| 1 |
jmc |
1.2 |
#! /usr/bin/env bash |
| 2 |
jmc |
1.1 |
|
| 3 |
jmc |
1.17 |
# $Header: /u/gcmpack/MITgcm/tools/do_tst_2+2,v 1.16 2012/10/11 16:30:56 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
| 5 |
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| 6 |
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usage() |
| 7 |
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{ |
| 8 |
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echo "Usage: `basename $0` [OPTIONS]" |
| 9 |
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echo " -> perform test 2+2=4 for several experiments" |
| 10 |
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echo "" |
| 11 |
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echo "where possible OPTIONS are:" |
| 12 |
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echo " -help : print usage" |
| 13 |
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echo " -t LIST_EXP : only check experiments in LIST_EXP" |
| 14 |
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echo " -skd LIST_EXP : skip experiments in LIST_EXP" |
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jmc |
1.3 |
echo " -exe COMMAND : use COMMAND to run the tests" |
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echo " -mpi : run the tests using MPI" |
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jmc |
1.10 |
echo " -mf STRING :(MPI) file with list of possible machines to run on" |
| 18 |
jmc |
1.2 |
echo " -o STRING : used to build output directory name" |
| 19 |
jmc |
1.1 |
echo " (DEF=\"hostname\")" |
| 20 |
jmc |
1.2 |
echo " -a,-A STRING : email address to send output to" |
| 21 |
jmc |
1.1 |
echo " (DEF=\"\" no email is sent)" |
| 22 |
jmc |
1.2 |
echo " (-A: + save each log file)" |
| 23 |
jmc |
1.17 |
echo " -send STRING : sending command (instead of using mpack)" |
| 24 |
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echo " -sd STRING : location to save output tar file to send (DEF='$SAVDIR')" |
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jmc |
1.1 |
echo " -clean : clean output & reset" |
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exit |
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} |
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CLEAN=0 |
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TESTDIRS= |
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SKIPDIRS= |
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jmc |
1.3 |
SCRIPT='../tools/tst_2+2' |
| 33 |
jmc |
1.13 |
LOGFILE='tst_2+2_out.log' |
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jmc |
1.5 |
scrArg='All' |
| 35 |
jmc |
1.3 |
COMMAND= |
| 36 |
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mpi=0 |
| 37 |
jmc |
1.10 |
MPI_MFILE= |
| 38 |
jmc |
1.4 |
OUTDIR=`hostname | sed 's/\..*$//'` |
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jmc |
1.2 |
SAVELOG=0 |
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jmc |
1.1 |
ADDRESS= |
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MPACK="../tools/mpack-1.6/mpack" |
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jmc |
1.17 |
SENDCMD= |
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SAVDIR='.' |
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jmc |
1.1 |
here=`pwd` |
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yy= |
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for xx |
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do |
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if test -n "$yy"; then |
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eval "$yy=\$xx" |
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yy= |
| 51 |
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else |
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case $xx in |
| 53 |
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-help ) usage ;; |
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-clean) CLEAN=1 ;; |
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-t ) yy=TESTDIRS ;; |
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-skd ) yy=SKIPDIRS ;; |
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jmc |
1.3 |
-exe ) yy=COMMAND ;; |
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-mpi ) mpi=1 ;; |
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jmc |
1.10 |
-mf ) yy=MPI_MFILE ;; |
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jmc |
1.1 |
-a ) yy=ADDRESS ;; |
| 61 |
jmc |
1.2 |
-A ) yy=ADDRESS ; SAVELOG=1 ;; |
| 62 |
jmc |
1.17 |
-send ) yy=SENDCMD ;; |
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-sd ) yy=SAVDIR ;; |
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jmc |
1.1 |
-o ) yy=OUTDIR ;; |
| 65 |
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*) echo "Error: unrecognized option: "$xx ; usage ; exit ;; |
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esac |
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fi |
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done |
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#------------------------ |
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jmc |
1.2 |
if test "x$TESTDIRS" = x ; then TESTDIRS=`ls ` ; fi |
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jmc |
1.1 |
LIST="" |
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for xx in $TESTDIRS |
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do |
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yy=`echo $SKIPDIRS | grep -c $xx` |
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if test $yy = 0 ; then |
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jmc |
1.2 |
if test -f $xx/results/output.txt ; then |
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jmc |
1.1 |
LIST=${LIST}" "$xx |
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# else |
| 80 |
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# echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
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fi |
| 82 |
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# else |
| 83 |
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# echo ""; echo -n " -- skip \"$xx\" (excluded)" |
