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jmc |
1.1 |
#!/bin/bash |
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# |
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jmc |
1.2 |
#PBS -q long |
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jmc |
1.1 |
#PBS -N tst_mp2 |
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#PBS -l nodes=2:ppn=2 |
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#PBS -e /home/jmc/test_ACES/output/tst_mp2.stderr |
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#PBS -o /home/jmc/test_ACES/output/tst_mp2.stdout |
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jmc |
1.7 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_mp2_mth,v 1.6 2010/05/20 19:22:30 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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# ACES-grid PBS-batch script for MPI+Multi-Threaded test using ifort (v9) & mpich2 |
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if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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jmc |
1.4 |
TST_DIR="/home/jmc/test_ACES" |
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HERE=$TST_DIR/output |
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#cd $HERE |
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jmc |
1.1 |
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sfx='mp2' |
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#- to build: |
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module add ifc/9.0.021 icc/9.0.021 intel/9.0 |
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module add mpich2/1.0.3/intel |
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module add netcdf/3.6.1/icc |
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export MPI_INC_DIR='/usr/local/pkg/mpich2/mpich2-1.0.3/intel/include/' |
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#- to run: |
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module add mpiexec |
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OPTFILE="../tools/build_options/linux_ia32_ifort+mpi_aces" |
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#OPTFILE="$HERE/linux_ia32_ifort+mpi_aces" |
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options='-j 2 -mpi -mth -match 10' |
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export OMP_NUM_THREADS=2 |
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#export KMP_STACKSIZE=400m <-- added in file "~/.bashrc" |
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checkOut=1 |
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#options="$options -nc" ; checkOut=0 |
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#options="$options -q" ; checkOut=0 |
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MF=$HERE"/mf_"$sfx |
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cat $PBS_NODEFILE | sort | uniq > $MF |
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NCPU=`wc -l $MF | awk '{print $1}'` |
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EXE="mpiexec -pernode -comm pmi -np $NCPU ./mitgcmuv" |
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gcmDIR="MITgcm_$sfx" |
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cd $TST_DIR |
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#- check for disk space: |
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jmc |
1.7 |
dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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jmc |
1.1 |
if [ $dsp -gt 99 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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jmc |
1.2 |
/bin/rm -rf $gcmDIR/verification/??_aces-${sfx}_????????_? |
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jmc |
1.1 |
# ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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echo "cvs update of dir $gcmDIR :" |
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jmc |
1.6 |
( cd $gcmDIR ; cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack update -P -d ) 2>&1 |
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jmc |
1.1 |
else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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rm -rf $gcmDIR |
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fi |
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cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d $gcmDIR MITgcm > /dev/null 2>&1 |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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else |
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if test -e $gcmDIR/verification ; then |
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echo "dir $gcmDIR/verification exist" |
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else |
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echo "no dir $gcmDIR/verification => exit" |
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exit |
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fi |
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fi |
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jmc |
1.3 |
#-- in case mpiexec get stuck, run this script in background to check |
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if test -x $HERE/check_$sfx ; then |
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echo "start check_$sfx in background" |
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jmc |
1.5 |
mv -f $HERE/check_${sfx}.log $HERE/check_${sfx}.log_bak |
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jmc |
1.3 |
( cd $HERE ; ./check_$sfx > check_${sfx}.log 2>&1 ) & |
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fi |
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jmc |
1.1 |
cd $gcmDIR/verification |
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echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir aces-$sfx |
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./testreport $options -of $OPTFILE -command "$EXE" -odir aces-$sfx |
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#echo ../tools/do_tst_2+2 -mpi -exe \"$EXE\" -o aces-$sfx -a NONE |
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#../tools/do_tst_2+2 -mpi -exe "$EXE" -o aces-$sfx -a NONE |
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