#!/bin/bash # #PBS -q four-twelve #PBS -N tst_ifc #PBS -l nodes=3:ppn=2 #PBS -e /home/jmc/test_aces/output/tst_ifc.stderr #PBS -o /home/jmc/test_aces/output/tst_ifc.stdout # $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/example_scripts/ACESgrid/Attic/aces_test_ifc_mpi,v 1.23 2012/05/01 13:20:39 jmc Exp $ # $Name: $ # ACES-grid PBS-batch script for MPI test using ifort (default=v8) & mpich if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh fi # Note: added "ulimit -s unlimited" in file "~/.bashrc" # to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI dNam='aces' TST_DIR="$HOME/test_$dNam" echo "start from TST_DIR='$TST_DIR' at: "`date` umask 0022 #- to get case insensitive "ls" (and order of tested experiments) export LC_ALL="en_US.UTF-8" HERE=$TST_DIR/output sfx='ifc' module add mpich/intel module add netcdf/3.6.1/icc export MPI_INC_DIR='/usr/local/pkg/mpich/mpich-intel/include' OPTFILE="../tools/build_options/linux_ia32_ifort" #OPTFILE="$HERE/linux_ia32_ifort+mpi_aces" options="-j 2 -MPI 6 -mf $PBS_NODEFILE -devel" EXE="mpirun -machinefile TR_MFILE -v -np TR_NPROC ./mitgcmuv" #- keep a copy of MPI_MFILE: cp -p $PBS_NODEFILE $HERE"/mf_"$sfx checkOut=1 #options="$options -nc" ; checkOut=0 #options="$options -q" ; checkOut=0 gcmDIR="MITgcm_$sfx" cd $TST_DIR #- check for disk space: #dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` #if [ $dsp -gt 99 ] ; then dsp=`df -P . | tail -1 | awk '{print $4}'` if [ $dsp -le 1000000 ] ; then echo 'Not enough space on this disk => do not run testreport.' df . exit fi if [ $checkOut -eq 1 ] ; then if test -d $gcmDIR/CVS ; then #- remove previous output tar files and tar & remove previous output-dir /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz ( cd $gcmDIR/verification listD=`ls -1 -d ??_${dNam}-${sfx}_????????_?` for dd in $listD do if test -d $dd ; then tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd RETVAL=$? if test "x$RETVAL" != x0 ; then echo "ERROR in tar+gzip prev outp-dir: $dd" echo " on '"`hostname`"' (return val=$RETVAL) but continue" fi fi done ) ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) echo "cvs update of dir $gcmDIR :" ( cd $gcmDIR ; cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack update -P -d ) 2>&1 RETVAL=$? if test "x$RETVAL" != x0 ; then echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" exit fi else echo "no dir: $gcmDIR/CVS => try a fresh check-out" checkOut=2 fi fi if [ $checkOut -eq 2 ] ; then if test -e $gcmDIR ; then rm -rf $gcmDIR fi # cvs co MITgcm cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d $gcmDIR MITgcm > /dev/null 2>&1 /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs /usr/bin/find $gcmDIR -type f | xargs chmod g+r fi #- change dir to $gcmDIR/verification dir: if test -e $gcmDIR/verification ; then if [ $checkOut -lt 2 ] ; then echo " dir $gcmDIR/verification exist" ; fi cd $gcmDIR/verification else echo "no dir: $gcmDIR/verification => exit" exit fi echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir ${dNam}-$sfx ./testreport $options -of $OPTFILE -command "$EXE" -odir ${dNam}-$sfx echo '' echo ../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe \"$EXE\" -o ${dNam}-$sfx -a NONE ../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe "$EXE" -o ${dNam}-$sfx -a NONE