| 84 |
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fi |
| 85 |
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done |
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jmc |
1.16 |
if test -x $SCRIPT ; then |
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if test $CLEAN = 1 ; then |
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echo "clean output from script '$SCRIPT' for experiment in:" |
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else |
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echo "run script '$SCRIPT' for experiment in:" |
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fi |
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echo " $LIST" |
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echo "" |
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yy=`echo $SCRIPT | grep -c '^\/'` |
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if test $yy = 0 ; then SCRIPT="../../$SCRIPT" ; fi |
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else |
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echo "ERROR: script '$SCRIPT' not found or not executable" |
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exit |
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fi |
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jmc |
1.1 |
#------------------------ |
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jmc |
1.16 |
|
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jmc |
1.1 |
if test $CLEAN = 1 ; then |
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for xx in $LIST |
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do |
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listD='run '`(cd $xx/results ; ls output.*.txt 2> /dev/null | sed 's/^output\./tr_run./g' | sed 's/\.txt$//g' )` |
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for yy in $listD |
| 108 |
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do |
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jmc |
1.2 |
if test -r $xx/$yy/data.tst ; then |
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jmc |
1.1 |
echo "clean dir:" $xx/$yy |
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jmc |
1.2 |
cd $xx/$yy |
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jmc |
1.12 |
echo ' ' >> $LOGFILE |
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echo $SCRIPT 4 >> $LOGFILE |
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$SCRIPT 4 >> $LOGFILE 2>&1 |
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jmc |
1.1 |
cd $here |
| 116 |
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fi |
| 117 |
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done |
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done |
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exit |
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fi |
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#------------------------ |
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# Create a uniquely named directory to store results |
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jmc |
1.10 |
CMDLINE=$0 |
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for xx in "$@" ; do nw=`echo $xx | wc -w` |
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if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
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else CMDLINE="$CMDLINE '$xx'" ; fi |
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done |
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#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
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jmc |
1.14 |
DATE='' |
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if test -f tr_out.txt ; then |
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# try to use the date corresponding to 'Start time:' in file "tr_out.txt" : |
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sTime=`grep '^Start time: ' tr_out.txt 2>/dev/null | sed 's/Start time: //'` |
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if test "x$sTime" != x ; then DATE=`date -d "$sTime" "+%Y%m%d" 2>/dev/null` ; fi |
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fi |
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# otherwise, use current date: |
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if test "x$DATE" = x ; then DATE=`date +%Y%m%d`; fi |
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jmc |
1.1 |
BASE="rs_"$OUTDIR"_"$DATE"_" |
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xx=0 |
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DRESULTS="$BASE$xx" |
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while test -e $DRESULTS ; do |
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xx=$(( $xx + 1 )) |
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DRESULTS="$BASE$xx" |
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done |
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mkdir $DRESULTS |
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out=$? |
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if test "x$out" != x0 ; then |
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echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
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exit 1 |
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fi |
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SUMMARY="$DRESULTS/summary.txt" |
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OPTFILE= |
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printf "Start time: " > $SUMMARY |
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date >> $SUMMARY |
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jmc |
1.10 |
echo 'run:' $CMDLINE >> $SUMMARY |
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jmc |
1.1 |
if test -f tr_out.txt ; then |
| 157 |
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echo ' using output from:' >> $SUMMARY |
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jmc |
1.11 |
sed -n '2,/^ OPTFILE=/ p' tr_out.txt >> $SUMMARY |
