--- MITgcm/tools/adjoint_options/adjoint_staf	2006/10/27 05:16:54	1.9
+++ MITgcm/tools/adjoint_options/adjoint_staf	2009/06/19 21:26:22	1.13
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf,v 1.9 2006/10/27 05:16:54 heimbach Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf,v 1.13 2009/06/19 21:26:22 ce107 Exp $
 #  $Name:  $
 #
 
@@ -16,11 +16,11 @@
 TAMC=tamc
 
 AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-AD_TAF_FLAGS='-z -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
+AD_TAF_FLAGS='  -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log'
 FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-z -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
+FTL_TAF_FLAGS='  -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log'
 SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-z -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
+SVD_TAF_FLAGS='  -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log'
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -52,6 +52,8 @@
                     xx_depth_dummy       \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
+                    xx_kapredi_dummy       \
+                    xx_bottomdrag_dummy  \
                     xx_efluxy_dummy      \
                     xx_efluxp_dummy      \
                     xx_edtaux_dummy      \
@@ -59,6 +61,9 @@
                     xx_uvel_dummy        \
                     xx_vvel_dummy        \
                     xx_etan_dummy        \
+                    xx_siarea_dummy        \
+                    xx_siheff_dummy        \
+                    xx_sihsnow_dummy        \
                     xx_relaxsst_dummy    \
                     xx_relaxsss_dummy'     \
             -output 'fc'"