| 1 |
#! /usr/bin/env bash |
| 2 |
|
| 3 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/csail/test_baudelaire,v 1.35 2017/05/13 16:53:46 jmc Exp $ |
| 4 |
|
| 5 |
# Test script for MITgcm that should work on most of the csail.mit.edu Linux machines. |
| 6 |
|
| 7 |
tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi |
| 8 |
if test $tst_grp != 'a' -a $tst_grp != 'b' ; then |
| 9 |
echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" |
| 10 |
exit 1 |
| 11 |
fi |
| 12 |
|
| 13 |
# defaults |
| 14 |
#export PATH="$PATH:/usr/local/bin" |
| 15 |
if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi |
| 16 |
#- to get case insensitive "ls" (and order of tested experiments) |
| 17 |
export LC_ALL="en_US.UTF-8" |
| 18 |
# Turn off stack limit for FIZHI & AD-tests |
| 19 |
ulimit -s unlimited |
| 20 |
# MPI test (for now, only with gfortran) |
| 21 |
export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 |
| 22 |
export MPI_INC_DIR=$MPI_GCC_DIR/include |
| 23 |
export PATH="$PATH:$MPI_GCC_DIR/bin" |
| 24 |
|
| 25 |
#- method to acces CVS: |
| 26 |
# export CVSROOT='/u/gcmpack' |
| 27 |
# export CVSROOT=':ext:@mitgcm.org:/u/gcmpack' |
| 28 |
# export CVS_RSH='ssh' ; cvs co -P MITgcm > /dev/null |
| 29 |
# cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P MITgcm > /dev/null |
| 30 |
cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 31 |
cmdCVS='cvs -d /u/gcmpack' |
| 32 |
|
| 33 |
# checkOut=2 : download new code ; |
| 34 |
# =3 : skip download but, if sepDir, use a new copy |
| 35 |
# =1 : update code (if no existing code -> swith to 2) |
| 36 |
# =0 : use existing code (if no existing code -> swith to 2) |
| 37 |
dInWeek=`date +%a` |
| 38 |
|
| 39 |
dNam=`hostname -s | tr '[:upper:]' '[:lower:]'` |
| 40 |
TESTDIR="/scratch/jmc/test_${dNam}" |
| 41 |
outDir="${dNam}-${tst_grp}" |
| 42 |
#outDir=`hostname -s` |
| 43 |
MC=13 |
| 44 |
sepDir=1 |
| 45 |
option= |
| 46 |
|
| 47 |
#tst_list='g7a adm mpa g77 gfo+rs mth mp2+rs mpi ifc' |
| 48 |
#if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi |
| 49 |
if test $tst_grp = 'a' ; then |
| 50 |
checkOut=2 |
| 51 |
tst_list='g7a mpa mth mp2+rs mpi oad' |
| 52 |
else |
| 53 |
checkOut=3 |
| 54 |
tst_list='adm g77 gfo+rs ifc' |
| 55 |
if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi |
| 56 |
fi |
| 57 |
echo " test: $outDir ; list='$tst_list'" |
| 58 |
|
| 59 |
#option="-nc" ; checkOut=1 |
| 60 |
#option="-q" ; checkOut=1 |
| 61 |
|
| 62 |
TODAY=`date +%d` |
| 63 |
tdir=$TESTDIR |
| 64 |
updFile='updated_code' ; today=`date +%Y%m%d` |
| 65 |
if test $checkOut != 2 ; then |
| 66 |
if test -e $tdir/MITgcm/CVS ; then |
| 67 |
echo $tdir/MITgcm/CVS 'exist' |
| 68 |
if test $sepDir = 0 -a $checkOut = 1 ; then |
| 69 |
#- remove date/lock-file: |
| 70 |
if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi |
| 71 |
echo -n "Update the MITgcm code using: $cmdCVS ..." |
| 72 |
cd $tdir/MITgcm |
| 73 |
$cmdCVS update -P -d |
| 74 |
echo " done" |
| 75 |
#- update date/lock-file: |
| 76 |
( cd $tdir ; echo $today > $updFile |
| 77 |
sleep 2 ; ls -l $updFile ) |
| 78 |
fi |
| 79 |
else |
| 80 |
echo -n $tdir/MITgcm 'missing ; ' |
| 81 |
checkOut=2 |
| 82 |
fi |
| 83 |
fi |
| 84 |
if test $checkOut = 2 ; then |
| 85 |
if test -e $tdir ; then |
| 86 |
echo -n "Removing working copy: $tdir/MITgcm ..." |
| 87 |
test -e $tdir/MITgcm && rm -rf $tdir/MITgcm |
| 88 |
else |
| 89 |
echo -n "Creating a working dir: $tdir ..." |
| 90 |
mkdir $tdir |
| 91 |
fi |
| 92 |
echo " done" |
| 93 |
cd $tdir |
| 94 |
