Annotation of /MITgcm/tools/example_scripts/ACESgrid/aces_test_all

#! /usr/bin/env bash

# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_all,v 1.8 2008/08/28 03:59:20 jmc Exp $
# $Name:  $

# action =2 : submit test jobs ; =1 : get jobs output ; =3 : do both
case $1 in
 '-subOnly') action=2 ; shift ;;
 '-getOnly') action=1 ; shift ;;
 '-sub+get') action=3 ; shift ;;
          *) action=3 ;;
esac
#echo "action= $action , Arg= $# "

echo -n '-- Starting: '
date
start=`date +%Y%m%d`

if test $# = 0
then
  tst_list='gnu ifc pgi mth tuv'
else
  tst_list=$*
fi

. /etc/profile.d/modules.sh
module list > ~/tmp/.module_list 2>&1

cd /home/jmc/test_ACES

# QSUB="/usr/local/bin/qsub"
# QSTAT="/usr/local/bin/qstat"
QSUB=qsub
QSTAT=qstat
MPACK="MITgcm_tools/mpack-1.6/mpack"
TST_DIR="/home/jmc/test_ACES/gcm_tests"

nbtst=0
for i in $tst_list
do
  sfx=`echo ${i}"_mpi" | sed 's/mth_mpi/ifc_mth/' | sed 's/tuv_mpi/op64_tuv/'`
  if test -f MITgcm_tools/example_scripts/ACESgrid/aces_test_$sfx ; then
    JOB="tst_"$i
    job_exist=`$QSTAT -a | grep $USER | grep $JOB | wc -l`
    if [ $action -ge 2 ] ; then 
    #-- to submit job
      if test "x_$job_exist" = x_0 ; then
        $QSUB MITgcm_tools/example_scripts/ACESgrid/aces_test_$sfx
        eval M_$i='submitted'
        nbtst=`expr $nbtst + 1`
      else 
        echo $JOB
        $QSTAT -a | grep $USER | grep $JOB
        echo 'job already exist => skip this test'
        eval M_$i='skipped'
      fi
    else
    #-- to get outp back:
      if test "x_$job_exist" = x_0 ; then
        echo -n 'did not find any job: '
        echo $JOB
        eval M_$i='skipped'
      else 
        echo -n 'found a job: '
        echo $JOB
        $QSTAT -a | grep $USER | grep $JOB
        eval M_$i='submitted'
        nbtst=`expr $nbtst + 1`
      fi
    fi
  else 
    echo 'no file:' aces_test_$sfx 'to submit'
    eval M_$i='skipped'
  fi
done

if test $action = 2 ; then 
  count=0
else
#date_str=`date +%Y%m%d`"_0"

  MPACKDIR=`dirname $MPACK`
#- build the mpack utility (from build_mpack in testreport):
  ( cd $MPACKDIR && ./configure && make ) > TTT.build_mpack.$$ 2>&1
  RETVAL=$?
  if test "x$RETVAL" != x0 ; then
    echo
    echo "Error building the mpack tools at: $MPACK_DIR"
    if test -x $MPACK ; then
       HAVE_MPACK=t
       echo "  use (old ?) executable:" ; ls -l $MPACK
    else
       HAVE_MPACK=f
    fi
  else
    if test -x $MPACK ; then
       rm -f TTT.build_mpack.$$
       HAVE_MPACK=t
       echo " building mpack: OK"
    else
       echo " $MPACK not executable"
       HAVE_MPACK=f
    fi
  fi
  echo

  count=$nbtst
fi

#- when it's done, retrieve output and send e-mail
minutes=0
while test $count != 0 ; do

    sleep 600
    minutes=$(( $minutes + 10 ))

    for i in $tst_list ; do

      eval comm=\$M_$i
      if test $comm = 'submitted' ; then
        JOB="tst_"$i
        ready_to_send=`$QSTAT -a | grep $USER | grep $JOB | wc -l`

