| 1 |
jmc |
1.1 |
#! /usr/bin/env bash |
| 2 |
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| 3 |
jmc |
1.28 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/csail/test_baudelaire,v 1.27 2016/06/29 16:27:23 jmc Exp $ |
| 4 |
jmc |
1.1 |
|
| 5 |
jmc |
1.23 |
# Test script for MITgcm that should work on most of the csail.mit.edu Linux machines. |
| 6 |
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| 7 |
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tst_grp=0 ; if test $# = 1 ; then tst_grp=$1 ; fi |
| 8 |
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if test $tst_grp != 'a' -a $tst_grp != 'b' ; then |
| 9 |
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echo "missing or invalid argument (expect: 'a' or 'b') ==> exit" |
| 10 |
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exit 1 |
| 11 |
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fi |
| 12 |
jmc |
1.1 |
|
| 13 |
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# defaults |
| 14 |
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#export PATH="$PATH:/usr/local/bin" |
| 15 |
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if [ -d ~/bin ]; then export PATH=$PATH:~/bin ; fi |
| 16 |
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#- to get case insensitive "ls" (and order of tested experiments) |
| 17 |
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export LC_ALL="en_US.UTF-8" |
| 18 |
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# Turn off stack limit for FIZHI & AD-tests |
| 19 |
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ulimit -s unlimited |
| 20 |
jmc |
1.4 |
# MPI test (for now, only with gfortran) |
| 21 |
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export MPI_GCC_DIR=/srv/software/gcc/gcc-packages/gcc-4.4.5/mpich2/mpich2-1.3 |
| 22 |
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export MPI_INC_DIR=$MPI_GCC_DIR/include |
| 23 |
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export PATH="$PATH:$MPI_GCC_DIR/bin" |
| 24 |
jmc |
1.1 |
|
| 25 |
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#- method to acces CVS: |
| 26 |
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# export CVSROOT='/u/gcmpack' |
| 27 |
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# export CVSROOT=':ext:@mitgcm.org:/u/gcmpack' |
| 28 |
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# export CVS_RSH='ssh' ; cvs co -P MITgcm > /dev/null |
| 29 |
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# cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P MITgcm > /dev/null |
| 30 |
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cmdCVS='cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack' |
| 31 |
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cmdCVS='cvs -d /u/gcmpack' |
| 32 |
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| 33 |
jmc |
1.19 |
# checkOut=2 : download new code ; |
| 34 |
jmc |
1.20 |
# =3 : skip download but, if sepDir, use a new copy |
| 35 |
jmc |
1.19 |
# =1 : update code (if no existing code -> swith to 2) |
| 36 |
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# =0 : use existing code (if no existing code -> swith to 2) |
| 37 |
jmc |
1.11 |
dInWeek=`date +%a` |
| 38 |
jmc |
1.20 |
outDir=`hostname -s` |
| 39 |
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TESTDIR="/scratch/jmc/test_${outDir}" |
| 40 |
jmc |
1.23 |
outDir="${outDir}-${tst_grp}" |
| 41 |
jmc |
1.3 |
MC=13 |
| 42 |
jmc |
1.1 |
sepDir=1 |
| 43 |
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option= |
| 44 |
jmc |
1.20 |
#tst_list='g7a adm mpa g77 gfo+rs mth mp2+rs mpi ifc' |
| 45 |
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#if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm oad" ; fi |
| 46 |
jmc |
1.23 |
if test $tst_grp = 'a' ; then |
| 47 |
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checkOut=2 |
| 48 |
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tst_list='g7a mpa mth mp2+rs mpi oad' |
| 49 |
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else |
| 50 |
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checkOut=3 |
| 51 |
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tst_list='adm g77 gfo+rs ifc' |
| 52 |
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if test "x$dInWeek" = xSun ; then tst_list="$tst_list tlm" ; fi |
| 53 |
