#!/bin/bash
#
#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_state_final,v 1.17 2013/08/09 18:28:36 jmc Exp $
#  $Name:  $

#  This file is a template for SVD-type calculations
#  where a vector-valued cost function (-dependent) is used,
#  representing the final state (e.g. theta, salt or SST, SSS)
#  Also, the ARPACK library is included via LIBS=-larpack
#  heimbach@mit.edu

# TAMC=/data43/ralf/tamc/tamc
# TAF=~fastopt/bin/taf
# STAF=staf

TAF=staf
TAMC=tamc
LIBS="${LIBS} -larpack"

AD_TAMC_FLAGS="-reverse -admark ad -i4 -r4 -l tamc_ad.log $AD_TAMC_FLAGS"
FTL_TAMC_FLAGS="-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log $FTL_TAMC_FLAGS"
SVD_TAMC_FLAGS="-reverse -forward -pure -i4 -r4 -l tamc_svd.log $SVD_TAMC_FLAGS"

AD_TAF_FLAGS="-reverse -i4 -r4 -intrinsic system,flush -l taf_ad.log $AD_TAF_FLAGS"
FTL_TAF_FLAGS="-forward -i4 -r4 -intrinsic system,flush -l taf_ftl.log $FTL_TAF_FLAGS"
SVD_TAF_FLAGS="-reverse -forward -pure -i4 -r4 -intrinsic system,flush -l taf_svd.log $SVD_TAF_FLAGS"

#- in case we need to show some MPI code to TAF:
#if test "x$MPI" != x ; then
#  AD_TAF_FLAGS="$AD_TAF_FLAGS"' -mpi -include $(LOCAL_MPI_HEADERS) -I./mpi_headers/'
#  FLT_TAF_FLAGS="$FLT_TAF_FLAGS"' -mpi -include $(LOCAL_MPI_HEADERS) -I./mpi_headers/'
#  SVD_TAF_FLAGS="$SVD_TAF_FLAGS"' -mpi -include $(LOCAL_MPI_HEADERS) -I./mpi_headers/'
#fi

DIFF_FLAGS="-toplevel 'the_main_loop'    \
            -input 'xx_theta_dummy       \
                    xx_salt_dummy        \
                    xx_tr1_dummy         \
                    xx_hflux_dummy       \
                    xx_sflux_dummy       \
                    xx_tauu_dummy        \
                    xx_tauv_dummy        \
                    xx_atemp_dummy       \
                    xx_aqh_dummy         \
                    xx_precip_dummy      \
                    xx_swflux_dummy      \
                    xx_swdown_dummy      \
                    xx_lwflux_dummy      \
                    xx_lwdown_dummy      \
                    xx_evap_dummy        \
                    xx_snowprecip_dummy  \
                    xx_apressure_dummy   \
                    xx_runoff_dummy      \
                    xx_uwind_dummy       \
                    xx_vwind_dummy       \
                    xx_obcsn_dummy       \
                    xx_obcss_dummy       \
                    xx_obcsw_dummy       \
                    xx_obcse_dummy       \
                    xx_sst_dummy         \
                    xx_sss_dummy         \
                    xx_depth_dummy       \
                    xx_diffkr_dummy      \
                    xx_kapgm_dummy       \
                    xx_kapredi_dummy     \
                    xx_bottomdrag_dummy  \
                    xx_efluxy_dummy      \
                    xx_efluxp_dummy      \
                    xx_edtaux_dummy      \
                    xx_edtauy_dummy      \
                    xx_uvel_dummy        \
                    xx_vvel_dummy        \
                    xx_etan_dummy        \
                    xx_gen2d_dummy       \
                    xx_gen3d_dummy       \
                    xx_genarr2d_dummy    \
                    xx_genarr3d_dummy    \
                    xx_gentim2d_dummy    \
                    xx_siarea_dummy      \
                    xx_siheff_dummy      \
                    xx_sihsnow_dummy     \
                    xx_shifwflx_dummy    \
                    xx_relaxsst_dummy    \
                    xx_relaxsss_dummy    \
                    xx_atemp_mean_dummy  \
                    xx_aqh_mean_dummy    \
                    xx_precip_mean_dummy \
                    xx_swdown_mean_dummy \
                    xx_uwind_mean_dummy  \
                    xx_vwind_mean_dummy' \
            -output 'objf_state_final'"

AD_TAMC_FLAGS="$AD_TAMC_FLAGS $DIFF_FLAGS"
AD_TAF_FLAGS="$AD_TAF_FLAGS   $DIFF_FLAGS"

FTL_TAMC_FLAGS="$FTL_TAMC_FLAGS $DIFF_FLAGS"
FTL_TAF_FLAGS="$FTL_TAF_FLAGS   $DIFF_FLAGS"

SVD_TAMC_FLAGS="$SVD_TAMC_FLAGS $DIFF_FLAGS"
SVD_TAF_FLAGS="$SVD_TAF_FLAGS   $DIFF_FLAGS"