        if test "x_$ready_to_send" = x_0 ; then
            run_dir=${TST_DIR}"/MITgcm_"$i"/verification"
            tdir=`ls -1 -t $run_dir | grep -v tr_out | grep '^tr_aces' | head -1`
            #- check this is the right output
            chk=`echo $tdir | grep -c $start`
            if test $chk = '0' ; then
              curday=`date +%Y%m%d`
              chk=`echo $tdir | grep -c $curday`
            fi
            if test "x$tdir" = x ; then
              echo "Output not found so no email sent for $i"
            elif test $chk = '0' ; then
              echo "tdir='$tdir'"
              echo "Output do not match so no email sent for $i"
            else
              rm -f "/tmp/tr_aces-"$i".tar.gz"
              ( cd $run_dir ; tar -czf "/tmp/tr_aces-"$i".tar.gz" ./$tdir )
              if test "x$HAVE_MPACK" = xt ; then
                $MPACK -s MITgcm-test -m 3555000 "/tmp/tr_aces-"$i".tar.gz" jmc@mitgcm.org
                echo "Email sent for $i"
              else
                echo "no email sent for $i (no mpack)"
              fi
            fi
            eval M_$i=done
            count=`expr $count - 1`
            chmod 644 output/tst_$i.std*
        fi
      fi
    done
    
    #  "long" queue is 24hrs = 24*60min = 1440min
    if test $minutes -gt 2160 ; then
        hrs=$(( $minutes / 60 ));
        echo "Time expired after $minutes minutes ($hrs hours)"
        echo ' ' $count '/' $nbtst 'tests not yet finished'
        exit 1
    fi