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fi |
| 54 |
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echo " test: $outDir ; list='$tst_list'" |
| 55 |
jmc |
1.1 |
|
| 56 |
jmc |
1.19 |
#option="-nc" ; checkOut=1 |
| 57 |
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#option="-q" ; checkOut=1 |
| 58 |
jmc |
1.1 |
|
| 59 |
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TODAY=`date +%d` |
| 60 |
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tdir=$TESTDIR |
| 61 |
jmc |
1.19 |
if test $checkOut != 2 ; then |
| 62 |
jmc |
1.7 |
if test -e $tdir/MITgcm/CVS ; then |
| 63 |
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echo $tdir/MITgcm/CVS 'exist' |
| 64 |
jmc |
1.19 |
if test $sepDir = 0 -a $checkOut = 1 ; then |
| 65 |
jmc |
1.15 |
echo -n "Update the MITgcm code using: $cmdCVS ..." |
| 66 |
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cd $tdir/MITgcm |
| 67 |
jmc |
1.7 |
$cmdCVS update -P -d |
| 68 |
jmc |
1.15 |
echo " done" |
| 69 |
jmc |
1.7 |
fi |
| 70 |
jmc |
1.1 |
else |
| 71 |
jmc |
1.7 |
echo -n $tdir/MITgcm 'missing ; ' |
| 72 |
jmc |
1.19 |
checkOut=2 |
| 73 |
jmc |
1.1 |
fi |
| 74 |
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fi |
| 75 |
jmc |
1.19 |
if test $checkOut = 2 ; then |
| 76 |
jmc |
1.1 |
if test -e $tdir ; then |
| 77 |
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echo -n "Removing working copy: $tdir/MITgcm ..." |
| 78 |
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test -e $tdir/MITgcm && rm -rf $tdir/MITgcm |
| 79 |
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else |
| 80 |
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echo -n "Creating a working dir: $tdir ..." |
| 81 |
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mkdir $tdir |
| 82 |
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fi |
| 83 |
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echo " done" |
| 84 |
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echo -n "Downloading the MITgcm code using: $cmdCVS ..." |
| 85 |
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cd $tdir |
| 86 |
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$cmdCVS co -P MITgcm > /dev/null |
| 87 |
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echo " done" |
| 88 |
jmc |
1.28 |
if test -d other_input ; then |
| 89 |
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list_dirs=`(cd other_input ; ls 2> /dev/null )` |
| 90 |
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echo -n "Updating other_input extra dirs: " |
| 91 |
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for exd in $list_dirs ; do |
| 92 |
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echo -n $exd |
| 93 |
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( cd other_input/$exd ; $cmdCVS update -P -d ) |
| 94 |
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done |
| 95 |
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echo " done" |
| 96 |
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fi |
| 97 |
jmc |
1.1 |
else |
| 98 |
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cd $tdir |
| 99 |
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fi |
| 100 |
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| 101 |
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#------------------------------------------------------------------------ |
| 102 |
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| 103 |
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firstTst=`echo $tst_list | awk '{print $1}'` |
| 104 |
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last_Tst=`echo $tst_list | awk '{print $NF}'` |
| 105 |
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for tt in $tst_list |
| 106 |
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do |
| 107 |
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| 108 |
jmc |
1.5 |
echo "================================================================" |
| 109 |
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typ=`echo $tt | sed 's/+rs//'` |
| 110 |
jmc |
1.22 |
#- define list of additional experiences to test: |
| 111 |
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addExp='' |
| 112 |
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if test $typ = 'mp2' -o $typ = 'ifc' ; then |
| 113 |
jmc |
1.24 |
addExp="offline_cheapaml atm_gray" |
| 114 |
