts $trmpiopts -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 128 |
|
| 129 |
maildiff "$refdir/summary_$dirsfx.txt" "$odir" |
| 130 |
|
| 131 |
echo ../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 132 |
../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 133 |
|
| 134 |
maildiff2p2 "$refdir/summary_2+2_$dirsfx.txt" "$odir" |
| 135 |
|
| 136 |
for d in */build; do make -C $d Clean; done |
| 137 |
|
| 138 |
cd ../.. |
| 139 |
|
| 140 |
THEDATE=`date` |
| 141 |
echo '--------------------------------------------------------------------------------' |
| 142 |
echo "End $dirsfx $THEDATE" |
| 143 |
echo '--------------------------------------------------------------------------------' |
| 144 |
|
| 145 |
fi |
| 146 |
|
| 147 |
######################################################################## |
| 148 |
if test $doieee -ne 0; then |
| 149 |
|
| 150 |
sfx= |
| 151 |
dirsfx=$pre |
| 152 |
odir="$dirpre" |
| 153 |
|
| 154 |
echo '--------------------------------------------------------------------------------' |
| 155 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 156 |
|
| 157 |
cpmodel MITgcm_$dirsfx |
| 158 |
|
| 159 |
cd MITgcm_$dirsfx/verification |
| 160 |
|
| 161 |
echo ./testreport $defopts -optfile "$optfile" -odir "$odir" $mailfw |
| 162 |
./testreport $defopts $cleanopts -optfile "$optfile" -odir "$odir" $mailfw |
| 163 |
|
| 164 |
maildiff "$refdir/summary_$dirsfx.txt" "$odir" |
| 165 |
|
| 166 |
cd ../.. |
| 167 |
|
| 168 |
THEDATE=`date` |
| 169 |
echo '--------------------------------------------------------------------------------' |
| 170 |
echo "End $dirsfx $THEDATE" |
| 171 |
echo '--------------------------------------------------------------------------------' |
| 172 |
|
| 173 |
fi |
| 174 |
|
| 175 |
######################################################################## |
| 176 |
if test $dompidevel -ne 0; then |
| 177 |
|
| 178 |
sfx=mpi-dvlp |
| 179 |
options="$defopts $trmpiopts -devel" |
| 180 |
dirsfx=$pre-$sfx |
| 181 |
odir="$dirpre-dvlp" |
| 182 |
|
| 183 |
echo '--------------------------------------------------------------------------------' |
| 184 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 185 |
|
| 186 |
cpmodel MITgcm_$dirsfx |
| 187 |
|
| 188 |
cd MITgcm_$dirsfx/verification |
| 189 |
|
| 190 |
echo ./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 191 |
./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 192 |
|
| 193 |
maildiff "$refdir/summary_$dirsfx.txt" "$odir" |
| 194 |
|
| 195 |
echo ../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 196 |
../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 197 |
|
| 198 |
maildiff2p2 "$refdir/summary_2+2_$dirsfx.txt" "$odir" |
| 199 |
|
| 200 |
for d in */build; do make -C $d Clean; done |
| 201 |
|
| 202 |
cd ../.. |
| 203 |
|
| 204 |
THEDATE=`date` |
| 205 |
echo '--------------------------------------------------------------------------------' |
| 206 |
echo "End $dirsfx $THEDATE" |
| 207 |
echo '--------------------------------------------------------------------------------' |
| 208 |
|
| 209 |
fi |
| 210 |
|
| 211 |
######################################################################## |
| 212 |
if test $dompifast -ne 0; then |
| 213 |
|
| 214 |
sfx=mpi-fast |
| 215 |
options="$defopts $trmpiopts -fast" |
| 216 |
dirsfx=$pre-$sfx |
| 217 |
odir="$dirpre-fast" |
| 218 |
|
| 219 |
echo '--------------------------------------------------------------------------------' |
| 220 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 221 |
|
| 222 |
cpmodel MITgcm_$dirsfx |
| 223 |
|
| 224 |
cd MITgcm_$dirsfx/verification |
| 225 |
|
| 226 |
echo ./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 227 |
./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw |
| 228 |
|