#- remove date/lock-file: |
| 95 |
if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi |
| 96 |
echo -n "Downloading the MITgcm code using: $cmdCVS ..." |
| 97 |
$cmdCVS co -P MITgcm > /dev/null |
| 98 |
echo " done" |
| 99 |
if test -d other_input ; then |
| 100 |
list_dirs=`(cd other_input ; ls 2> /dev/null )` |
| 101 |
echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:" |
| 102 |
for exd in $list_dirs ; do |
| 103 |
if test -d other_input/$exd/CVS ; then echo " $exd" |
| 104 |
( cd other_input/$exd ; $cmdCVS update -P -d ) |
| 105 |
fi |
| 106 |
done |
| 107 |
echo " <-- update of 'other_input' dirs done" |
| 108 |
fi |
| 109 |
#- update date/lock-file: |
| 110 |
echo $today > $updFile ; sleep 2 ; ls -l $updFile |
| 111 |
else |
| 112 |
cd $tdir |
| 113 |
fi |
| 114 |
|
| 115 |
#------------------------------------------------------------------------ |
| 116 |
|
| 117 |
firstTst=`echo $tst_list | awk '{print $1}'` |
| 118 |
last_Tst=`echo $tst_list | awk '{print $NF}'` |
| 119 |
for tt in $tst_list |
| 120 |
do |
| 121 |
|
| 122 |
echo "================================================================" |
| 123 |
typ=`echo $tt | sed 's/+rs//'` |
| 124 |
#- define list of additional experiences to test: |
| 125 |
addExp='' |
| 126 |
if test $typ = 'mp2' -o $typ = 'ifc' ; then |
| 127 |
addExp="offline_cheapaml atm_gray" |
| 128 |
fi |
| 129 |
if test $typ = 'gfo' -o $typ = 'ifc' ; then |
| 130 |
addExp="$addExp global_oce_biogeo_bling" |
| 131 |
addExp="$addExp shelfice_remeshing" |
| 132 |
fi |
| 133 |
if test $typ = 'mpi' ; then |
| 134 |
addExp="$addExp global_oce_cs32" |
| 135 |
fi |
| 136 |
#- check day and time: |
| 137 |
curDay=`date +%d` ; curHour=`date +%H` |
| 138 |
if [ $curDay -ne $TODAY ] ; then |
| 139 |
date ; echo "day is over => skip test $typ" |
| 140 |
continue |
| 141 |
fi |
| 142 |
if [ $curHour -ge 18 ] ; then |
| 143 |
date ; echo "too late to run test $typ" |
| 144 |
continue |
| 145 |
fi |
| 146 |
if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then |
| 147 |
echo "using option='$option' prevent multi-tests => skip test $typ" |
| 148 |
continue |
| 149 |
fi |
| 150 |
#- clean-up old output files |
| 151 |
rm -f $tdir/output_${typ}* |
| 152 |
touch $tdir/output_$tt |
| 153 |
if test $sepDir = 1 ; then |
| 154 |
new_dir="MITgcm_$typ" |
| 155 |
reUse=1 ; if [ $checkOut -ge 2 ] ; then reUse=0 ; fi |
| 156 |
if test -d $new_dir/CVS -a $reUse = 1 ; then |
| 157 |
cd $tdir/$new_dir |
| 158 |
if test $tt != $typ ; then |
| 159 |
( cd verification ; ../tools/do_tst_2+2 -clean ) |
| 160 |
fi |
| 161 |
if test $checkOut = 1 ; then |
| 162 |
echo -n "Update the MITgcm code using: $cmdCVS ..." |
| 163 |
$cmdCVS update -P -d |
| 164 |
echo " done" |
| 165 |
fi |
| 166 |
else |
| 167 |
if test -d prev ; then |
| 168 |
#-- save previous summary: |
| 169 |
oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 170 |
if test "x$oldS" != x ; then |
| 171 |
cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ |
| 172 |
touch -r $oldS prev/tr_out.$typ |
| 173 |
fi |
| 174 |
if test $tt != $typ ; then |
| 175 |
oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 176 |
if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi |
| 177 |
fi |
| 178 |
fi |
| 179 |
test -e $new_dir && rm -rf $new_dir |
| 180 |
mkdir $new_dir |
| 181 |
#- before making a copy, check that code has been updated |
| 182 |
nCount=0; today=`date +%Y%m%d` |
| 183 |
updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
| 184 |
while [ $today -gt $updDate ] ; do |
