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#!/bin/bash |
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# |
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#PBS -q long |
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#PBS -N tst_mp2 |
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#PBS -l nodes=3:ppn=2 |
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#PBS -e /home/jmc/test_aces/output/tst_mp2.stderr |
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#PBS -o /home/jmc/test_aces/output/tst_mp2.stdout |
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|
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# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_ifc_mp2,v 1.2 2014/05/07 16:22:24 jmc Exp $ |
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# $Name: $ |
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|
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# ACES-grid PBS-batch script for MPI+Multi-Threaded test using ifort (v9) & mpich2 |
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|
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if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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|
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umask 0022 |
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#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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echo " running on: "`hostname` |
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|
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dNam='aces' |
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HERE="$HOME/test_$dNam" |
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OUTP="$HERE/output"; SavD="$HERE/send" |
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SEND="ssh geo $SavD/mpack" |
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TST_DIR=$HERE |
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|
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if test -d $TST_DIR ; then |
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echo "start from TST_DIR='$TST_DIR' at: "`date` |
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else |
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# if test ! -d /scratch/jm_c ; then mkdir /scratch/jm_c ; fi |
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if test ! -d $TST_DIR ; then mkdir $TST_DIR ; fi |
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if test ! -d $TST_DIR ; then |
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echo "ERROR: Can't create directory \"$TST_DIR\"" |
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exit 1 |
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fi |
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echo "start in new dir TST_DIR='$TST_DIR' at: "`date` |
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fi |
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|
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sfx='mp2' |
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addExp='' |
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#- to build: |
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module add ifc/9.0.021 icc/9.0.021 intel/9.0 |
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module add mpich2/1.0.3/intel |
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module add netcdf/3.6.1/icc |
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export MPI_INC_DIR='/usr/local/pkg/mpich2/mpich2-1.0.3/intel/include' |
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#- to run: |
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module add mpiexec |
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OPTFILE="../tools/build_options/linux_ia32_ifort" |
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options="-j 2 -MPI 3 -mth -mf $PBS_NODEFILE -devel" |
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export OMP_NUM_THREADS=2 |
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EXE="mpiexec -pernode -comm pmi -np TR_NPROC ./mitgcmuv" |
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#export KMP_STACKSIZE=400m <-- added in file "~/.bashrc" |
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|
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checkOut=1 ; options="$options -do" |
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#options="$options -nc" ; checkOut=0 |
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#options="$options -q" ; checkOut=0 |
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|
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#- keep a copy of MPI_MFILE: |
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cp -p $PBS_NODEFILE $OUTP"/mf_"$sfx |
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|
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cvsArg="-d :pserver:cvsanon@mitgcm.org:/u/gcmpack" |
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gcmDIR="MITgcm_$sfx" |
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cd $TST_DIR |
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#- check for disk space: relative space (99%) or absolute (1.G): |
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#dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
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#if [ $dsp -gt 99 ] ; then |
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dsp=`df -P . | tail -1 | awk '{print $4}'` |
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if [ $dsp -le 1000000 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
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#- remove previous output tar files and tar & remove previous output-dir |
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/bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz |
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( cd $gcmDIR/verification |
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listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` |
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for dd in $listD |
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do |
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if test -d $dd ; then |
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tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo "ERROR in tar+gzip prev outp-dir: $dd" |
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echo " on '"`hostname`"' (return val=$RETVAL) but continue" |
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fi |
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fi |
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done ) |
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# ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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#- clean-up previous TAF output temp dir (generated on old system like here) |
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# ( cd $gcmDIR/verification ; /bin/rm -rf */build/PaxHeaders.[0-9]* ) |
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echo "cvs update of dir $gcmDIR :" |
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( cd $gcmDIR ; cvs -q $cvsArg update -P -d ) 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" |
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exit |
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fi |
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else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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rm -rf $gcmDIR |
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fi |
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# cvs co MITgcm |
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cvs $cvsArg co -P -d $gcmDIR MITgcm > /dev/null 2>&1 |
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for exp2add in $addExp ; do |
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echo " add dir: $exp2add (from Contrib:verification_other)" |
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( cd $gcmDIR/verification ; cvs $cvsArg co -P -d $exp2add \ |
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MITgcm_contrib/verification_other/$exp2add > /dev/null 2>&1 ) |
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done |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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fi |
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|
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#- change dir to $gcmDIR/verification dir: |
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if test -e $gcmDIR/verification ; then |
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if [ $checkOut -lt 2 ] ; then |
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echo " dir $gcmDIR/verification exist" ; fi |
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cd $gcmDIR/verification |
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else |
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echo "no dir: $gcmDIR/verification => exit" |
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exit |
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fi |
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|
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#-- in case mpiexec get stuck, run this script in background to check |
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check_sh=${dNam}_check_$sfx |
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if test -x $OUTP/$check_sh ; then |
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echo "start $check_sh in background" |
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mv -f $OUTP/${check_sh}.log $OUTP/${check_sh}.log_bak |
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( cd $OUTP ; ./$check_sh > ${check_sh}.log 2>&1 ) & |
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fi |
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|
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echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir ${dNam}-$sfx \ |
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-send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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./testreport $options -of $OPTFILE -command "$EXE" -odir ${dNam}-$sfx \ |
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-send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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|
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#echo '' |
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#echo ../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe \"$EXE\" -o ${dNam}-$sfx \ |
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# -send \"$SEND\" -sd $SavD -a jmc@mitgcm.org |
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## -a NONE |
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#../tools/do_tst_2+2 -mpi -mf $PBS_NODEFILE -exe "$EXE" -o ${dNam}-$sfx \ |
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# -send "$SEND" -sd $SavD -a jmc@mitgcm.org |
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## -a NONE |
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