#!/bin/bash # #PBS -q four-twelve #PBS -N tst_tlm #PBS -l nodes=1:ppn=2 #PBS -e /home/jmc/test_aces/output/tst_tlm.stderr #PBS -o /home/jmc/test_aces/output/tst_tlm.stdout # $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/example_scripts/ACESgrid/Attic/aces_test_op64_tlm,v 1.6 2013/08/20 18:53:11 jmc Exp $ # $Name: $ # ACES-grid PBS-batch script: test using open64 + "Trap Un-initialised Var." option if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh fi # Note: added "ulimit -s unlimited" in file "~/.bashrc" # to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI dNam='aces' TST_DIR="$HOME/test_$dNam" echo "start from TST_DIR='$TST_DIR' at: "`date` umask 0022 #- to get case insensitive "ls" (and order of tested experiments) export LC_ALL="en_US.UTF-8" HERE=$TST_DIR/output sfx='tlm' module add open64 export NETCDF_ROOT='/usr/local/pkg/netcdf/netcdf-3.5.1/g77' OPTFILE="../tools/build_options/linux_ia32_open64" options='-tlm -devel -gsl' export GSL_IEEE_MODE=double-precision,mask-underflow,mask-denormalized #- need this to get "staf": export PATH="$PATH:$HOME/bin" #- keep a copy of MPI_MFILE: cp -p $PBS_NODEFILE $HERE"/mf_"$sfx checkOut=1 ; options="$options -do" #options="$options -nc" ; checkOut=0 #options="$options -q" ; checkOut=0 addExp=0 cvsArg="-d :pserver:cvsanon@mitgcm.org:/u/gcmpack" gcmDIR="MITgcm_$sfx" cd $TST_DIR #- check for disk space: relative space (99%) or absolute (1.G): #dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` #if [ $dsp -gt 99 ] ; then dsp=`df -P . | tail -1 | awk '{print $4}'` if [ $dsp -le 1000000 ] ; then echo 'Not enough space on this disk => do not run testreport.' df . exit fi if [ $checkOut -eq 1 ] ; then if test -d $gcmDIR/CVS ; then #- remove previous output tar files and tar & remove previous output-dir /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz ( cd $gcmDIR/verification listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` for dd in $listD do if test -d $dd ; then tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd RETVAL=$? if test "x$RETVAL" != x0 ; then echo "ERROR in tar+gzip prev outp-dir: $dd" echo " on '"`hostname`"' (return val=$RETVAL) but continue" fi fi done ) # ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) #- clean-up previous TAF output temp dir (generated on old system like here) ( cd $gcmDIR/verification ; /bin/rm -rf */build/PaxHeaders.[0-9]* ) echo "cvs update of dir $gcmDIR :" ( cd $gcmDIR ; cvs -q $cvsArg update -P -d ) 2>&1 RETVAL=$? if test "x$RETVAL" != x0 ; then echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" exit fi else echo "no dir: $gcmDIR/CVS => try a fresh check-out" checkOut=2 fi fi if [ $checkOut -eq 2 ] ; then if test -e $gcmDIR ; then rm -rf $gcmDIR fi # cvs co MITgcm cvs $cvsArg co -P -d $gcmDIR MITgcm > /dev/null 2>&1 if [ $addExp -ge 1 ]; then echo " add dir: offline_cheapaml (from Contrib:verification_other)" ( cd $gcmDIR/verification ; cvs $cvsArg co -P -d offline_cheapaml \ MITgcm_contrib/verification_other/offline_cheapaml > /dev/null 2>&1 ) fi /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs /usr/bin/find $gcmDIR -type f | xargs chmod g+r fi #- change dir to $gcmDIR/verification dir: if test -e $gcmDIR/verification ; then if [ $checkOut -lt 2 ] ; then echo " dir $gcmDIR/verification exist" ; fi cd $gcmDIR/verification else echo "no dir: $gcmDIR/verification => exit" exit fi SavD="$HOME/test_$dNam/send" SEND="ssh geo $SavD/mpack" echo ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ -send \"$SEND\" -sd $SavD -a jmc@mitgcm.org ./testreport $options -of $OPTFILE -odir ${dNam}-$sfx \ -send "$SEND" -sd $SavD -a jmc@mitgcm.org #echo -n 'run ./testreport -clean ...' #./testreport -tlm -clean > /dev/null 2>&1 #echo -n ' done at: ' ; date