done

echo "All $nbtst tests completed successfully."
echo -n '-- Finished: '
date

1	jmc	1.1	#! /usr/bin/env bash
2
3	jmc	1.9	# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_all,v 1.8 2008/08/28 03:59:20 jmc Exp $
4	jmc	1.1	# $Name: $
5
6	jmc	1.9	# action =2 : submit test jobs ; =1 : get jobs output ; =3 : do both
7			case $1 in
8			'-subOnly') action=2 ; shift ;;
9			'-getOnly') action=1 ; shift ;;
10			'-sub+get') action=3 ; shift ;;
11			*) action=3 ;;
12			esac
13			#echo "action= $action , Arg= $# "
14
15	jmc	1.4	echo -n '-- Starting: '
16			date
17	jmc	1.8	start=`date +%Y%m%d`
18	jmc	1.9
19	jmc	1.1	if test $# = 0
20			then
21	jmc	1.5	tst_list='gnu ifc pgi mth tuv'
22	jmc	1.1	else
23			tst_list=$*
24			fi
25
26			. /etc/profile.d/modules.sh
27			module list > ~/tmp/.module_list 2>&1
28
29	jmc	1.4	cd /home/jmc/test_ACES
30	jmc	1.1
31			# QSUB="/usr/local/bin/qsub"
32			# QSTAT="/usr/local/bin/qstat"
33			QSUB=qsub
34			QSTAT=qstat
35	jmc	1.4	MPACK="MITgcm_tools/mpack-1.6/mpack"
36	jmc	1.1	TST_DIR="/home/jmc/test_ACES/gcm_tests"
37
38			nbtst=0
39			for i in $tst_list
40			do
41	jmc	1.5	sfx=`echo ${i}"_mpi" \| sed 's/mth_mpi/ifc_mth/' \| sed 's/tuv_mpi/op64_tuv/'`
42	jmc	1.4	if test -f MITgcm_tools/example_scripts/ACESgrid/aces_test_$sfx ; then
43			JOB="tst_"$i
44			job_exist=`$QSTAT -a \| grep $USER \| grep $JOB \| wc -l`
45	jmc	1.9	if [ $action -ge 2 ] ; then
46			#-- to submit job
47			if test "x_$job_exist" = x_0 ; then
48			$QSUB MITgcm_tools/example_scripts/ACESgrid/aces_test_$sfx
49			eval M_$i='submitted'
50			nbtst=`expr $nbtst + 1`
51			else
52			echo $JOB
53			$QSTAT -a \| grep $USER \| grep $JOB
54			echo 'job already exist => skip this test'
55			eval M_$i='skipped'
56			fi
57			else
58			#-- to get outp back:
59			if test "x_$job_exist" = x_0 ; then
60			echo -n 'did not find any job: '
61			echo $JOB
62			eval M_$i='skipped'
63			else
64			echo -n 'found a job: '
65			echo $JOB
66			$QSTAT -a \| grep $USER \| grep $JOB
67			eval M_$i='submitted'
68			nbtst=`expr $nbtst + 1`
69			fi
70	jmc	1.4	fi
71	jmc	1.1	else
72			echo 'no file:' aces_test_$sfx 'to submit'
73	jmc	1.4	eval M_$i='skipped'
74	jmc	1.1	fi
75			done
76
77	jmc	1.9	if test $action = 2 ; then
78			count=0
79			else
80	jmc	1.4	#date_str=`date +%Y%m%d`"_0"
81	jmc	1.1
82	jmc	1.9	MPACKDIR=`dirname $MPACK`
83	jmc	1.7	#- build the mpack utility (from build_mpack in testreport):
84	jmc	1.9	( cd $MPACKDIR && ./configure && make ) > TTT.build_mpack.$$ 2>&1
85			RETVAL=$?
86			if test "x$RETVAL" != x0 ; then
87	jmc	1.7	echo
88			echo "Error building the mpack tools at: $MPACK_DIR"
89			if test -x $MPACK ; then
90			HAVE_MPACK=t
91			echo " use (old ?) executable:" ; ls -l $MPACK
92			else
93			HAVE_MPACK=f
94			fi
95	jmc	1.9	else
96	jmc	1.7	if test -x $MPACK ; then
97			rm -f TTT.build_mpack.$$
98			HAVE_MPACK=t
99			echo " building mpack: OK"
100			else
101			echo " $MPACK not executable"
102			HAVE_MPACK=f
103			fi
104	jmc	1.9	fi
105			echo
106
107			count=$nbtst
108	jmc	1.7	fi
109
110	jmc	1.9	#- when it's done, retrieve output and send e-mail
111	jmc	1.1	minutes=0
112			while test $count != 0 ; do
113
114	jmc	1.4	sleep 600
115			minutes=$(( $minutes + 10 ))
116	jmc	1.1
117			for i in $tst_list ; do
118
119			eval comm=\$M_$i
120			if test $comm = 'submitted' ; then
121			JOB="tst_"$i
122			ready_to_send=`$QSTAT -a \| grep $USER \| grep $JOB \| wc -l`
123
124			if test "x_$ready_to_send" = x_0 ; then
125	jmc	1.6	run_dir=${TST_DIR}"/MITgcm_"$i"/verification"
126	jmc	1.8	tdir=`ls -1 -t $run_dir \| grep -v tr_out \| grep '^tr_aces' \| head -1`
127			#- check this is the right output
128			chk=`echo $tdir \| grep -c $start`
129			if test $chk = '0' ; then
130			curday=`date +%Y%m%d`
131			chk=`echo $tdir \| grep -c $curday`
132			fi
133			if test "x$tdir" = x ; then
134			echo "Output not found so no email sent for $i"
135			elif test $chk = '0' ; then
136			echo "tdir='$tdir'"
137			echo "Output do not match so no email sent for $i"
138			else
139			rm -f "/tmp/tr_aces-"$i".tar.gz"
140			( cd $run_dir ; tar -czf "/tmp/tr_aces-"$i".tar.gz" ./$tdir )
141	jmc	1.7	if test "x$HAVE_MPACK" = xt ; then
142	jmc	1.3	$MPACK -s MITgcm-test -m 3555000 "/tmp/tr_aces-"$i".tar.gz" jmc@mitgcm.org
143	jmc	1.1	echo "Email sent for $i"
144	jmc	1.7	else
145			echo "no email sent for $i (no mpack)"
146			fi
147	jmc	1.1	fi
148			eval M_$i=done
149			count=`expr $count - 1`
150	jmc	1.4	chmod 644 output/tst_$i.std*
151	jmc	1.1	fi
152			fi
153			done
154
155			# "long" queue is 24hrs = 24*60min = 1440min
156	jmc	1.4	if test $minutes -gt 2160 ; then
157			hrs=$(( $minutes / 60 ));
158	jmc	1.1	echo "Time expired after $minutes minutes ($hrs hours)"
159			echo ' ' $count '/' $nbtst 'tests not yet finished'
160			exit 1
161			fi
162
163			done
164
165			echo "All $nbtst tests completed successfully."
166	jmc	1.4	echo -n '-- Finished: '
167			date
168	jmc	1.1