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jmc |
1.1 |
echo >> $SUMMARY |
| 160 |
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fi |
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echo 'test 2+2=4 summary :' >> $SUMMARY |
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echo >> $SUMMARY |
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echo 'P. Run Result experiment' >> $SUMMARY |
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echo ' 1 2 3' >> $SUMMARY |
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jmc |
1.3 |
#-- For MPI test: |
| 167 |
jmc |
1.10 |
LOC_MFILE='tr_mpi_mfile' |
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jmc |
1.3 |
RUNOUTP="output.txt" |
| 169 |
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if [ $mpi -ge 1 ] ; then |
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SCRIPT="$SCRIPT -mpi" |
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RUNOUTP="STDOUT.0000" |
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fi |
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jmc |
1.1 |
for xx in $LIST |
| 175 |
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do |
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jmc |
1.15 |
echo '------------------------------------------------------------------------------' |
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jmc |
1.10 |
if [ $mpi -le 0 ] ; then |
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rCommand=$COMMAND |
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else |
| 180 |
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LOC_NPROC=2 |
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jmc |
1.8 |
mpi_size=$xx/build/SIZE.h.mpi |
| 182 |
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if test -f $mpi_size ; then |
| 183 |
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px=`grep '^ & *nPx *=' $mpi_size | sed 's/^ & *nPx *= *//' | sed 's/, *$//'` |
| 184 |
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py=`grep '^ & *nPy *=' $mpi_size | sed 's/^ & *nPy *= *//' | sed 's/, *$//'` |
| 185 |
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pp=`expr $px \* $py` > /dev/null 2>&1 ; out=$? |
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jmc |
1.10 |
if test "x$out" = x0 ; then LOC_NPROC=$pp ; fi |
| 187 |
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fi |
| 188 |
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rCommand=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"` |
| 189 |
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if test "x$MPI_MFILE" != x ; then |
| 190 |
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#- create new MPI machine-file with the right number of Procs |
| 191 |
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rm -f $LOC_MFILE |
| 192 |
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cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE |
| 193 |
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nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
| 194 |
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if [ $nl -lt $LOC_NPROC ] ; then |
| 195 |
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rm -f $LOC_MFILE |
| 196 |
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cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE |
| 197 |
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fi |
| 198 |
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rCommand=`echo $rCommand | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"` |
| 199 |
jmc |
1.8 |
fi |
| 200 |
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fi |
| 201 |
jmc |
1.10 |
|
| 202 |
jmc |
1.1 |
listD='run '`(cd $xx/results ; ls output.*.txt 2> /dev/null | sed 's/^output\./tr_run./g' | sed 's/\.txt$//g' )` |
| 203 |
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for yy in $listD |
| 204 |
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do |
| 205 |
jmc |
1.3 |
if test -f $xx/$yy/$RUNOUTP ; then |
| 206 |
jmc |
1.1 |
if test "x$OPTFILE" = x -a -f $xx/build/Makefile ; then |
| 207 |
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comm=`grep '^# OPTFILE=' $xx/build/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
| 208 |
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echo "from '$xx/build/Makefile', extract:" > $DRESULTS/genmake_state |
| 209 |
jmc |
1.6 |
sed -n '/^# executed by:/,+1 p' $xx/build/Makefile >> $DRESULTS/genmake_state |
| 210 |
jmc |
1.7 |
echo " $comm" >> $DRESULTS/genmake_state |
| 211 |
jmc |
1.1 |
eval $comm |
| 212 |
jmc |
1.7 |
gmkLog=$xx/build/genmake.log |
| 213 |
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grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1 |
| 214 |
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out=$? |
| 215 |
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if test "x$out" = x0 ; then |
| 216 |
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echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state |
| 217 |
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sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \ |
| 218 |
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| grep -v '^... compiler version ' > tr_vers.tmp_log |
| 219 |
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sed -n '1,/^$/p' tr_vers.tmp_log | sed '/^$/d' | sed 's/^./ &/' \ |
| 220 |
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>> $DRESULTS/genmake_state |
| 221 |
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rm -f tr_vers.tmp_log |
| 222 |
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fi |
| 223 |
jmc |
1.1 |
fi |
| 224 |
jmc |
1.2 |
if test $yy = 'run' ; then nam=$xx |
| 225 |
jmc |
1.1 |
else nam=$xx`echo $yy | sed 's/tr_run//'` ; fi |
| 226 |
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echo -n "Entering $xx/$yy :" |
| 227 |
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cd $xx/$yy |
| 228 |
jmc |
1.12 |
pwd > $LOGFILE |
| 229 |
jmc |
1.3 |
if test "x$COMMAND" = x ; then |
| 230 |
jmc |
1.12 |
echo $SCRIPT $scrArg >> $LOGFILE ; echo ' ' >> $LOGFILE |
| 231 |
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$SCRIPT $scrArg >> $LOGFILE 2>&1 |
