--- MITgcm/tools/adjoint_options/adjoint_staf	2003/11/29 19:55:46	1.1
+++ MITgcm/tools/adjoint_options/adjoint_staf	2006/06/07 01:20:27	1.8
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf,v 1.1 2003/11/29 19:55:46 edhill Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/Attic/adjoint_staf,v 1.8 2006/06/07 01:20:27 heimbach Exp $
 #  $Name:  $
 #
 
@@ -16,11 +16,11 @@
 TAMC=tamc
 
 AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-AD_TAF_FLAGS='-reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
+AD_TAF_FLAGS='-z -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
 FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
+FTL_TAF_FLAGS='-z -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
 SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
+SVD_TAF_FLAGS='-z -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -32,6 +32,9 @@
                     xx_tauv_dummy        \
                     xx_atemp_dummy       \
                     xx_aqh_dummy         \
+                    xx_precip_dummy      \
+                    xx_swflux_dummy      \
+                    xx_swdown_dummy      \
                     xx_uwind_dummy       \
                     xx_vwind_dummy       \
                     xx_obcsn_dummy       \
@@ -40,10 +43,18 @@
                     xx_obcse_dummy       \
                     xx_sst_dummy         \
                     xx_sss_dummy         \
+                    xx_depth_dummy       \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
                     xx_efluxy_dummy      \
-                    xx_efluxp_dummy'     \
+                    xx_efluxp_dummy      \
+                    xx_edtaux_dummy      \
+                    xx_edtauy_dummy      \
+                    xx_uvel_dummy        \
+                    xx_vvel_dummy        \
+                    xx_etan_dummy        \
+                    xx_relaxsst_dummy    \
+                    xx_relaxsss_dummy'     \
             -output 'fc'"
 
 AD_TAMC_FLAGS="$AD_TAMC_FLAGS $DIFF_FLAGS"