1 |
jmc |
1.1 |
#! /usr/bin/env bash |
2 |
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3 |
jmc |
1.34 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/csail/test_baudelaire,v 1.33 2017/04/22 14:52:51 jmc Exp $ |
4 |
jmc |
1.1 |
|
5 |
jmc |
1.23 |
# Test script for MITgcm that should work on most of the csail.mit.edu Linux machines. |
6 |
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7 |
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tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi |
8 |
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if test $tst_grp != 'a' -a $tst_grp != 'b' ; then |
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echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" |
10 |
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exit 1 |
11 |
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fi |
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jmc |
1.1 |
|
13 |
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# defaults |
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#export PATH="$PATH:/usr/local/bin" |
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if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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# Turn off stack limit for FIZHI & AD-tests |
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ulimit -s unlimited |
20 |
jmc |
1.4 |
# MPI test (for now, only with gfortran) |
21 |
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export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 |
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export MPI_INC_DIR=$MPI_GCC_DIR/include |
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export PATH="$PATH:$MPI_GCC_DIR/bin" |
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jmc |
1.1 |
|
25 |
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#- method to acces CVS: |
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# export CVSROOT='/u/gcmpack' |
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# export CVSROOT=':ext:@mitgcm.org:/u/gcmpack' |
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# export CVS_RSH='ssh' ; cvs co -P MITgcm > /dev/null |
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# cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P MITgcm > /dev/null |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' |
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cmdCVS='cvs -d /u/gcmpack' |
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|
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jmc |
1.19 |
# checkOut=2 : download new code ; |
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jmc |
1.20 |
# =3 : skip download but, if sepDir, use a new copy |
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jmc |
1.19 |
# =1 : update code (if no existing code -> swith to 2) |
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# =0 : use existing code (if no existing code -> swith to 2) |
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jmc |
1.11 |
dInWeek=`date +%a` |
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jmc |
1.34 |
|
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dNam=`hostname -s | tr '[:upper:]' '[:lower:]'` |
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TESTDIR="/scratch/jmc/test_${dName}" |
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jmc |
1.20 |
outDir=`hostname -s` |
42 |
jmc |
1.3 |
MC=13 |
43 |
jmc |
1.1 |
sepDir=1 |
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option= |
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jmc |
1.34 |
|
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jmc |
1.20 |
#tst_list='g7a adm mpa g77 gfo+rs mth mp2+rs mpi ifc' |
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#if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi |
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jmc |
1.23 |
if test $tst_grp = 'a' ; then |
49 |
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checkOut=2 |
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tst_list='g7a mpa mth mp2+rs mpi oad' |
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else |
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checkOut=3 |
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tst_list='adm g77 gfo+rs ifc' |
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if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi |
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fi |
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echo " test: $outDir ; list='$tst_list'" |
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jmc |
1.1 |
|
58 |
jmc |
1.19 |
#option="-nc" ; checkOut=1 |
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#option="-q" ; checkOut=1 |
60 |
jmc |
1.1 |
|
61 |
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TODAY=`date +%d` |
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tdir=$TESTDIR |