| 232 |
jmc |
1.3 |
out=$? |
| 233 |
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else |
| 234 |
jmc |
1.12 |
echo "$SCRIPT $scrArg -command \"$rCommand\"" >> $LOGFILE |
| 235 |
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echo ' ' >> $LOGFILE |
| 236 |
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$SCRIPT $scrArg -command "$rCommand" >> $LOGFILE 2>&1 |
| 237 |
jmc |
1.3 |
out=$? |
| 238 |
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fi |
| 239 |
jmc |
1.1 |
case $out in |
| 240 |
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0 ) echo ' pass test 2+2=4' |
| 241 |
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echo "Y Y Y Y pass <- $nam" >> ../../$SUMMARY ;; |
| 242 |
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4|5) echo "Y Y Y Y FAIL ($out) - $nam" >> ../../$SUMMARY ;; |
| 243 |
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3 ) echo "Y Y Y N FAIL ($out) - $nam" >> ../../$SUMMARY ;; |
| 244 |
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2 ) echo "Y Y N N FAIL ($out) - $nam" >> ../../$SUMMARY ;; |
| 245 |
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1 ) echo "Y N N N FAIL ($out) - $nam" >> ../../$SUMMARY ;; |
| 246 |
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* ) echo "N N N N FAIL ($out) - $nam" >> ../../$SUMMARY ;; |
| 247 |
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esac |
| 248 |
jmc |
1.2 |
if test $out != '0' ; then |
| 249 |
jmc |
1.1 |
echo " test 2+2=4 FAIL (exit $out)" |
| 250 |
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echo " " |
| 251 |
jmc |
1.12 |
tail -5 $LOGFILE |
| 252 |
jmc |
1.1 |
echo " " |
| 253 |
jmc |
1.12 |
cp -p $LOGFILE ../../$DRESULTS/$nam.log |
| 254 |
jmc |
1.2 |
elif test $SAVELOG = 1 ; then |
| 255 |
jmc |
1.12 |
cp -p $LOGFILE ../../$DRESULTS/$nam.log |
| 256 |
jmc |
1.1 |
fi |
| 257 |
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cd $here |
| 258 |
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fi |
| 259 |
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done |
| 260 |
jmc |
1.10 |
if test "x$mpi" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi |
| 261 |
jmc |
1.1 |
done |
| 262 |
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printf "End time: " >> $SUMMARY |
| 263 |
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date >> $SUMMARY |
| 264 |
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| 265 |
jmc |
1.17 |
# If address was supplied, then send email using Send-Command or mpack. |
| 266 |
jmc |
1.1 |
if test "x$ADDRESS" != xNONE -a "x$ADDRESS" != x ; then |
| 267 |
jmc |
1.17 |
if test "x$SENDCMD" = x ; then |
| 268 |
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# if Send-Command is empty and mpack exist, then send email using mpack. |
| 269 |
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if test -x $MPACK ; then SENDCMD=$MPACK |
| 270 |
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else |
| 271 |
|
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echo "Warning: $MPACK is not executable => no email was sent" |
| 272 |
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echo |
| 273 |
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fi |
| 274 |
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fi |
| 275 |
|
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if test "x$SENDCMD" != x ; then |
| 276 |
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#echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESS" |
| 277 |
|
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tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \ |
| 278 |
|
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&& gzip ${SAVDIR}/${DRESULTS}".tar" \ |
| 279 |
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&& $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESS |
| 280 |
jmc |
1.1 |
out=$? |
| 281 |
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if test "x$out" != x0 ; then |
| 282 |
|
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echo |
| 283 |
|
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echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
| 284 |
|
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echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
| 285 |
|
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echo " summary of results from the directory \"$DRESULTS\"." |
| 286 |
|
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echo |
| 287 |
|
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else |
| 288 |
|
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echo |
| 289 |
|
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echo "An email containing results was sent to the following address:" |
| 290 |
|
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echo " \"$ADDRESS\"" |
| 291 |
|
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echo |
| 292 |
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fi |
| 293 |
jmc |
1.17 |
test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar" |
| 294 |
|
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test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz" |
| 295 |
jmc |
1.1 |
fi |
| 296 |
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fi |
| 297 |
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| 298 |
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# save output and remove output Dir (if no address was provided) |
| 299 |
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# note: to keep the output Dir without sending email, use option "-a NONE" |
| 300 |
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if test -f tst_2+2_out.txt ; then mv -f tst_2+2_out.txt tst_2+2_out.old ; fi |
| 301 |
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cp -p $SUMMARY tst_2+2_out.txt |
| 302 |
|
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if test "x$ADDRESS" = x ; then |
| 303 |
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rm -rf $DRESULTS |
| 304 |
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fi |
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