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add warning about inappropriate user masks and/or file permissions that will cause the file dependency code to break (I think this fixes the problem reported by S. Vinogradov -- will need testing) : http://forge.csail.mit.edu/pipermail/mitgcm-support/2006-February/003781.html
o more attempts to get testing on columbia working smoothly
o update script
o try to fix columbia setup
use the right optfile.
o update scripts for Columbia
o initial check-in
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