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fi |
| 115 |
jmc |
1.27 |
if test $typ = 'gfo' -o $typ = 'ifc' ; then |
| 116 |
jmc |
1.26 |
addExp="$addExp global_oce_biogeo_bling" |
| 117 |
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fi |
| 118 |
jmc |
1.27 |
if test $typ = 'mpi' ; then |
| 119 |
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addExp="$addExp global_oce_cs32" |
| 120 |
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fi |
| 121 |
jmc |
1.26 |
if test $typ = 'gfo' ; then |
| 122 |
jmc |
1.24 |
addExp="$addExp shelfice_remeshing" |
| 123 |
jmc |
1.22 |
fi |
| 124 |
jmc |
1.5 |
#- check day and time: |
| 125 |
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curDay=`date +%d` ; curHour=`date +%H` |
| 126 |
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if [ $curDay -ne $TODAY ] ; then |
| 127 |
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date ; echo "day is over => skip test $typ" |
| 128 |
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continue |
| 129 |
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fi |
| 130 |
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if [ $curHour -ge 18 ] ; then |
| 131 |
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date ; echo "too late to run test $typ" |
| 132 |
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continue |
| 133 |
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fi |
| 134 |
jmc |
1.19 |
if test $sepDir = 0 -a "x$option" != x -a $tt != $last_Tst ; then |
| 135 |
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echo "using option='$option' prevent multi-tests => skip test $typ" |
| 136 |
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continue |
| 137 |
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fi |
| 138 |
jmc |
1.5 |
#- clean-up old output files |
| 139 |
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rm -f $tdir/output_${typ}* |
| 140 |
jmc |
1.12 |
touch $tdir/output_$tt |
| 141 |
jmc |
1.5 |
if test $sepDir = 1 ; then |
| 142 |
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new_dir="MITgcm_$typ" |
| 143 |
jmc |
1.20 |
reUse=1 ; if [ $checkOut -ge 2 ] ; then reUse=0 ; fi |
| 144 |
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if test -d $new_dir/CVS -a $reUse = 1 ; then |
| 145 |
jmc |
1.5 |
pushd $new_dir |
| 146 |
jmc |
1.14 |
if test $tt != $typ ; then |
| 147 |
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( cd verification ; ../tools/do_tst_2+2 -clean ) |
| 148 |
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fi |
| 149 |
jmc |
1.19 |
if test $checkOut = 1 ; then |
| 150 |
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echo -n "Update the MITgcm code using: $cmdCVS ..." |
| 151 |
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$cmdCVS update -P -d |
| 152 |
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echo " done" |
| 153 |
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fi |
| 154 |
jmc |
1.5 |
else |
| 155 |
jmc |
1.21 |
if test -d prev ; then |
| 156 |
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#-- save previous summary: |
| 157 |
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oldS=`ls -t ${new_dir}/verification/tr_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 158 |
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if test "x$oldS" != x ; then cp -p -f $oldS prev/tr_out.$typ ; fi |
| 159 |
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if test $tt != $typ ; then |
| 160 |
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oldS=`ls -t ${new_dir}/verification/rs_${outDir}_*/summary.txt 2> /dev/null | head -1` |
| 161 |
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if test "x$oldS" != x ; then cp -p -f $oldS prev/rs_out.$typ ; fi |
| 162 |
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fi |
| 163 |
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fi |
| 164 |
jmc |
1.5 |
test -e $new_dir && rm -rf $new_dir |
| 165 |
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mkdir $new_dir |
| 166 |
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pushd $new_dir |
| 167 |
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cp -ra ../MITgcm/* . |
| 168 |
jmc |
1.22 |
#-- download additional experience from Contrib: |
| 169 |
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for exp2add in $addExp ; do |
| 170 |
