/[MITgcm]/MITgcm/tools/do_tst_2+2

Diff of /MITgcm/tools/do_tst_2+2

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-revision 1.7 by jmc,
Thu Dec 16 20:15:21 2010 UTC
+revision 1.18 by jmc,
Sun Sep 22 23:37:12 2013 UTC
 Line 14 
 usage()
          echo "  -skd LIST_EXP : skip experiments in LIST_EXP"
          echo "  -exe  COMMAND : use COMMAND to run the tests"
          echo "  -mpi          : run the tests using MPI"
+         echo "  -mf    STRING :(MPI) file with list of possible machines to run on"
          echo "  -o     STRING : used to build output directory name"
          echo "                      (DEF=\"hostname\")"
          echo "  -a,-A  STRING : email address to send output to"
          echo "                      (DEF=\"\" no email is sent)"
          echo "                      (-A: + save each log file)"
+         echo "  -send  STRING : sending command (instead of using mpack)"
+         echo "  -sd    STRING : location to save output tar file to send (DEF='$SAVDIR')"
          echo "  -clean        : clean output & reset"
          exit
  }
-Line 27 
 CLEAN=0
+Line 30 
 CLEAN=0
  TESTDIRS=
  SKIPDIRS=
  SCRIPT='../tools/tst_2+2'
+ LOGFILE='tst_2+2_out.log'
  scrArg='All'
  COMMAND=
  mpi=0
+ MPI_MFILE=
  OUTDIR=`hostname | sed 's/\..*$//'`
  SAVELOG=0
  ADDRESS=
  MPACK="../tools/mpack-1.6/mpack"
+ SENDCMD=
+ SAVDIR='.'
  here=`pwd`
  yy=
  for xx
-Line 49 
 do
+Line 56 
 do
        -skd  ) yy=SKIPDIRS ;;
        -exe  ) yy=COMMAND ;;
        -mpi  ) mpi=1 ;;
+       -mf   ) yy=MPI_MFILE ;;
        -a    ) yy=ADDRESS ;;
        -A    ) yy=ADDRESS ; SAVELOG=1 ;;
+       -send ) yy=SENDCMD ;;
+       -sd   ) yy=SAVDIR ;;
        -o    ) yy=OUTDIR ;;
          *) echo "Error: unrecognized option: "$xx ; usage ; exit ;;
        esac
-Line 75 
 do
+Line 85 
 do
  done
  if test -x $SCRIPT ; then
-  echo "run script '$SCRIPT' for experiment in:"
+  if test $CLEAN = 1 ; then
+    echo "clean output from script '$SCRIPT' for experiment in:"
+  else
+    echo "run script '$SCRIPT' for experiment in:"
+  fi
   echo " $LIST"
+  echo ""
   yy=`echo $SCRIPT | grep -c '^\/'`
   if test $yy = 0 ; then SCRIPT="../../$SCRIPT" ; fi
  else
   echo "ERROR: script '$SCRIPT' not found or not executable"
   exit
  fi
- echo ""
  #------------------------
  if test $CLEAN = 1 ; then
-Line 95 
 if test $CLEAN = 1 ; then
+Line 109 
 if test $CLEAN = 1 ; then
      if test -r $xx/$yy/data.tst ; then
        echo "clean dir:" $xx/$yy
        cd $xx/$yy
-       echo ' ' >> outp.tst_2+2.log
+       echo ' ' >> $LOGFILE
-       echo $SCRIPT 4 >> outp.tst_2+2.log
+       echo $SCRIPT 4 >> $LOGFILE
-       $SCRIPT 4 >> outp.tst_2+2.log 2>&1
+       $SCRIPT 4 >> $LOGFILE 2>&1
        cd $here
      fi
    done
-Line 106 
 if test $CLEAN = 1 ; then
+Line 120 
 if test $CLEAN = 1 ; then
  fi
  #------------------------
  #  Create a uniquely named directory to store results
- DATE=`date +%Y%m%d`
+ CMDLINE=$0
+ for xx in "$@" ; do nw=`echo $xx | wc -w`
+     if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
+                         else CMDLINE="$CMDLINE '$xx'" ; fi
