--- MITgcm/tools/adjoint_options/adjoint_staf_mpi	2005/07/28 19:54:06	1.3
+++ MITgcm/tools/adjoint_options/adjoint_staf_mpi	2008/02/02 02:30:43	1.9
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf_mpi,v 1.3 2005/07/28 19:54:06 heimbach Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf_mpi,v 1.9 2008/02/02 02:30:43 gforget Exp $
 #  $Name:  $
 #
 
@@ -16,11 +16,11 @@
 TAMC=tamc
 
 AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-AD_TAF_FLAGS="-mpi -include './mpi_headers/mpif_parameters.h ./mpi_headers/mpif.h ./mpi_headers/mpiof.h' -I./mpi_headers/ -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg"
+AD_TAF_FLAGS="-z -mpi -include './mpi_headers/mpif_parameters.h ./mpi_headers/mpif.h ./mpi_headers/mpiof.h' -I./mpi_headers/ -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg"
 FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
+FTL_TAF_FLAGS='-z -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
 SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
+SVD_TAF_FLAGS='-z -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -34,6 +34,13 @@
                     xx_aqh_dummy         \
                     xx_precip_dummy      \
                     xx_swflux_dummy      \
+                    xx_swdown_dummy      \
+                    xx_lwflux_dummy      \
+                    xx_lwdown_dummy      \
+                    xx_evap_dummy        \
+                    xx_snowprecip_dummy  \
+                    xx_apressure_dummy   \
+                    xx_runoff_dummy      \
                     xx_uwind_dummy       \
                     xx_vwind_dummy       \
                     xx_obcsn_dummy       \
@@ -42,10 +49,23 @@
                     xx_obcse_dummy       \
                     xx_sst_dummy         \
                     xx_sss_dummy         \
+                    xx_depth_dummy       \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
+                    xx_kapredi_dummy       \
+                    xx_bottomdrag_dummy  \
                     xx_efluxy_dummy      \
-                    xx_efluxp_dummy'     \
+                    xx_efluxp_dummy      \
+                    xx_edtaux_dummy      \
+                    xx_edtauy_dummy      \
+                    xx_uvel_dummy        \
+                    xx_vvel_dummy        \
+                    xx_etan_dummy        \
+                    xx_siarea_dummy        \
+                    xx_siheff_dummy        \
+                    xx_sihsnow_dummy        \
+                    xx_relaxsst_dummy    \
+                    xx_relaxsss_dummy'     \
             -output 'fc'"
 
 AD_TAMC_FLAGS="$AD_TAMC_FLAGS $DIFF_FLAGS"