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echo " add dir: $exp2add (from Contrib:verification_other)" |
| 171 |
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( cd verification ; $cmdCVS co -P -d $exp2add \ |
| 172 |
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MITgcm_contrib/verification_other/$exp2add > /dev/null ) |
| 173 |
jmc |
1.27 |
if test $exp2add = 'global_oce_cs32' ; then |
| 174 |
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echo " link dir 'other_input/gael_oce_cs32_input' to 'input_fields'" |
| 175 |
jmc |
1.28 |
( cd verification/${exp2add} |
| 176 |
jmc |
1.27 |
ln -s ../../../other_input/gael_oce_cs32_input input_fields ) |
| 177 |
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fi |
| 178 |
jmc |
1.28 |
if test $exp2add = 'shelfice_remeshing' ; then |
| 179 |
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echo " link dir 'other_input/remeshing_code' to 'extra_code'" |
| 180 |
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( cd verification/${exp2add} |
| 181 |
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ln -s ../../../other_input/remeshing_code extra_code ) |
| 182 |
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fi |
| 183 |
jmc |
1.22 |
done |
| 184 |
jmc |
1.5 |
fi |
| 185 |
jmc |
1.1 |
else |
| 186 |
jmc |
1.5 |
pushd MITgcm |
| 187 |
jmc |
1.1 |
fi |
| 188 |
jmc |
1.5 |
cd verification |
| 189 |
jmc |
1.1 |
|
| 190 |
jmc |
1.5 |
#-- set the testreport command: |
| 191 |
jmc |
1.7 |
comm="./testreport" |
| 192 |
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if test $typ = 'g7a' -o $typ = 'adm' -o $typ = 'mpa' ; then |
| 193 |
jmc |
1.12 |
comm="$comm -adm" |
| 194 |
jmc |
1.18 |
elif test $typ = 'oad' ; then |
| 195 |
|
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comm="$comm -oad" |
| 196 |
jmc |
1.11 |
elif test $typ = 'tlm' ; then |
| 197 |
jmc |
1.12 |
comm="$comm -tlm" |
| 198 |
jmc |
1.5 |
elif test $typ = 'mth' -o $typ = 'mp2' ; then |
| 199 |
jmc |
1.4 |
export GOMP_STACKSIZE=400m |
| 200 |
jmc |
1.5 |
export OMP_NUM_THREADS=2 |
| 201 |
|
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comm="$comm -mth" |
| 202 |
jmc |
1.17 |
else |
| 203 |
|
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comm="$comm -md cyrus-makedepend" |
| 204 |
jmc |
1.5 |
fi |
| 205 |
jmc |
1.20 |
comm="$comm -odir $outDir -a jmc@mitgcm.org" |
| 206 |
jmc |
1.5 |
#-- set the optfile (+ mpi & match-precision) |
| 207 |
|
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MPI=0 |
| 208 |
|
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case $typ in |
| 209 |
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'g77'|'g7a') OPTFILE='../tools/build_options/linux_amd64_g77' ;; |
| 210 |
jmc |
1.18 |
'gfo'|'adm'|'oad'|'tlm'|'mth') comm="$comm -match $MC -devel" |
| 211 |
jmc |
1.11 |
OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 212 |
jmc |
1.20 |
'ifc') comm="$comm -devel" |
| 213 |
|
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OPTFILE='../tools/build_options/linux_amd64_ifort11' ;; |
| 214 |
jmc |
1.5 |
'pgi') OPTFILE='../tools/build_options/linux_amd64_pgf77' ;; |
| 215 |
jmc |
1.11 |
'mpa'|'mpi'|'mp2') comm="$comm -match $MC -devel" ; MPI=6 |
| 216 |
|
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OPTFILE='../tools/build_options/linux_amd64_gfortran' ;; |
| 217 |
jmc |
1.5 |
*) OPTFILE= ;; |
| 218 |
|
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esac |
| 219 |
|
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#-- set MPI command: |
| 220 |
jmc |
1.8 |
if test $MPI != 0 ; then |
| 221 |
|
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if test $typ = 'mp2' ; then MPI=3 ; fi |
| 222 |
jmc |
1.7 |
if test $typ = 'mpa' ; then |
| 223 |
jmc |
1.6 |
EXE="mpirun -np TR_NPROC ./mitgcmuv_ad" |
| 224 |
jmc |
1.5 |
else |
| 225 |
jmc |
1.6 |
EXE="mpirun -np TR_NPROC ./mitgcmuv" |
| 226 |
jmc |
1.5 |
fi |
| 227 |
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fi |
| 228 |
jmc |
1.1 |
|
| 229 |
jmc |
1.7 |
#-- set specific Env Vars: |
| 230 |
jmc |
1.18 |
if test $typ = 'oad' ; then |
| 231 |
|
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source ~jmc/mitgcm/bin/setenv_OpenAD.sh |
| 232 |
|
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fi |
| 233 |
jmc |
1.7 |
if test $typ = 'ifc' ; then |
| 234 |
|
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source /srv/software/intel/intel-11.1.073/bin/ifortvars.sh intel64 |