63 |
jmc |
1.34 |
updFile='updated_code' ; today=`date +%Y%m%d` |
64 |
jmc |
1.19 |
if test $checkOut != 2 ; then |
65 |
jmc |
1.7 |
if test -e $tdir/MITgcm/CVS ; then |
66 |
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echo $tdir/MITgcm/CVS 'exist' |
67 |
jmc |
1.19 |
if test $sepDir = 0 -a $checkOut = 1 ; then |
68 |
jmc |
1.34 |
#- remove date/lock-file: |
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if test -f $tdir/$updFile ; then rm -f $tdir/$updFile ; sleep 2 ; fi |
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jmc |
1.15 |
echo -n "Update the MITgcm code using: $cmdCVS ..." |
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cd $tdir/MITgcm |
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jmc |
1.7 |
$cmdCVS update -P -d |
73 |
jmc |
1.15 |
echo " done" |
74 |
jmc |
1.34 |
#- update date/lock-file: |
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( cd $tdir ; echo $today > $updFile |
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sleep 2 ; ls -l $updFile ) |
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jmc |
1.7 |
fi |
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jmc |
1.1 |
else |
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jmc |
1.7 |
echo -n $tdir/MITgcm 'missing ; ' |
80 |
jmc |
1.19 |
checkOut=2 |
81 |
jmc |
1.1 |
fi |
82 |
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fi |
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jmc |
1.19 |
if test $checkOut = 2 ; then |
84 |
jmc |
1.1 |
if test -e $tdir ; then |
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echo -n "Removing working copy: $tdir/MITgcm ..." |
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test -e $tdir/MITgcm && rm -rf $tdir/MITgcm |
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else |
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echo -n "Creating a working dir: $tdir ..." |
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mkdir $tdir |
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fi |
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echo " done" |
92 |
jmc |
1.34 |
cd $tdir |
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#- remove date/lock-file: |
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if test -f $updFile ; then rm -f $updFile ; sleep 2 ; fi |
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jmc |
1.1 |
echo -n "Downloading the MITgcm code using: $cmdCVS ..." |
96 |
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$cmdCVS co -P MITgcm > /dev/null |
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echo " done" |
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jmc |
1.28 |
if test -d other_input ; then |
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list_dirs=`(cd other_input ; ls 2> /dev/null )` |
100 |
jmc |
1.29 |
echo "Updating ( $cmdCVS update -P -d ) 'other_input' extra dirs:" |
101 |
jmc |
1.28 |
for exd in $list_dirs ; do |
102 |
jmc |
1.29 |
if test -d other_input/$exd/CVS ; then echo " $exd" |
103 |
jmc |
1.28 |
( cd other_input/$exd ; $cmdCVS update -P -d ) |
104 |
jmc |
1.29 |
fi |
105 |
jmc |
1.28 |
done |
106 |
jmc |
1.29 |
echo " <-- update of 'other_input' dirs done" |
107 |
jmc |
1.28 |
fi |
108 |
jmc |
1.34 |
#- update date/lock-file: |
109 |
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echo $today > $updFile ; sleep 2 ; ls -l $updFile |
110 |
jmc |
1.1 |
else |
111 |
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cd $tdir |
112 |
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fi |
113 |
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114 |
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#------------------------------------------------------------------------ |
115 |
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116 |
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firstTst=`echo $tst_list | awk '{print $1}'` |
117 |
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last_Tst=`echo $tst_list | awk '{print $NF}'` |
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for tt in $tst_list |
119 |
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do |
120 |
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121 |
jmc |
1.5 |
echo "================================================================" |
122 |
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typ=`echo $tt | sed 's/+rs//'` |
123 |
jmc |
1.22 |
#- define list of additional experiences to test: |
124 |
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addExp='' |
125 |
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if test $typ = 'mp2' -o $typ = 'ifc' ; then |
126 |
jmc |
1.24 |
addExp="offline_cheapaml atm_gray" |
127 |
|
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fi |
128 |
jmc |
1.27 |
if test $typ = 'gfo' -o $typ = 'ifc' ; then |
129 |
jmc |
1.26 |
addExp="$addExp global_oce_biogeo_bling" |
130 |
jmc |
1.29 |
addExp="$addExp shelfice_remeshing" |
131 |
jmc |
1.26 |
