#!/bin/bash # #PBS -q four-twelve #PBS -N tst_gnu #PBS -l nodes=2:ppn=2 #PBS -e /home/jmc/test_aces/output/tst_gnu.stderr #PBS -o /home/jmc/test_aces/output/tst_gnu.stdout # $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/example_scripts/ACESgrid/Attic/aces_test_gnu_mpi,v 1.25 2013/06/13 22:01:34 jmc Exp $ # $Name: $ if test -f /etc/profile.d/modules.sh ; then . /etc/profile.d/modules.sh fi # Note: added "ulimit -s unlimited" in file "~/.bashrc" # to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI dNam='aces' TST_DIR="$HOME/test_$dNam" echo "start from TST_DIR='$TST_DIR' at: "`date` umask 0022 #- to get case insensitive "ls" (and order of tested experiments) export LC_ALL="en_US.UTF-8" HERE=$TST_DIR/output sfx='gnu' module add mpich/$sfx export MPI_INC_DIR='/usr/local/pkg/mpich/mpich-gcc/include' OPTFILE="../tools/build_options/linux_ia32_g77" options="-j 2 -MPI 4 -mf $PBS_NODEFILE" EXE="mpirun -machinefile TR_MFILE -v -np TR_NPROC ./mitgcmuv" #- keep a copy of MPI_MFILE: cp -p $PBS_NODEFILE $HERE"/mf_"$sfx checkOut=1 ; options="$options -do" #options="$options -nc" ; checkOut=0 #options="$options -q" ; checkOut=0 addExp=0 cvsArg="-d :pserver:cvsanon@mitgcm.org:/u/gcmpack" gcmDIR="MITgcm_$sfx" cd $TST_DIR #- check for disk space: relative space (99%) or absolute (1.G): #dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` #if [ $dsp -gt 99 ] ; then dsp=`df -P . | tail -1 | awk '{print $4}'` if [ $dsp -le 1000000 ] ; then echo 'Not enough space on this disk => do not run testreport.' df . exit fi if [ $checkOut -eq 1 ] ; then if test -d $gcmDIR/CVS ; then #- remove previous output tar files and tar & remove previous output-dir /bin/rm -f $gcmDIR/verification/??_${dNam}-${sfx}_????????_?.tar.gz ( cd $gcmDIR/verification listD=`ls -1 -d ??_${dNam}-${sfx}_????????_? 2> /dev/null` for dd in $listD do if test -d $dd ; then tar -cf ${dd}".tar" $dd > /dev/null 2>&1 && gzip ${dd}".tar" && /bin/rm -rf $dd RETVAL=$? if test "x$RETVAL" != x0 ; then echo "ERROR in tar+gzip prev outp-dir: $dd" echo " on '"`hostname`"' (return val=$RETVAL) but continue" fi fi done ) # ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) echo "cvs update of dir $gcmDIR :" ( cd $gcmDIR ; cvs -q $cvsArg update -P -d ) 2>&1 RETVAL=$? if test "x$RETVAL" != x0 ; then echo "cvs update on '"`hostname`"' fail (return val=$RETVAL) => exit" exit fi else echo "no dir: $gcmDIR/CVS => try a fresh check-out" checkOut=2 fi fi if [ $checkOut -eq 2 ] ; then if test -e $gcmDIR ; then rm -rf $gcmDIR fi # cvs co MITgcm cvs $cvsArg co -P -d $gcmDIR MITgcm > /dev/null 2>&1 if [ $addExp -ge 1 ]; then echo " add dir: offline_cheapaml (from Contrib:verification_other)" ( cd $gcmDIR/verification ; cvs $cvsArg co -P -d offline_cheapaml \ MITgcm_contrib/verification_other/offline_cheapaml > /dev/null 2>&1 ) fi /usr/bin/find $gcmDIR -type d | xargs chmod g+rxs /usr/bin/find $gcmDIR -type f | xargs chmod g+r fi #- change dir to $gcmDIR/verification dir: if test -e $gcmDIR/verification ; then if [ $checkOut -lt 2 ] ; then echo " dir $gcmDIR/verification exist" ; fi cd $gcmDIR/verification else echo "no dir: $gcmDIR/verification => exit" exit fi # avoid hanging in fizhi-cs-32x32x40 (due to I/O problems with g77) echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir ${dNam}-$sfx \ -skd fizhi-cs-32x32x40 ./testreport $options -of $OPTFILE -command "$EXE" -odir ${dNam}-$sfx \ -skd fizhi-cs-32x32x40