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jmc |
1.1 |
#!/bin/bash |
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# |
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#PBS -q four-twelve |
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#PBS -N tst_adm |
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#PBS -l nodes=2:ppn=2 |
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#PBS -e /home/jmc/test_ACES/output/tst_adm.stderr |
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#PBS -o /home/jmc/test_ACES/output/tst_adm.stdout |
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jmc |
1.5 |
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jmc |
1.10 |
# $Header: /u/gcmpack/MITgcm/tools/example_scripts/ACESgrid/aces_test_adm_mpi,v 1.9 2010/12/14 21:34:45 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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jmc |
1.5 |
# ACES-grid PBS-batch script for Adjoint MPI test using ifort (default=v8) & mpich |
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jmc |
1.4 |
if test -f /etc/profile.d/modules.sh ; then |
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. /etc/profile.d/modules.sh |
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fi |
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# Note: added "ulimit -s unlimited" in file "~/.bashrc" |
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jmc |
1.5 |
# to pass big test (the 2 fizhi-cs-* test & adjoint tests) with MPI |
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jmc |
1.4 |
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jmc |
1.1 |
umask 0022 |
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jmc |
1.4 |
#- to get case insensitive "ls" (and order of tested experiments) |
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export LC_ALL="en_US.UTF-8" |
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jmc |
1.7 |
TST_DIR="/home/jmc/test_ACES" |
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HERE=$TST_DIR/output |
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jmc |
1.1 |
#cd $HERE |
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sfx='adm' |
| 29 |
jmc |
1.5 |
module add mpich/intel |
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module add netcdf/3.6.1/icc |
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export MPI_INC_DIR='/usr/local/pkg/mpich/mpich-intel/include/' |
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OPTFILE="../tools/build_options/linux_ia32_ifort+mpi_aces" |
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#OPTFILE="$HERE/linux_ia32_ifort+mpi_aces" |
| 34 |
jmc |
1.10 |
options="-adm -do -MPI 4 -mf $PBS_NODEFILE" |
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EXE="mpirun -machinefile TR_MFILE -v -np TR_NPROC ./mitgcmuv_ad" |
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jmc |
1.1 |
#- need this to get "staf": |
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jmc |
1.2 |
export PATH="$PATH:$HOME/bin" |
| 38 |
jmc |
1.1 |
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| 39 |
jmc |
1.10 |
#- keep a copy of MPI_MFILE: |
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cp -p $PBS_NODEFILE $HERE"/mf_"$sfx |
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jmc |
1.1 |
checkOut=1 |
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#options="$options -nc" ; checkOut=0 |
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#options="$options -q" ; checkOut=0 |
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gcmDIR="MITgcm_$sfx" |
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cd $TST_DIR |
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#- check for disk space: |
| 49 |
jmc |
1.9 |
dsp=`df -P . | tail -1 | awk '{print $5}' | sed 's/%$//'` |
| 50 |
jmc |
1.1 |
if [ $dsp -gt 99 ] ; then |
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echo 'Not enough space on this disk => do not run testreport.' |
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df . |
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exit |
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fi |
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if [ $checkOut -eq 1 ] ; then |
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if test -d $gcmDIR/CVS ; then |
| 57 |
jmc |
1.6 |
/bin/rm -rf $gcmDIR/verification/tr_aces-${sfx}_????????_? |
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# ( cd $gcmDIR/verification ; ../tools/do_tst_2+2 -clean ) |
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jmc |
1.1 |
echo "cvs update of dir $gcmDIR :" |
| 60 |
jmc |
1.8 |
( cd $gcmDIR ; cvs -q -d :pserver:cvsanon@mitgcm.org:/u/gcmpack update -P -d ) 2>&1 |
| 61 |
jmc |
1.1 |
else |
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echo "no dir: $gcmDIR/CVS => try a fresh check-out" |
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checkOut=2 |
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fi |
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fi |
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if [ $checkOut -eq 2 ] ; then |
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if test -e $gcmDIR ; then |
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rm -rf $gcmDIR |
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fi |
| 70 |
jmc |
1.10 |
# cvs co MITgcm |
| 71 |
jmc |
1.1 |
cvs -d :pserver:cvsanon@mitgcm.org:/u/gcmpack co -P -d $gcmDIR MITgcm > /dev/null 2>&1 |
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/usr/bin/find $gcmDIR -type d | xargs chmod g+rxs |
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/usr/bin/find $gcmDIR -type f | xargs chmod g+r |
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else |
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if test -e $gcmDIR/verification ; then |
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echo "dir $gcmDIR/verification exist" |
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else |
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echo "no dir $gcmDIR/verification => exit" |
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exit |
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fi |
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fi |
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cd $gcmDIR/verification |
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echo ./testreport $options -of $OPTFILE -command \"$EXE\" -odir aces-$sfx |
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./testreport $options -of $OPTFILE -command "$EXE" -odir aces-$sfx |
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