| 1 |
jmc |
1.1 |
#!/bin/bash |
| 2 |
|
|
# |
| 3 |
jmc |
1.4 |
#PBS -q four-twelve |
| 4 |
jmc |
1.1 |
#PBS -N tst_ifc |
| 5 |
jmc |
1.17 |
#PBS -l nodes=3:ppn=2 |
| 6 |
jmc |
1.22 |
#PBS -e /home/jmc/test_aces/output/tst_ifc.stderr |
| 7 |
|
|
#PBS -o /home/jmc/test_aces/output/tst_ifc.stdout |
| 8 |
jmc |
1.1 |
|
| 9 |
jmc |
1.32 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_ifc_mpi,v 1.31 2014/05/08 18:44:03 jmc Exp $ |
| 10 |
jmc |
1.1 |
# $Name: $ |
| 11 |
|
|
|
| 12 |
jmc |
1.12 |
# ACES-grid PBS-batch script for MPI test using ifort (default=v8) & mpich |
| 13 |
|
|
|
| 14 |
jmc |
1.11 |
if test -f /etc/profile.d/modules.sh ; then |
| 15 |
|
|
. /etc/profile.d/modules.sh |
| 16 |
|
|
fi |
| 17 |
|
|
# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
| 18 |
jmc |
1.12 |
# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
| 19 |
jmc |
1.11 |
|
| 20 |
jmc |
1.5 |
umask 0022 |
| 21 |
jmc |
1.11 |
#- to get case insensitive "ls" (and order of tested experiments) |
| 22 |
|
|
export LC_ALL="en_US.UTF-8" |
| 23 |
jmc |
1.30 |
echo " running on: "`hostname` |
| 24 |
|
|
|
| 25 |
|
|
dNam='aces' |
| 26 |
|
|
HERE="$HOME/test_$dNam" |
| 27 |
jmc |
1.31 |
OUTP="$HERE/output"; SavD="$HERE/send" |
| 28 |
jmc |
1.30 |
SEND="ssh geo $SavD/mpack" |
| 29 |
|
|
TST_DIR=$HERE |
| 30 |
|
|
|
| 31 |
|
|
if test -d $TST_DIR ; then |
| 32 |
|
|
echo "start from TST_DIR='$TST_DIR' at: "`date` |
| 33 |
|
|
else |
| 34 |
|
|
# if test ! -d /scratch/jm_c ; then mkdir /scratch/jm_c ; fi |
| 35 |
|
|
if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi |
| 36 |
|
|
if test ! -d $TST_DIR ; then |
| 37 |
|
|
echo "ERROR: Can't create directory \"$TST_DIR\"" |
| 38 |
|
|
exit 1 |
| 39 |
|
|
fi |
| 40 |
|
|
echo "start in new dir TST_DIR='$TST_DIR' at: "`date` |
| 41 |
|
|
fi |
| 42 |
jmc |
1.11 |
|
| 43 |
jmc |
1.5 |
sfx='ifc' |
| 44 |
jmc |
1.31 |
addExp='' |
| 45 |
jmc |
1.12 |
module add mpich/intel |
| 46 |
|
|
module add netcdf/3.6.1/icc |
| 47 |
jmc |
1.20 |
export MPI_INC_DIR='/usr/local/pkg/mpich/mpich-intel/include' |
| 48 |
|
|
OPTFILE="../tools/build_options/linux_ia32_ifort" |
| 49 |
jmc |
1.12 |
#OPTFILE="$HERE/linux_ia32_ifort+mpi_aces" |
| 50 |
jmc |
1.20 |
options="-j 2 -MPI 6 -mf $PBS_NODEFILE -devel" |
| 51 |
jmc |
1.17 |
EXE="mpirun -machinefile TR_MFILE -v -np TR_NPROC ./mitgcmuv" |
| 52 |
|
|
|
| 53 |
jmc |
1.24 |
checkOut=1 ; #options="$options -do" |
| 54 |
jmc |
1.6 |
#options="$options -nc" ; checkOut=0 |
| 55 |
|
|
#options="$options -q" ; checkOut=0 |
| 56 |
|
|
|
| 57 |
jmc |
1.31 |
#- keep a copy of MPI_MFILE: |
| 58 |
|
|
cp -p $PBS_NODEFILE $OUTP"/mf_"$sfx |
| 59 |
|
|
|
| 60 |
jmc |
1.27 |
cvsArg="-d :pserver:cvsanon@mitgcm.org:/u/gcmpack" |
| 61 |
jmc |
1.5 |
gcmDIR="MITgcm_$sfx" |
| 62 |
|
|
cd $TST_DIR |
| 63 |
jmc |
1.26 |
#- check for disk space: relative space (99%) or absolute (1.G): |
| 64 |
jmc |
1.21 |
#dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
| 65 |
|
|
#if [ $dsp -gt 99 ] ; then |
| 66 |
|
|
dsp=`df -P . | tail -1 | awk '{print $4}'` |
| 67 |
jmc |
1.22 |
if [ $dsp -le 1000000 ] ; then |
| 68 |
jmc |
1.7 |
echo 'Not enough space on this disk => do not run testreport.' |
| 69 |
|
|
df . |
| 70 |
|
|
exit |
| 71 |
|
|
fi |
| 72 |
|
|
if [ $checkOut -eq 1 ] ; then |
| 73 |
|
|
if test -d $gcmDIR/CVS ; then |
| 74 |
jmc |
1.23 |
#- remove previous output tar files and tar & remove previous output-dir |
| 75 |
|
|