| 229 |
maildiff "$refdir/summary_$dirsfx.txt" "$odir" |
| 230 |
|
| 231 |
echo ../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 232 |
../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 233 |
|
| 234 |
maildiff2p2 "$refdir/summary_2+2_$dirsfx.txt" "$odir" |
| 235 |
|
| 236 |
for d in */build; do make -C $d Clean; done |
| 237 |
|
| 238 |
cd ../.. |
| 239 |
|
| 240 |
THEDATE=`date` |
| 241 |
echo '--------------------------------------------------------------------------------' |
| 242 |
echo "End $dirsfx $THEDATE" |
| 243 |
echo '--------------------------------------------------------------------------------' |
| 244 |
|
| 245 |
fi |
| 246 |
|
| 247 |
######################################################################## |
| 248 |
if test $dofast -ne 0; then |
| 249 |
|
| 250 |
sfx=fast |
| 251 |
|
| 252 |
options="$defopts -fast $cleanopts" |
| 253 |
dirsfx=$pre-$sfx |
| 254 |
odir="$dirpre-$sfx" |
| 255 |
|
| 256 |
echo '--------------------------------------------------------------------------------' |
| 257 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 258 |
|
| 259 |
cpmodel MITgcm_$dirsfx |
| 260 |
|
| 261 |
cd MITgcm_$dirsfx/verification |
| 262 |
|
| 263 |
echo ./testreport $options -optfile "$optfile" -odir "$odir" $mailfw |
| 264 |
./testreport $options -optfile "$optfile" -odir "$odir" $mailfw |
| 265 |
|
| 266 |
maildiff "$refdir/summary_$dirsfx.txt" "$odir" |
| 267 |
|
| 268 |
cd ../.. |
| 269 |
|
| 270 |
THEDATE=`date` |
| 271 |
echo '--------------------------------------------------------------------------------' |
| 272 |
echo "End $dirsfx $THEDATE" |
| 273 |
echo '--------------------------------------------------------------------------------' |
| 274 |
|
| 275 |
fi |
| 276 |
|
| 277 |
######################################################################## |
| 278 |
if test $dodarwinmpi -ne 0; then |
| 279 |
|
| 280 |
sfx=mpi |
| 281 |
|
| 282 |
options="$defopts $trmpiopts $cleanopts" |
| 283 |
dirsfx=$pre-$sfx |
| 284 |
odir="$dirpre-darwin-$sfx" |
| 285 |
|
| 286 |
echo '--------------------------------------------------------------------------------' |
| 287 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 288 |
|
| 289 |
gcmDIR="MITgcm_darwin_$dirsfx" |
| 290 |
cpmodel $gcmDIR |
| 291 |
|
| 292 |
cd $gcmDIR/verification |
| 293 |
|
| 294 |
exps="`ls -d darwin_*`" |
| 295 |
|
| 296 |
echo ./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw -t "$exps" |
| 297 |
./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw -t "$exps" |
| 298 |
|
| 299 |
maildiff "$refdir/summary_darwin_$dirsfx.txt" "$odir" |
| 300 |
|
| 301 |
#echo ../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 302 |
#../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 303 |
# |
| 304 |
#maildiff2p2 "$refdir/summary_2+2_$dirsfx.txt" "$odir" |
| 305 |
|
| 306 |
cd ../.. |
| 307 |
|
| 308 |
THEDATE=`date` |
| 309 |
echo '--------------------------------------------------------------------------------' |
| 310 |
echo "End $dirsfx $THEDATE" |
| 311 |
echo '--------------------------------------------------------------------------------' |
| 312 |
|
| 313 |
fi |
| 314 |
|
| 315 |
######################################################################## |
| 316 |
if test $dodarwin -ne 0; then |
| 317 |
|
| 318 |
sfx= |
| 319 |
|
| 320 |
options="$defopts" |
| 321 |
dirsfx=$pre |
| 322 |
odir="$dirpre-darwin" |
| 323 |
|
| 324 |
echo '--------------------------------------------------------------------------------' |
| 325 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 326 |
|
| 327 |
gcmDIR="MITgcm_darwin_$dirsfx" |
| 328 |
cpmodel1 $gcmDIR |
| 329 |
|
| 330 |
cd $gcmDIR/verification |
| 331 |
|
| 332 |
exps="`ls -d darwin_*`" |
| 333 |
|
| 334 |
