#! /usr/bin/env bash # $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/example_scripts/csail/test_baudelaire,v 1.38 2018/01/29 21:59:01 jmc Exp $ # Test script for MITgcm that should work on most of the csail.mit.edu Linux machines. tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi if test $tst_grp != 'a' -a $tst_grp != 'b' ; then echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" exit 1 fi # defaults #export PATH="$PATH:/usr/local/bin" if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi #- to get case insensitive "ls" (and order of tested experiments) export LC_ALL="en_US.UTF-8" # Turn off stack limit for FIZHI & AD-tests ulimit -s unlimited # MPI test (for now, only with gfortran) export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 export MPI_INC_DIR=$MPI_GCC_DIR/include export PATH="$PATH:$MPI_GCC_DIR/bin" #- method to acces CVS: # export CVSROOT='/u/gcmpack' # export CVSROOT=':ext:@mitgcm.org:/u/gcmpack' # export CVS_RSH='ssh' ; cvs co -P MITgcm > /dev/null # cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P MITgcm > /dev/null cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' cmdCVS='cvs -d /u/gcmpack' # checkOut=2 : download new code ; # =3 : skip download but, if sepDir, use a new copy # =1 : update code (if no existing code -> swith to 2) # =0 : use existing code (if no existing code -> swith to 2) dInWeek=`date +%a` dNam=`hostname -s | tr '[:upper:]' '[:lower:]'` TESTDIR="/scratch/jmc/test_${dNam}" outDir="${dNam}-${tst_grp}" #outDir=`hostname -s` MC=13 sepDir=1 option= #tst_list='g7a adm mpa g77 gfo+rs mth mp2+rs mpi ifc' #if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi if test $tst_grp = 'a' ; then checkOut=2 tst_list='g7a mpa mth mp2+rs mpi oad' else checkOut=3 tst_list='adm g77 gfo+rs ifc' if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi fi echo " test: $outDir ; list='$tst_list'" #option="-nc" ; checkOut=1 #option="-q" ; checkOut=1 TODAY=`date +%d` tdir=$TESTDIR updFile='updated_code' ; today=`date +%Y%m%d` if test $checkOut != 2 ; then if test -e $tdir/MITgcm_today/CVS ; then echo $tdir/MITgcm_today/CVS 'exist' if test $sepDir = 0 -a $checkOut = 1 ; then #- remove date/lock-file: if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi echo -n "Update the MITgcm code using: $cmdCVS ..." cd $tdir/MITgcm_today $cmdCVS update -P -d echo " done" #- update date/lock-file: ( cd $tdir ; echo $today > $updFile sleep 2 ; ls -l $updFile ) fi else echo -n $tdir/MITgcm_today 'missing ; ' checkOut=2 fi fi if test $checkOut = 2 ; then if test -e $tdir ; then echo -n "Removing working copy: $tdir/MITgcm_today ..." test -e $tdir/MITgcm_today && rm -rf $tdir/MITgcm_today else echo -n "Creating a working dir: $tdir ..." mkdir $tdir fi echo " done" cd $tdir #- remove date/lock-file: if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi echo -n "Downloading the MITgcm code using: $cmdCVS ..." $cmdCVS co -P -d MITgcm_today MITgcm > /dev/null retVal=$? if test "x$retVal" != x0 ; then echo '' echo -n "'$cmdCVS co -P -d MITgcm_today MITgcm'" echo " on '"`hostname`"' fail (return val=$retVal) => exit" exit else echo " done" #echo "'$cmdCVS co -P -d MITgcm_today MITgcm' on '"`hostname`"' work" fi if test -d other_input ; then list_dirs=`(cd other_input ; ls 2> /dev/null )` echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:" for exd in $list_dirs ; do if test -d other_input/$exd/CVS ; then echo " $exd" ( cd other_input/$exd ; $cmdCVS update -P -d ) fi done echo " <-- update of 'other_input' dirs done" fi #- update date/lock-file: echo $today > $updFile ; sleep 2 ; ls -l $updFile else cd $tdir fi #------------------------------------------------------------------------ firstTst=`echo $tst_list | awk '{print $1}'` last_Tst=`echo $tst_list | awk '{print $NF}'` for tt in $tst_list do echo "================================================================" typ=`echo $tt | sed 's/+rs//'` #- define list of additional experiences to test: addExp='' if test $typ = 'mp2' -o $typ = 'ifc' ; then addExp="offline_cheapaml atm_gray" fi if test $typ = 'gfo' -o $typ = 'ifc' ; then addExp="$addExp global_oce_biogeo_bling" addExp="$addExp shelfice_remeshing" fi if test $typ = 'mpi' ; then addExp="$addExp global_oce_cs32" fi #- check day and time: curDay=`date +%d` ; curHour=`date +%H` if [ $curDay -ne $TODAY ] ; then date ; echo "day is over => skip test $typ" continue fi if [ $curHour -ge 18 ] ; then date ; echo "too late to run test $typ" continue fi if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then echo "using option='$option' prevent multi-tests => skip test $typ" continue fi #- clean-up old output files rm -f $tdir/output_${typ}* touch $tdir/output_$tt echo -n "-- Starting test: $tt at: " >> $tdir/output_$tt date >> $tdir/output_$tt echo " typ='$typ', addExp='$addExp'" >> $tdir/output_$tt if test $sepDir = 1 ; then new_dir="MITgcm_$typ" reUse=1 ; if [ $checkOut -ge 2 ] ; then reUse=0 ; fi if test -d $new_dir/CVS -a $reUse = 1 ; then cd $tdir/$new_dir if test $tt != $typ ; then ( cd verification ; ../tools/do_tst_2+2 -clean ) fi if test $checkOut = 1 ; then echo -n "Update the MITgcm code using: $cmdCVS ..." | tee -a $tdir/output_$tt $cmdCVS update -P -d | tee -a $tdir/output_$tt echo " done" | tee -a $tdir/output_$tt fi else if test -d prev ; then #-- save previous summary: oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` if test "x$oldS" != x ; then cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ touch -r $oldS prev/tr_out.