+ done
+ #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
+ DATE=''
+ if test -f tr_out.txt ; then
+ #  try to use the date corresponding to 'Start time:' in file "tr_out.txt" :
+   sTime=`grep '^Start time:  ' tr_out.txt 2>/dev/null | sed 's/Start time:  //'`
+   if test "x$sTime" != x ; then DATE=`date -d "$sTime" "+%Y%m%d" 2>/dev/null` ; fi
+ fi
+ #  otherwise, use current date:
+ if test "x$DATE" = x ; then DATE=`date +%Y%m%d`; fi
  BASE="rs_"$OUTDIR"_"$DATE"_"
  xx=0
  DRESULTS="$BASE$xx"
-Line 125 
 OPTFILE=
+Line 152 
 OPTFILE=
  printf "Start time:  " >  $SUMMARY
  date  >> $SUMMARY
+ echo 'run:' $CMDLINE >> $SUMMARY
  if test -f tr_out.txt ; then
   echo ' using output from:' >> $SUMMARY
-  sed -n '2,/OPTFILE/ p' tr_out.txt >> $SUMMARY
+  sed -n '2,/^  OPTFILE=/ p' tr_out.txt >> $SUMMARY
   echo >> $SUMMARY
  fi
  echo  'test 2+2=4 summary :' >> $SUMMARY
-Line 136 
 echo 'P. Run  Result     experiment'  >>
+Line 164 
 echo 'P. Run  Result     experiment'  >>
  echo '  1 2 3'  >> $SUMMARY
  #-- For MPI test:
+ LOC_MFILE='tr_mpi_mfile'
  RUNOUTP="output.txt"
  if [ $mpi -ge 1 ] ; then
    SCRIPT="$SCRIPT -mpi"
    RUNOUTP="STDOUT.0000"
+   if test "x$COMMAND" = x ; then COMMAND="mpirun -v -np TR_NPROC ./mitgcmuv" ; fi
  fi
  for xx in $LIST
  do
-   echo ==============================================================================
+   echo '------------------------------------------------------------------------------'
+   if [ $mpi -le 0 ] ; then
+     rCommand=$COMMAND
+   else
+     LOC_NPROC=2
+     mpi_size=$xx/build/SIZE.h.mpi
+     if test -f $mpi_size ; then
+       px=`grep '^     & *nPx *=' $mpi_size | sed 's/^     & *nPx *= *//' | sed 's/, *$//'`
+       py=`grep '^     & *nPy *=' $mpi_size | sed 's/^     & *nPy *= *//' | sed 's/, *$//'`
+       pp=`expr $px \* $py` > /dev/null 2>&1 ; out=$?
+       if test "x$out" = x0 ; then LOC_NPROC=$pp ; fi
+     fi
+     rCommand=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
+     if test "x$MPI_MFILE" != x ; then
+       #- create new MPI machine-file with the right number of Procs
+       rm -f $LOC_MFILE
+       cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
+       nl=`wc -l $LOC_MFILE | awk '{print $1}'`
+       if [ $nl -lt $LOC_NPROC ] ; then
+         rm -f $LOC_MFILE
+         cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
+       fi
+       rCommand=`echo $rCommand | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
+     fi
+   fi
    listD='run '`(cd $xx/results ; ls output.*.txt 2> /dev/null | sed 's/^output\./tr_run./g' | sed 's/\.txt$//g' )`
    for yy in $listD
    do
-Line 171 
 do
+Line 226 
 do
        else nam=$xx`echo $yy | sed 's/tr_run//'` ; fi
        echo -n "Entering $xx/$yy :"
        cd $xx/$yy
-       pwd > outp.tst_2+2.log
+       pwd > $LOGFILE
        if test "x$COMMAND" = x ; then
-         echo $SCRIPT $scrArg >> outp.tst_2+2.log ; echo ' ' >> outp.tst_2+2.log
+         echo $SCRIPT $scrArg >> $LOGFILE ; echo ' ' >> $LOGFILE
-         $SCRIPT $scrArg >> outp.tst_2+2.log 2>&1
+         $SCRIPT $scrArg >> $LOGFILE 2>&1
          out=$?
