--- MITgcm/tools/adjoint_options/adjoint_default	2005/07/28 13:55:17	1.8
+++ MITgcm/tools/adjoint_options/adjoint_default	2007/06/21 04:06:21	1.14
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_default,v 1.8 2005/07/28 13:55:17 heimbach Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_default,v 1.14 2007/06/21 04:06:21 heimbach Exp $
 #  $Name:  $
 #
 
@@ -12,15 +12,15 @@
 # TAF=~fastopt/bin/taf
 # STAF=staf
 
-TAF=taf
+TAF=staf
 TAMC=tamc
 
 AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-AD_TAF_FLAGS='-reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
+AD_TAF_FLAGS='-z -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log -nonew_arg'
 FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
+FTL_TAF_FLAGS='-z -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log -nonew_arg'
 SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
+SVD_TAF_FLAGS='-z -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log -nonew_arg'
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -33,6 +33,14 @@
                     xx_atemp_dummy       \
                     xx_aqh_dummy         \
                     xx_precip_dummy      \
+                    xx_swflux_dummy      \
+                    xx_swdown_dummy      \
+                    xx_lwflux_dummy      \
+                    xx_lwdown_dummy      \
+                    xx_evap_dummy        \
+                    xx_snowprecip_dummy  \
+                    xx_apressure_dummy   \
+                    xx_runoff_dummy      \
                     xx_uwind_dummy       \
                     xx_vwind_dummy       \
                     xx_obcsn_dummy       \
@@ -41,6 +49,7 @@
                     xx_obcse_dummy       \
                     xx_sst_dummy         \
                     xx_sss_dummy         \
+                    xx_depth_dummy       \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
                     xx_efluxy_dummy      \
@@ -50,6 +59,9 @@
                     xx_uvel_dummy        \
                     xx_vvel_dummy        \
                     xx_etan_dummy        \
+                    xx_siarea_dummy        \
+                    xx_siheff_dummy        \
+                    xx_sihsnow_dummy        \
                     xx_relaxsst_dummy    \
                     xx_relaxsss_dummy'   \
             -output 'fc'"