echo ./testreport $options -optfile "$optfile" -odir "$odir" $mailfw -t "$exps" |
| 335 |
./testreport $options -optfile "$optfile" -odir "$odir" $mailfw -t "$exps" |
| 336 |
|
| 337 |
maildiff "$refdir/summary_darwin_$dirsfx.txt" "$odir" |
| 338 |
|
| 339 |
echo ../tools/do_tst_2+2 -o "$odir" $mailrs |
| 340 |
../tools/do_tst_2+2 -o "$odir" $mailrs |
| 341 |
|
| 342 |
maildiff2p2 "$refdir/summary_2+2_darwin_$dirsfx.txt" "$odir" |
| 343 |
|
| 344 |
for d in */build; do make -C $d Clean; done |
| 345 |
|
| 346 |
cd ../.. |
| 347 |
|
| 348 |
THEDATE=`date` |
| 349 |
echo '--------------------------------------------------------------------------------' |
| 350 |
echo 'End job '$THEDATE |
| 351 |
echo '--------------------------------------------------------------------------------' |
| 352 |
|
| 353 |
fi |
| 354 |
|
| 355 |
######################################################################## |
| 356 |
if test $dodarwin2mpi -ne 0; then |
| 357 |
|
| 358 |
sfx=mpi |
| 359 |
|
| 360 |
options="$defopts $trmpiopts $cleanopts" |
| 361 |
dirsfx=$pre-$sfx |
| 362 |
odir="$dirpre-darwin2-$sfx" |
| 363 |
|
| 364 |
echo '--------------------------------------------------------------------------------' |
| 365 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 366 |
|
| 367 |
gcmDIR="MITgcm_darwin2_$dirsfx" |
| 368 |
cpmodel2 $gcmDIR |
| 369 |
|
| 370 |
cd $gcmDIR/verification |
| 371 |
|
| 372 |
exps="`ls -d monod_* quota_*`" |
| 373 |
|
| 374 |
echo ./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw -t "$exps" |
| 375 |
./testreport $options -optfile "$mpioptfile" -command "$mpicommand" -odir "$odir" $mailfw -t "$exps" |
| 376 |
|
| 377 |
#maildiff "$refdir/summary_darwin2_$dirsfx.txt" "$odir" "darwin2 " |
| 378 |
maildiff "$refdir/summary_darwin2_$dirsfx.txt" "$odir" |
| 379 |
|
| 380 |
#echo ../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 381 |
#../tools/do_tst_2+2 -mpi -exe "$mpicommand" -o "$odir" $mailrs |
| 382 |
# |
| 383 |
#maildiff2p2 "$refdir/summary_2+2_$dirsfx.txt" "$odir" |
| 384 |
|
| 385 |
cd ../.. |
| 386 |
|
| 387 |
THEDATE=`date` |
| 388 |
echo '--------------------------------------------------------------------------------' |
| 389 |
echo "End $dirsfx $THEDATE" |
| 390 |
echo '--------------------------------------------------------------------------------' |
| 391 |
|
| 392 |
fi |
| 393 |
|
| 394 |
######################################################################## |
| 395 |
if test $dodarwin2 -ne 0; then |
| 396 |
|
| 397 |
sfx= |
| 398 |
|
| 399 |
options="$defopts" |
| 400 |
dirsfx=$pre |
| 401 |
odir="$dirpre-darwin2" |
| 402 |
|
| 403 |
echo '--------------------------------------------------------------------------------' |
| 404 |
echo "$sfx: MITgcm_$dirsfx $odir" |
| 405 |
|
| 406 |
gcmDIR="MITgcm_darwin2_$dirsfx" |
| 407 |
cpmodel2 $gcmDIR |
| 408 |
|
| 409 |
cd $gcmDIR/verification |
| 410 |
|
| 411 |
exps="`ls -d monod_* quota_*`" |
| 412 |
|
| 413 |
echo ./testreport $options -optfile "$optfile" -odir "$odir" $mailfw -t "$exps" |
| 414 |
./testreport $options -optfile "$optfile" -odir "$odir" $mailfw -t "$exps" |
| 415 |
|
| 416 |
maildiff "$refdir/summary_darwin2_$dirsfx.txt" "$odir" |
| 417 |
|
| 418 |
echo ../tools/do_tst_2+2 -o "$odir" $mailrs |
| 419 |
../tools/do_tst_2+2 -o "$odir" $mailrs |
| 420 |
|
| 421 |
maildiff2p2 "$refdir/summary_2+2_darwin2_$dirsfx.txt" "$odir" |
| 422 |
|
| 423 |
for d in */build; do make -C $d Clean; done |
| 424 |
|
| 425 |
cd ../.. |
| 426 |
|
| 427 |
fi |
| 428 |
|
| 429 |
THEDATE=`date` |
| 430 |
echo '================================================================================' |
| 431 |
echo 'End job '$THEDATE |
| 432 |
echo '********************************************************************************' |
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