fi |
132 |
jmc |
1.27 |
if test $typ = 'mpi' ; then |
133 |
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addExp="$addExp global_oce_cs32" |
134 |
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fi |
135 |
jmc |
1.5 |
#- check day and time: |
136 |
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curDay=`date +%d` ; curHour=`date +%H` |
137 |
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if [ $curDay -ne $TODAY ] ; then |
138 |
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date ; echo "day is over => skip test $typ" |
139 |
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continue |
140 |
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fi |
141 |
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if [ $curHour -ge 18 ] ; then |
142 |
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date ; echo "too late to run test $typ" |
143 |
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continue |
144 |
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fi |
145 |
jmc |
1.19 |
if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then |
146 |
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echo "using option='$option' prevent multi-tests => skip test $typ" |
147 |
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continue |
148 |
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fi |
149 |
jmc |
1.5 |
#- clean-up old output files |
150 |
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rm -f $tdir/output_${typ}* |
151 |
jmc |
1.12 |
touch $tdir/output_$tt |
152 |
jmc |
1.5 |
if test $sepDir = 1 ; then |
153 |
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new_dir="MITgcm_$typ" |
154 |
jmc |
1.20 |
reUse=1 ; if [ $checkOut -ge 2 ] ; then reUse=0 ; fi |
155 |
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if test -d $new_dir/CVS -a $reUse = 1 ; then |
156 |
jmc |
1.34 |
cd $tdir/$new_dir |
157 |
jmc |
1.14 |
if test $tt != $typ ; then |
158 |
|
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( cd verification ; ../tools/do_tst_2+2 -clean ) |
159 |
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fi |
160 |
jmc |
1.19 |
if test $checkOut = 1 ; then |
161 |
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echo -n "Update the MITgcm code using: $cmdCVS ..." |
162 |
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$cmdCVS update -P -d |
163 |
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echo " done" |
164 |
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fi |
165 |
jmc |
1.5 |
else |
166 |
jmc |
1.21 |
if test -d prev ; then |
167 |
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#-- save previous summary: |
168 |
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oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` |
169 |
jmc |
1.33 |
if test "x$oldS" != x ; then |
170 |
|
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cat $oldS | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > prev/tr_out.$typ |
171 |
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touch -r $oldS prev/tr_out.$typ |
172 |
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fi |
173 |
jmc |
1.21 |
if test $tt != $typ ; then |
174 |
|
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oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` |
175 |
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if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi |
176 |
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fi |
177 |
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fi |
178 |
jmc |
1.5 |
test -e $new_dir && rm -rf $new_dir |
179 |
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mkdir $new_dir |
180 |
jmc |
1.34 |
#- before making a copy, check that code has been updated |
181 |
|
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nCount=0; today=`date +%Y%m%d` |
182 |
|
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
183 |
|
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while [ $today -gt $updDate ] ; do |
184 |
|
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nCount=`expr $nCount + 1` |
185 |
|
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if [ $nCount -gt 40 ] ; then |
186 |
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echo " waiting too long (nCount=$nCount) for updated code" |
187 |
|
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echo " today=$today , updDate=$updDate " |
188 |
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ls -l $updFile |
189 |
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exit |
190 |
|
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fi |
191 |
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sleep 60 |
192 |
|
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updDate=0 ; test -f $updFile && updDate=`cat $updFile` |
193 |
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done |
194 |
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ls -l $updFile | tee -a $tdir/output_$tt |