$typ fi if test $tt != $typ ; then oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi fi fi echo " remove dir: $new_dir and make new one" >> $tdir/output_$tt test -e $new_dir && rm -rf $new_dir mkdir $new_dir #- before making a copy, check that code has been updated nCount=0; today=`date +%Y%m%d` updDate=0 ; test -f $updFile && updDate=`cat $updFile` while [ $today -gt $updDate ] ; do nCount=`expr $nCount + 1` if [ $nCount -gt 40 ] ; then echo " waiting too long (nCount=$nCount) for updated code" echo " today=$today , updDate=$updDate " ls -l $updFile exit fi sleep 60 updDate=0 ; test -f $updFile && updDate=`cat $updFile` done ls -l $updFile | tee -a $tdir/output_$tt echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt #----------------------------- if test -d MITgcm_today -a -d $new_dir ; then echo " copy main code from MITgcm_today to $new_dir" | tee -a $tdir/output_$tt cp -ra MITgcm_today/* $new_dir 2>&1 | tee -a $tdir/output_$tt else if test -d MITgcm_today ; then echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt else echo " missing dir MITgcm_today --> end test $tt" | tee -a $tdir/output_$tt fi continue fi echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt cd $tdir/$new_dir retVal=$? ( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt if test -d verification ; then echo " check: dir verification exist" | tee -a $tdir/output_$tt else echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt continue fi #-- download additional experience from Contrib: for exp2add in $addExp ; do echo " add dir: $exp2add (from Contrib:verification_other)" | tee -a $tdir/output_$tt ( cd verification ; $cmdCVS co -P -d $exp2add \ MITgcm_contrib/verification_other/$exp2add > /dev/null ) if test $exp2add = 'global_oce_cs32' ; then echo " link dir 'other_input/core2_cnyf' in here" | tee -a $tdir/output_$tt ( cd verification/${exp2add} ln -s ../../../other_input/core2_cnyf . ) fi if test $exp2add = 'shelfice_remeshing' ; then echo " link dir 'other_input/remeshing_code' to 'extra_code'" | tee -a $tdir/output_$tt ( cd verification/${exp2add} ln -s ../../../other_input/remeshing_code extra_code ) fi done fi else cd $tdir/MITgcm_today fi cd verification #-- set the testreport command: comm="./testreport" if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then comm="$comm -adm" elif test $typ = 'oad' ; then comm="$comm -oad" elif test $typ = 'tlm' ; then comm="$comm -tlm" elif test $typ = 'mth' -o $typ = 'mp2' ; then export GOMP_STACKSIZE=400m export OMP_NUM_THREADS=2 comm="$comm -mth" else comm="$comm -md cyrus-makedepend" fi comm="$comm -odir $outDir -a jm_c@mitgcm.org" #-- set the optfile (+ mpi & match-precision) MPI=0 case $typ in 'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; 'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; 'ifc') comm="$comm -devel" OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; 'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; 'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; *) OPTFILE= ;; esac #-- set MPI command: if test $MPI != 0 ; then if test $typ = 'mp2' ; then MPI=3 ; fi if test $typ = 'mpa' ; then EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" else EXE="mpirun -np TR_NPROC ./mitgcmuv" fi fi #-- set specific Env Vars: if test $typ = 'oad' ; then source ~jmc/mitgcm/bin/setenv_OpenAD.sh fi if test $typ = 'ifc' ; then source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 fi if test $typ = 'pgi' ; then #listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' export PGI=/srv/software/pgi/pgi-10.9 export PATH="$PATH:$PGI/linux86-64/10.9/bin" export LM_LICENSE_FILE=$PGI/license.dat fi if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut != 2 ; then #-- cleaning: echo "======================" echo "Cleaning test directories:" | tee -a $tdir/output_$tt cmdCLN="./testreport -clean" echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 echo "======================" echo "" | tee -a $tdir/output_$tt fi #-- run the testreport command: echo -n "Running testreport using:" | tee -a $tdir/output_$tt if test "x$OPTFILE" != x ; then comm="$comm -of=$OPTFILE" fi if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt comm="$comm -MPI $MPI -command \"\$EXE\"" fi if test "x$option" != x ; then comm="$comm $option" ; fi #if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi echo " \"eval $comm\"" | tee -a $tdir/output_$tt echo "======================" eval $comm >> $tdir/output_$tt 2>&1 sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt echo "" | tee -a $tdir/output_$tt #-- also test restart (test 2+2=4) if test $tt != $typ then echo "testing restart using:" | tee -a $tdir/output_$tt comm="../tools/do_tst_2+2 -o $outDir -a jm_c@mitgcm.org" if test $MPI = 0 ; then echo " \"$comm\"" | tee -a $tdir/output_$tt echo "======================" $comm >> $tdir/output_$tt 2>&1 else echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt echo "======================" $comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 fi echo ; cat tst_2+2_out.txt echo fi export OMP_NUM_THREADS=1 if test $sepDir = 0 ; then #-- cleaning: echo "======================" echo "Cleaning test directories:" | tee -a $tdir/output_$tt if test $tt != $typ ; then cmdCLN="../tools/do_tst_2+2 -clean" echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 fi if test $tt != $last_Tst ; then cmdCLN="./testreport -clean" echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt $cmdCLN >> $tdir/output_$tt 2>&1 fi echo "======================" echo fi cd $tdir done