Annotation of /MITgcm/tools/example_scripts/cg01_pgi_test_mpi

#!/bin/bash
#
# o -N Job Name
#PBS -N eh3_pgi
#
# o -l ask for 3 nodes, each with the attribute "p4".
#PBS -l nodes=2:p4
#
# o Where to write output
#PBS -e /cluster/home/edhill/err_pgi
#PBS -o /cluster/home/edhill/out_pgi
#
# o Export all my environment variables to the job
#PBS -V
#

VENDOR=pgi
MF="mf_"$VENDOR
RUNIT="runit_"$VENDOR
cd ~edhill
HERE=`pwd`
cat $PBS_NODEFILE > $MF
NCPU=`wc -l $MF | awk '{print $1}'`
MPI="/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/"$VENDOR"/bin/mpirun.ch_gm"
EXE="$MPI -machinefile $HERE/$MF --gm-kill 5 -v -np $NCPU ./mitgcmuv"

cat << EOF > $RUNIT
#!/bin/bash

$EXE

cp STDOUT.0000 output.txt

EOF
chmod a+x $RUNIT

COMMAND="$HERE/$RUNIT"

cat << EOF > $HERE"/.cvspass"
/1 :pserver:cvsanon@mitgcm.org:2401/usr/local/gcmpack Ah<Zy=0=
EOF
TDIR="tmp_"$VENDOR
if test -e $TDIR ; then
    rm -rf $TDIR
fi
mkdir $TDIR
cd $TDIR
cvs -d :pserver:cvsanon@mitgcm.org:/usr/local/gcmpack co MITgcm
cd MITgcm/verification
OPTFILE="../tools/build_options/linux_"$VENDOR"_cg01_mpi"
./testreport -mpi -of $OPTFILE -command $COMMAND


1	edhill	1.1	#!/bin/bash
2			#
3			# o -N Job Name
4			#PBS -N eh3_pgi
5			#
6			# o -l ask for 3 nodes, each with the attribute "p4".
7			#PBS -l nodes=2:p4
8			#
9			# o Where to write output
10			#PBS -e /cluster/home/edhill/err_pgi
11			#PBS -o /cluster/home/edhill/out_pgi
12			#
13			# o Export all my environment variables to the job
14			#PBS -V
15			#
16
17			VENDOR=pgi
18			MF="mf_"$VENDOR
19			RUNIT="runit_"$VENDOR
20			cd ~edhill
21			HERE=`pwd`
22			cat $PBS_NODEFILE > $MF
23			NCPU=`wc -l $MF \| awk '{print $1}'`
24			MPI="/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/"$VENDOR"/bin/mpirun.ch_gm"
25			EXE="$MPI -machinefile $HERE/$MF --gm-kill 5 -v -np $NCPU ./mitgcmuv"
26
27			cat << EOF > $RUNIT
28			#!/bin/bash
29
30			$EXE
31
32			cp STDOUT.0000 output.txt
33
34			EOF
35			chmod a+x $RUNIT
36
37			COMMAND="$HERE/$RUNIT"
38
39			cat << EOF > $HERE"/.cvspass"
40			/1 :pserver:cvsanon@mitgcm.org:2401/usr/local/gcmpack Ah<Zy=0=
41			EOF
42			TDIR="tmp_"$VENDOR
43			if test -e $TDIR ; then
44			rm -rf $TDIR
45			fi
46			mkdir $TDIR
47			cd $TDIR
48			cvs -d :pserver:cvsanon@mitgcm.org:/usr/local/gcmpack co MITgcm
49			cd MITgcm/verification
50			OPTFILE="../tools/build_options/linux_"$VENDOR"_cg01_mpi"
51			./testreport -mpi -of $OPTFILE -command $COMMAND
52
53