| 235 |
|
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fi |
| 236 |
|
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if test $typ = 'pgi' ; then |
| 237 |
jmc |
1.8 |
#listT='fizhi-cs-32x32x40 fizhi-cs-aqualev20' |
| 238 |
jmc |
1.7 |
export PGI=/srv/software/pgi/pgi-10.9 |
| 239 |
|
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export PATH="$PATH:$PGI/linux86-64/10.9/bin" |
| 240 |
|
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export LM_LICENSE_FILE=$PGI/license.dat |
| 241 |
|
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fi |
| 242 |
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|
| 243 |
jmc |
1.19 |
if test $sepDir = 0 -a "x$option" = x -a $tt = $firstTst -a $checkOut != 2 ; then |
| 244 |
jmc |
1.1 |
#-- cleaning: |
| 245 |
jmc |
1.5 |
echo "======================" |
| 246 |
jmc |
1.12 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 247 |
jmc |
1.1 |
cmdCLN="./testreport -clean" |
| 248 |
jmc |
1.12 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 249 |
|
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$cmdCLN >> $tdir/output_$tt 2>&1 |
| 250 |
jmc |
1.5 |
echo "======================" |
| 251 |
jmc |
1.12 |
echo "" | tee -a $tdir/output_$tt |
| 252 |
jmc |
1.1 |
fi |
| 253 |
|
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|
| 254 |
jmc |
1.5 |
#-- run the testreport command: |
| 255 |
jmc |
1.12 |
echo -n "Running testreport using:" | tee -a $tdir/output_$tt |
| 256 |
jmc |
1.1 |
if test "x$OPTFILE" != x ; then |
| 257 |
|
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comm="$comm -of=$OPTFILE" |
| 258 |
|
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fi |
| 259 |
jmc |
1.12 |
if test $MPI = 0 ; then echo '' | tee -a $tdir/output_$tt |
| 260 |
|
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else echo " (EXE='$EXE')" | tee -a $tdir/output_$tt |
| 261 |
jmc |
1.8 |
comm="$comm -MPI $MPI -command \"\$EXE\"" |
| 262 |
|
|
fi |
| 263 |
jmc |
1.1 |
if test "x$option" != x ; then comm="$comm $option" ; fi |
| 264 |
jmc |
1.8 |
#if test $typ = 'pgi' ; then comm="$comm -t \"\$listT\"" ; fi |
| 265 |
jmc |
1.12 |
echo " \"eval $comm\"" | tee -a $tdir/output_$tt |
| 266 |
jmc |
1.1 |
echo "======================" |
| 267 |
jmc |
1.12 |
eval $comm >> $tdir/output_$tt 2>&1 |
| 268 |
|
|
sed -n "/^An email /,/^======== End of testreport / p" $tdir/output_$tt |
| 269 |
|
|
echo "" | tee -a $tdir/output_$tt |
| 270 |
jmc |
1.1 |
|
| 271 |
jmc |
1.5 |
#-- also test restart (test 2+2=4) |
| 272 |
|
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if test $tt != $typ |
| 273 |
|
|
then |
| 274 |
jmc |
1.12 |
echo "testing restart using:" | tee -a $tdir/output_$tt |
| 275 |
jmc |
1.20 |
comm="../tools/do_tst_2+2 -o $outDir -a jmc@mitgcm.org" |
| 276 |
jmc |
1.8 |
if test $MPI = 0 ; then |
| 277 |
jmc |
1.12 |
echo " \"$comm\"" | tee -a $tdir/output_$tt |
| 278 |
jmc |
1.8 |
echo "======================" |
| 279 |
jmc |
1.12 |
$comm >> $tdir/output_$tt 2>&1 |
| 280 |
jmc |
1.8 |
else |
| 281 |
jmc |
1.12 |
echo " \"$comm -mpi -exe $EXE\"" | tee -a $tdir/output_$tt |
| 282 |
jmc |
1.5 |
echo "======================" |
| 283 |
jmc |
1.12 |
$comm -mpi -exe "$EXE" >> $tdir/output_$tt 2>&1 |
| 284 |
jmc |
1.5 |
fi |
| 285 |
|
|
echo ; cat tst_2+2_out.txt |
| 286 |
|
|
echo |
| 287 |
jmc |
1.1 |
fi |
| 288 |
jmc |
1.5 |
export OMP_NUM_THREADS=1 |
| 289 |
jmc |
1.1 |
|
| 290 |
jmc |
1.5 |
if test $sepDir = 0 ; then |
| 291 |
|
|
#-- cleaning: |
| 292 |
jmc |
1.7 |
echo "======================" |
| 293 |
jmc |
1.12 |
echo "Cleaning test directories:" | tee -a $tdir/output_$tt |
| 294 |
jmc |
1.7 |
if test $tt != $typ ; then |
| 295 |
|
|
cmdCLN="../tools/do_tst_2+2 -clean" |
| 296 |
jmc |
1.12 |
echo " clean tst_2+2 running: $cmdCLN" | tee -a $tdir/output_$tt |
| 297 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 298 |
jmc |
1.7 |
fi |
| 299 |
|
|
if test $tt != $last_Tst ; then |
| 300 |
|
|
cmdCLN="./testreport -clean" |
| 301 |
jmc |
1.12 |
echo " clean dir running: $cmdCLN" | tee -a $tdir/output_$tt |
| 302 |
|
|
$cmdCLN >> $tdir/output_$tt 2>&1 |
| 303 |
jmc |
1.7 |
fi |
| 304 |
|
|
echo "======================" |
| 305 |
|
|
echo |
| 306 |
|
|
fi |
| 307 |
|
|
popd |
| 308 |
jmc |
1.1 |
|
| 309 |
|
|
done |
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