/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
| 76 |
|
|
( cd $gcmDIR/verification |
| 77 |
jmc |
1.25 |
listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
| 78 |
jmc |
1.23 |
for dd in $listD |
| 79 |
|
|
do |
| 80 |
|
|
if test -d $dd ; then |
| 81 |
|
|
tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
| 82 |
|
|
RETVAL=$? |
| 83 |
|
|
if test "x$RETVAL" != x0 ; then |
| 84 |
|
|
echo "ERROR in tar+gzip prev outp-dir: $dd" |
| 85 |
|
|
echo " on '"`hostname`"' (return val=$RETVAL) but continue" |
| 86 |
|
|
fi |
| 87 |
|
|
fi |
| 88 |
|
|
done ) |
| 89 |
jmc |
1.9 |
( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
| 90 |
jmc |
1.28 |
#- clean-up previous TAF output temp dir (generated on old system like here) |
| 91 |
|
|
# ( cd $gcmDIR/verification ; /bin/rm -rf */build/PaxHeaders.[0-9]* ) |
| 92 |
jmc |
1.7 |
echo "cvs update of dir $gcmDIR :" |
| 93 |
jmc |
1.27 |
( cd $gcmDIR ; cvs -q $cvsArg update -P -d ) 2>&1 |
| 94 |
jmc |
1.18 |
RETVAL=$? |
| 95 |
|
|
if test "x$RETVAL" != x0 ; then |
| 96 |
jmc |
1.19 |
echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" |
| 97 |
jmc |
1.18 |
exit |
| 98 |
|
|
fi |
| 99 |
jmc |
1.7 |
else |
| 100 |
|
|
echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
| 101 |
|
|
checkOut=2 |
| 102 |
|
|
fi |
| 103 |
|
|
fi |
| 104 |
|
|
if [ $checkOut -eq 2 ] ; then |
| 105 |
jmc |
1.6 |
if test -e $gcmDIR ; then |
| 106 |
|
|
rm -rf $gcmDIR |
| 107 |
|
|
fi |
| 108 |
jmc |
1.17 |
# cvs co MITgcm |
| 109 |
jmc |
1.27 |
cvs $cvsArg co -P -d $gcmDIR MITgcm > /dev/null 2>&1 |
| 110 |
jmc |
1.31 |
for exp2add in $addExp ; do |
| 111 |
|
|
echo " add dir: $exp2add (from Contrib:verification_other)" |
| 112 |
|
|
( cd $gcmDIR/verification ; cvs $cvsArg co -P -d $exp2add \ |
| 113 |
|
|
MITgcm_contrib/verification_other/$exp2add > /dev/null 2>&1 ) |
| 114 |
|
|
done |
| 115 |
jmc |
1.6 |
/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
| 116 |
|
|
/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
| 117 |
jmc |
1.18 |
fi |
| 118 |
|
|
|
| 119 |
|
|
#- change dir to $gcmDIR/verification dir: |
| 120 |
|
|
if test -e $gcmDIR/verification ; then |
| 121 |
|
|
if [ $checkOut -lt 2 ] ; then |
| 122 |
|
|
echo " dir $gcmDIR/verification exist" ; fi |
| 123 |
|
|
cd $gcmDIR/verification |
| 124 |
jmc |
1.6 |
else |
| 125 |
jmc |
1.19 |
echo "no dir: $gcmDIR/verification => exit" |
| 126 |
jmc |
1.18 |
exit |
| 127 |
jmc |
1.1 |
fi |
| 128 |
|
|
|
| 129 |
jmc |
1.29 |
echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir ${dNam}-$sfx \ |
| 130 |
|
|
-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
| 131 |
|
|
./testreport $options -of $OPTFILE -command "$EXE" -odir ${dNam}-$sfx \ |
| 132 |
|
|
-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
| 133 |
jmc |
1.1 |
|
| 134 |
jmc |
1.17 |
echo '' |
| 135 |
jmc |
1.29 |
#echo ../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe \"$EXE\" -o ${dNam}-$sfx -a NONE |
| 136 |
|
|
#../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe "$EXE" -o ${dNam}-$sfx -a NONE |
| 137 |
|
|
echo ../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe \"$EXE\" -o ${dNam}-$sfx \ |
| 138 |
|
|
-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
| 139 |
|
|
../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe "$EXE" -o ${dNam}-$sfx \ |
| 140 |
|
|
-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
| 141 |
jmc |
1.9 |
|
Parent Directory
| 
Revision Log
| 
Revision Graph