| 185 |
nCount=`expr $nCount + 1` |
| 186 |
if [ $nCount -gt 40 ] ; then |
| 187 |
echo " waiting too long (nCount=$nCount) for updated code" |
| 188 |
echo " today=$today , updDate=$updDate " |
| 189 |
ls -l $updFile |
| 190 |
exit |
| 191 |
fi |
| 192 |
sleep 60 |
| 193 |
updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
| 194 |
done |
| 195 |
ls -l $updFile | tee -a $tdir/output_$tt |
| 196 |
echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt |
| 197 |
#----------------------------- |
| 198 |
if test -d MITgcm -a -d $new_dir ; then |
| 199 |
echo " copy main code from MITgcm to $new_dir" | tee -a $tdir/output_$tt |
| 200 |
cp -ra MITgcm/* $new_dir 2>&1 | tee -a $tdir/output_$tt |
| 201 |
else |
| 202 |
if test -d MITgcm ; then |
| 203 |
echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt |
| 204 |
else |
| 205 |
echo " missing dir MITgcm --> end test $tt" | tee -a $tdir/output_$tt |
| 206 |
fi |
| 207 |
continue |
| 208 |
fi |
| 209 |
echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt |
| 210 |
cd $tdir/$new_dir |
| 211 |
retVal=$? |
| 212 |
( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt |
| 213 |
if test -d verification ; then |
| 214 |
echo " check: dir verification exist" | tee -a $tdir/output_$tt |
| 215 |
else |
| 216 |
echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt |
| 217 |
continue |
| 218 |
fi |
| 219 |
#-- download additional experience from Contrib: |
| 220 |
for exp2add in $addExp ; do |
| 221 |
echo " add dir: $exp2add (from Contrib:verification_other)" |
| 222 |
( cd verification ; $cmdCVS co -P -d $exp2add \ |
| 223 |
MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
| 224 |
if test $exp2add = 'global_oce_cs32' ; then |
| 225 |
echo " link dir 'other_input/core2_cnyf' in here" |
| 226 |
( cd verification/${exp2add} |
| 227 |
ln -s ../../../other_input/core2_cnyf . ) |
| 228 |
fi |
| 229 |
if test $exp2add = 'shelfice_remeshing' ; then |
| 230 |
echo " link dir 'other_input/remeshing_code' to 'extra_code'" |
| 231 |
( cd verification/${exp2add} |
| 232 |
ln -s ../../../other_input/remeshing_code extra_code ) |
| 233 |
fi |
| 234 |
done |
| 235 |
fi |
| 236 |
else |
| 237 |
cd $tdir/MITgcm |
| 238 |
fi |
| 239 |
cd verification |
| 240 |
|
| 241 |
#-- set the testreport command: |
| 242 |
comm="./testreport" |
| 243 |
if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then |
| 244 |
comm="$comm -adm" |
| 245 |
elif test $typ = 'oad' ; then |
| 246 |
comm="$comm -oad" |
| 247 |
elif test $typ = 'tlm' ; then |
| 248 |
comm="$comm -tlm" |
| 249 |
elif test $typ = 'mth' -o $typ = 'mp2' ; then |
| 250 |
export GOMP_STACKSIZE=400m |
| 251 |
export OMP_NUM_THREADS=2 |
| 252 |
comm="$comm -mth" |
| 253 |
else |
| 254 |
comm="$comm -md cyrus-makedepend" |
| 255 |
fi |
| 256 |
comm="$comm -odir $outDir -a jmc@dev.mitgcm.org" |
| 257 |
#-- set the optfile (+ mpi & match-precision) |
| 258 |
MPI=0 |
| 259 |
case $typ in |
| 260 |
'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; |
| 261 |
'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" |
| 262 |
OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 263 |
'ifc') comm="$comm -devel" |
| 264 |
OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; |
| 265 |
'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; |
| 266 |
'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 |
| 267 |
OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 268 |
*) OPTFILE= ;; |
| 269 |
esac |
| 270 |
#-- set MPI command: |
| 271 |
if test $MPI != 0 ; then |