        else
-         echo "$SCRIPT $scrArg -command \"$COMMAND\"" >> outp.tst_2+2.log
+         echo "$SCRIPT $scrArg -command \"$rCommand\"" >> $LOGFILE
-         echo ' ' >> outp.tst_2+2.log
+         echo ' ' >> $LOGFILE
-         $SCRIPT $scrArg -command "$COMMAND" >> outp.tst_2+2.log 2>&1
+         $SCRIPT $scrArg -command "$rCommand" >> $LOGFILE 2>&1
          out=$?
        fi
        case $out in
-Line 194 
 do
+Line 249 
 do
        if test $out != '0' ; then
          echo " test 2+2=4 FAIL (exit $out)"
          echo " "
-         tail -5 outp.tst_2+2.log
+         tail -5 $LOGFILE
          echo " "
-         cp -p outp.tst_2+2.log ../../$DRESULTS/$nam.log
+         cp -p $LOGFILE ../../$DRESULTS/$nam.log
        elif test $SAVELOG = 1 ; then
-         cp -p outp.tst_2+2.log ../../$DRESULTS/$nam.log
+         cp -p $LOGFILE ../../$DRESULTS/$nam.log
        fi
        cd $here
      fi
    done
+   if test "x$mpi" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
  done
  printf "End time:    " >> $SUMMARY
  date >> $SUMMARY
- #  If address was supplied and mpack exist, then send email using mpack.
+ #  If address was supplied, then send email using Send-Command or mpack.
  if test "x$ADDRESS" != xNONE -a "x$ADDRESS" != x ; then
-     if test -x $MPACK ; then
+     if test "x$SENDCMD" = x ; then
-         tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
+       # if Send-Command is empty and mpack exist, then send email using mpack.
-             && gzip $DRESULTS".tar" \
+       if test -x $MPACK ; then SENDCMD=$MPACK
-             && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESS
+       else
+         echo "Warning: $MPACK is not executable => no email was sent"
+         echo
+       fi
+     fi
+     if test "x$SENDCMD" != x ; then
+         #echo " run: $SENDCMD -s MITgcm-test -m 3555000  ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESS"
+         tar -cf  ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
+             && gzip  ${SAVDIR}/${DRESULTS}".tar" \
+             && $SENDCMD -s MITgcm-test -m 3555000  ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESS
          out=$?
          if test "x$out" != x0 ; then
              echo
-Line 226 
 if test "x$ADDRESS" != xNONE -a "x$ADDRE
+Line 291 
 if test "x$ADDRESS" != xNONE -a "x$ADDRE
              echo "  \"$ADDRESS\""
              echo
          fi
-         test -f $DRESULTS".tar"  &&  rm -f $DRESULTS".tar"
+         test -f ${SAVDIR}/${DRESULTS}".tar" &&  rm -f ${SAVDIR}/${DRESULTS}".tar"
-         test -f $DRESULTS".tar.gz"  &&  rm -f $DRESULTS".tar.gz"
+         test -f ${SAVDIR}/${DRESULTS}".tar.gz" &&  rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
-     else
-         echo "Warning: $MPACK is not executable => no email was sent"
-         echo
      fi
  fi
-Line 241 
 cp -p $SUMMARY tst_2+2_out.txt
+Line 303 
 cp -p $SUMMARY tst_2+2_out.txt
  if test "x$ADDRESS" = x ; then
    rm -rf $DRESULTS
  fi

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