Contents of /MITgcm/tools/example_scripts/cg01/cg01_pgi_test_mpi

#!/bin/bash
#
# o -N Job Name
#PBS -N eh3_pgi
#
# o -l ask for 3 nodes, each with the attribute "p4".
#PBS -l nodes=2:p4
#
# o Where to write output
#PBS -e /cluster/home/edhill/err_pgi
#PBS -o /cluster/home/edhill/out_pgi
#
# o Export all my environment variables to the job
#PBS -V
#

VENDOR=pgi
MF="mf_"$VENDOR
RUNIT="runit_"$VENDOR
cd ~edhill
HERE=`pwd`
cat $PBS_NODEFILE > $MF
NCPU=`wc -l $MF | awk '{print $1}'`
MPI="/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/"$VENDOR"/bin/mpirun.ch_gm"
EXE="$MPI -machinefile $HERE/$MF --gm-kill 5 -v -np $NCPU ./mitgcmuv"

cat << EOF > $RUNIT
#!/bin/bash

$EXE

cp STDOUT.0000 output.txt

EOF
chmod a+x $RUNIT

COMMAND="$HERE/$RUNIT"

# cat << EOF > $HERE"/.cvspass"
# /1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=
# EOF
TDIR="/SCRATCH/s06/edhill/tmp_"$VENDOR
if test -e $TDIR ; then
    rm -rf $TDIR
fi
mkdir $TDIR
cd $TDIR
cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co MITgcm
#  cvs co MITgcm
cd MITgcm/verification
OPTFILE="../tools/build_options/linux_ia32_pgf77+mpi_cg01"
./testreport -mpi -of $OPTFILE -command $COMMAND -odir "cg01_"$VENDOR -a 'edhill@mitgcm.org'
1	#!/bin/bash
2	#
3	# o -N Job Name
4	#PBS -N eh3_pgi
5	#
6	# o -l ask for 3 nodes, each with the attribute "p4".
7	#PBS -l nodes=2:p4
8	#
9	# o Where to write output
10	#PBS -e /cluster/home/edhill/err_pgi
11	#PBS -o /cluster/home/edhill/out_pgi
12	#
13	# o Export all my environment variables to the job
14	#PBS -V
15	#
16
17	VENDOR=pgi
18	MF="mf_"$VENDOR
19	RUNIT="runit_"$VENDOR
20	cd ~edhill
21	HERE=`pwd`
22	cat $PBS_NODEFILE > $MF
23	NCPU=`wc -l $MF \| awk '{print $1}'`
24	MPI="/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/"$VENDOR"/bin/mpirun.ch_gm"
25	EXE="$MPI -machinefile $HERE/$MF --gm-kill 5 -v -np $NCPU ./mitgcmuv"
26
27	cat << EOF > $RUNIT
28	#!/bin/bash
29
30	$EXE
31
32	cp STDOUT.0000 output.txt
33
34	EOF
35	chmod a+x $RUNIT
36
37	COMMAND="$HERE/$RUNIT"
38
39	# cat << EOF > $HERE"/.cvspass"
40	# /1 :pserver:cvsanon@mitgcm.org:2401/u/gcmpack Ah<Zy=0=
41	# EOF
42	TDIR="/SCRATCH/s06/edhill/tmp_"$VENDOR
43	if test -e $TDIR ; then
44	rm -rf $TDIR
45	fi
46	mkdir $TDIR
47	cd $TDIR
48	cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co MITgcm
49	# cvs co MITgcm
50	cd MITgcm/verification
51	OPTFILE="../tools/build_options/linux_ia32_pgf77+mpi_cg01"
52	./testreport -mpi -of $OPTFILE -command $COMMAND -odir "cg01_"$VENDOR -a 'edhill@mitgcm.org'