| 272 |
if test $typ = 'mp2' ; then MPI=3 ; fi |
| 273 |
if test $typ = 'mpa' ; then |
| 274 |
EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" |
| 275 |
else |
| 276 |
EXE="mpirun -np TR_NPROC ./mitgcmuv" |
| 277 |
fi |
| 278 |
fi |
| 279 |
|
| 280 |
#-- set specific Env Vars: |
| 281 |
if test $typ = 'oad' ; then |
| 282 |
source ~jmc/mitgcm/bin/setenv_OpenAD.sh |
| 283 |
fi |
| 284 |
if test $typ = 'ifc' ; then |
| 285 |
source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 |
| 286 |
fi |
| 287 |
if test $typ = 'pgi' ; then |
| 288 |
#listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' |
| 289 |
export PGI=/srv/software/pgi/pgi-10.9 |
| 290 |
export PATH="$PATH:$PGI/linux86-64/10.9/bin" |
| 291 |
export LM_LICENSE_FILE=$PGI/license.dat |
| 292 |
fi |
| 293 |
|
| 294 |
if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut != 2 ; then |
| 295 |
#-- cleaning: |
| 296 |
echo "======================" |
| 297 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 298 |
cmdCLN="./testreport -clean" |
| 299 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 300 |
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 301 |
echo "======================" |
| 302 |
echo "" | tee -a $tdir/output_$tt |
| 303 |
fi |
| 304 |
|
| 305 |
#-- run the testreport command: |
| 306 |
echo -n "Running testreport using:" | tee -a $tdir/output_$tt |
| 307 |
if test "x$OPTFILE" != x ; then |
| 308 |
comm="$comm -of=$OPTFILE" |
| 309 |
fi |
| 310 |
if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt |
| 311 |
else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt |
| 312 |
comm="$comm -MPI $MPI -command \"\$EXE\"" |
| 313 |
fi |
| 314 |
if test "x$option" != x ; then comm="$comm $option" ; fi |
| 315 |
#if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi |
| 316 |
echo " \"eval $comm\"" | tee -a $tdir/output_$tt |
| 317 |
echo "======================" |
| 318 |
eval $comm >> $tdir/output_$tt 2>&1 |
| 319 |
sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt |
| 320 |
echo "" | tee -a $tdir/output_$tt |
| 321 |
|
| 322 |
#-- also test restart (test 2+2=4) |
| 323 |
if test $tt != $typ |
| 324 |
then |
| 325 |
echo "testing restart using:" | tee -a $tdir/output_$tt |
| 326 |
comm="../tools/do_tst_2+2 -o $outDir -a jmc@dev.mitgcm.org" |
| 327 |
if test $MPI = 0 ; then |
| 328 |
echo " \"$comm\"" | tee -a $tdir/output_$tt |
| 329 |
echo "======================" |
| 330 |
$comm >> $tdir/output_$tt 2>&1 |
| 331 |
else |
| 332 |
echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt |
| 333 |
echo "======================" |
| 334 |
$comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 |
| 335 |
fi |
| 336 |
echo ; cat tst_2+2_out.txt |
| 337 |
echo |
| 338 |
fi |
| 339 |
export OMP_NUM_THREADS=1 |
| 340 |
|
| 341 |
if test $sepDir = 0 ; then |
| 342 |
#-- cleaning: |
| 343 |
echo "======================" |
| 344 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 345 |
if test $tt != $typ ; then |
| 346 |
cmdCLN="../tools/do_tst_2+2 -clean" |
| 347 |
echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt |
| 348 |
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 349 |
fi |
| 350 |
if test $tt != $last_Tst ; then |
| 351 |
cmdCLN="./testreport -clean" |
| 352 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 353 |
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 354 |
fi |
| 355 |
echo "======================" |
| 356 |
echo |
| 357 |
fi |
| 358 |
cd $tdir |
| 359 |
|
| 360 |
done |
Parent Directory
| 
Revision Log
| 
Revision Graph