195 |
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echo " waited nCount=$nCount for updated code ($updDate) to copy" | tee -a $tdir/output_$tt |
196 |
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#----------------------------- |
197 |
|
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if test -d MITgcm -a -d $new_dir ; then |
198 |
|
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echo " copy main code from MITgcm to $new_dir" | tee -a $tdir/output_$tt |
199 |
|
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cp -ra MITgcm/* $new_dir 2>&1 | tee -a $tdir/output_$tt |
200 |
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else |
201 |
|
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if test -d MITgcm ; then |
202 |
|
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echo " missing dir $new_dir --> end test $tt" | tee -a $tdir/output_$tt |
203 |
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else |
204 |
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echo " missing dir MITgcm --> end test $tt" | tee -a $tdir/output_$tt |
205 |
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fi |
206 |
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continue |
207 |
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fi |
208 |
|
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echo -n " cd $tdir/$new_dir " | tee -a $tdir/output_$tt |
209 |
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cd $tdir/$new_dir |
210 |
|
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retVal=$? |
211 |
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( echo "(retVal= $retVal )" ; pwd ) | tee -a $tdir/output_$tt |
212 |
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if test -d verification ; then |
213 |
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echo " check: dir verification exist" | tee -a $tdir/output_$tt |
214 |
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else |
215 |
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echo " missing dir verification --> end test $tt" | tee -a $tdir/output_$tt |
216 |
|
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continue |
217 |
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fi |
218 |
jmc |
1.22 |
#-- download additional experience from Contrib: |
219 |
|
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for exp2add in $addExp ; do |
220 |
|
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echo " add dir: $exp2add (from Contrib:verification_other)" |
221 |
|
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( cd verification ; $cmdCVS co -P -d $exp2add \ |
222 |
|
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MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
223 |
jmc |
1.27 |
if test $exp2add = 'global_oce_cs32' ; then |
224 |
jmc |
1.30 |
echo " link dir 'other_input/core2_cnyf' in here" |
225 |
|
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( cd verification/${exp2add} |
226 |
|
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ln -s ../../../other_input/core2_cnyf . ) |
227 |
jmc |
1.27 |
fi |
228 |
jmc |
1.28 |
if test $exp2add = 'shelfice_remeshing' ; then |
229 |
|
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echo " link dir 'other_input/remeshing_code' to 'extra_code'" |
230 |
|
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( cd verification/${exp2add} |
231 |
|
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ln -s ../../../other_input/remeshing_code extra_code ) |
232 |
|
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fi |
233 |
jmc |
1.22 |
done |
234 |
jmc |
1.5 |
fi |
235 |
jmc |
1.1 |
else |
236 |
jmc |
1.34 |
cd $tdir/MITgcm |
237 |
jmc |
1.1 |
fi |
238 |
jmc |
1.5 |
cd verification |
239 |
jmc |
1.1 |
|
240 |
jmc |
1.5 |
#-- set the testreport command: |
241 |
jmc |
1.7 |
comm="./testreport" |
242 |
|
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if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then |
243 |
jmc |
1.12 |
comm="$comm -adm" |
244 |
jmc |
1.18 |
elif test $typ = 'oad' ; then |
245 |
|
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comm="$comm -oad" |
246 |
jmc |
1.11 |
elif test $typ = 'tlm' ; then |
247 |
jmc |
1.12 |
comm="$comm -tlm" |
248 |
jmc |
1.5 |
elif test $typ = 'mth' -o $typ = 'mp2' ; then |
249 |
jmc |
1.4 |
export GOMP_STACKSIZE=400m |
250 |
jmc |
1.5 |
export OMP_NUM_THREADS=2 |
251 |
|
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comm="$comm -mth" |
252 |
jmc |
1.17 |
else |
253 |
|
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comm="$comm -md cyrus-makedepend" |
254 |
jmc |
1.5 |
fi |
255 |
jmc |
1.32 |
comm="$comm -odir $outDir -a jmc@dev.mitgcm.org" |
256 |
jmc |
1.5 |
#-- set the optfile (+ mpi & match-precision) |
257 |
|
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MPI=0 |
258 |
|
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case $typ in |
259 |
|
