--- MITgcm/tools/adjoint_options/adjoint_state_final	2005/07/28 13:55:17	1.4
+++ MITgcm/tools/adjoint_options/adjoint_state_final	2008/06/20 21:43:19	1.9
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_state_final,v 1.4 2005/07/28 13:55:17 heimbach Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_state_final,v 1.9 2008/06/20 21:43:19 heimbach Exp $
 #  $Name:  $
 #
 
@@ -19,11 +19,11 @@
 LIBS="${LIBS} -larpack"
 
 AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-AD_TAF_FLAGS='-reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
+AD_TAF_FLAGS='-reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log'
 FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
+FTL_TAF_FLAGS='-forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log'
 SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
+SVD_TAF_FLAGS='-reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log'
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -36,6 +36,14 @@
                     xx_atemp_dummy       \
                     xx_aqh_dummy         \
                     xx_precip_dummy      \
+                    xx_swflux_dummy      \
+                    xx_swdown_dummy      \
+                    xx_lwflux_dummy      \
+                    xx_lwdown_dummy      \
+                    xx_evap_dummy        \
+                    xx_snowprecip_dummy  \
+                    xx_apressure_dummy   \
+                    xx_runoff_dummy      \
                     xx_uwind_dummy       \
                     xx_vwind_dummy       \
                     xx_obcsn_dummy       \
@@ -46,6 +54,8 @@
                     xx_sss_dummy         \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
+                    xx_kapredi_dummy       \
+                    xx_bottomdrag_dummy  \
                     xx_efluxy_dummy      \
                     xx_efluxp_dummy      \
                     xx_edtaux_dummy      \