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'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; |
260 |
jmc |
1.18 |
'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" |
261 |
jmc |
1.11 |
OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
262 |
jmc |
1.20 |
'ifc') comm="$comm -devel" |
263 |
|
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OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; |
264 |
jmc |
1.5 |
'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; |
265 |
jmc |
1.11 |
'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 |
266 |
|
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
267 |
jmc |
1.5 |
*) OPTFILE= ;; |
268 |
|
|
esac |
269 |
|
|
#-- set MPI command: |
270 |
jmc |
1.8 |
if test $MPI != 0 ; then |
271 |
|
|
if test $typ = 'mp2' ; then MPI=3 ; fi |
272 |
jmc |
1.7 |
if test $typ = 'mpa' ; then |
273 |
jmc |
1.6 |
EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" |
274 |
jmc |
1.5 |
else |
275 |
jmc |
1.6 |
EXE="mpirun -np TR_NPROC ./mitgcmuv" |
276 |
jmc |
1.5 |
fi |
277 |
|
|
fi |
278 |
jmc |
1.1 |
|
279 |
jmc |
1.7 |
#-- set specific Env Vars: |
280 |
jmc |
1.18 |
if test $typ = 'oad' ; then |
281 |
|
|
source ~jmc/mitgcm/bin/setenv_OpenAD.sh |
282 |
|
|
fi |
283 |
jmc |
1.7 |
if test $typ = 'ifc' ; then |
284 |
|
|
source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 |
285 |
|
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fi |
286 |
|
|
if test $typ = 'pgi' ; then |
287 |
jmc |
1.8 |
#listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' |
288 |
jmc |
1.7 |
export PGI=/srv/software/pgi/pgi-10.9 |
289 |
|
|
export PATH="$PATH:$PGI/linux86-64/10.9/bin" |
290 |
|
|
export LM_LICENSE_FILE=$PGI/license.dat |
291 |
|
|
fi |
292 |
|
|
|
293 |
jmc |
1.19 |
if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut != 2 ; then |
294 |
jmc |
1.1 |
#-- cleaning: |
295 |
jmc |
1.5 |
echo "======================" |
296 |
jmc |
1.12 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
297 |
jmc |
1.1 |
cmdCLN="./testreport -clean" |
298 |
jmc |
1.12 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
299 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
300 |
jmc |
1.5 |
echo "======================" |
301 |
jmc |
1.12 |
echo "" | tee -a $tdir/output_$tt |
302 |
jmc |
1.1 |
fi |
303 |
|
|
|
304 |
jmc |
1.5 |
#-- run the testreport command: |
305 |
jmc |
1.12 |
echo -n "Running testreport using:" | tee -a $tdir/output_$tt |
306 |
jmc |
1.1 |
if test "x$OPTFILE" != x ; then |
307 |
|
|
comm="$comm -of=$OPTFILE" |
308 |
|
|
fi |
309 |
jmc |
1.12 |
if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt |
310 |
|
|
else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt |
311 |
jmc |
1.8 |
comm="$comm -MPI $MPI -command \"\$EXE\"" |
312 |
|
|
fi |
313 |
jmc |
1.1 |
if test "x$option" != x ; then comm="$comm $option" ; fi |
314 |
jmc |
1.8 |
#if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi |
315 |
jmc |
1.12 |
echo " \"eval $comm\"" | tee -a $tdir/output_$tt |
316 |
jmc |
1.1 |
echo "======================" |
317 |
jmc |
1.12 |
eval $comm >> $tdir/output_$tt 2>&1 |
318 |
|
|
sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt |
319 |
|
|
echo "" | tee -a $tdir/output_$tt |
320 |
jmc |
1.1 |
|
321 |
jmc |
1.5 |
#-- also test restart (test 2+2=4) |
322 |
|
|
if test $tt != $typ |
323 |
|
|
then |
324 |
jmc |
1.12 |
echo "testing restart using:" | tee -a $tdir/output_$tt |
325 |
jmc |
1.32 |
comm="../tools/do_tst_2+2 -o $outDir -a jmc@dev.mitgcm.org" |
326 |
jmc |
1.8 |
if test $MPI = 0 ; then |
327 |
jmc |
1.12 |
echo " \"$comm\"" | tee -a $tdir/output_$tt |
328 |
jmc |
1.8 |
echo "======================" |
329 |
jmc |
1.12 |
$comm >> $tdir/output_$tt 2>&1 |
330 |
jmc |
1.8 |
else |
331 |
jmc |
1.12 |
echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt |
332 |
jmc |
1.5 |
echo "======================" |
333 |
jmc |
1.12 |
$comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 |
334 |
jmc |
1.5 |
fi |
335 |
|
|
echo ; cat tst_2+2_out.txt |
336 |
|
|
echo |
337 |
jmc |
1.1 |
fi |
338 |
jmc |
1.5 |
export OMP_NUM_THREADS=1 |
339 |
jmc |
1.1 |
|
340 |
jmc |
1.5 |
if test $sepDir = 0 ; then |
341 |
|
|
#-- cleaning: |
342 |
jmc |
1.7 |
echo "======================" |
343 |
jmc |
1.12 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
344 |
jmc |
1.7 |
if test $tt != $typ ; then |
345 |
|
|
cmdCLN="../tools/do_tst_2+2 -clean" |
346 |
jmc |
1.12 |
echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt |
347 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
348 |
jmc |
1.7 |
fi |
349 |
|
|
if test $tt != $last_Tst ; then |
350 |
|
|
cmdCLN="./testreport -clean" |
351 |
jmc |
1.12 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
352 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
353 |
jmc |
1.7 |
fi |
354 |
|
|
echo "======================" |
355 |
|
|
echo |
356 |
|
|
fi |
357 |
jmc |
1.34 |
cd $tdir |
358 |
jmc |
1.1 |
|
359 |
|
|
done |