--- MITgcm/tools/adjoint_options/adjoint_default	2008/06/20 21:43:19	1.19
+++ MITgcm/tools/adjoint_options/adjoint_default	2011/12/02 19:24:41	1.25
@@ -1,6 +1,6 @@
 #!/bin/bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_default,v 1.19 2008/06/20 21:43:19 heimbach Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/adjoint_options/adjoint_default,v 1.25 2011/12/02 19:24:41 heimbach Exp $
 #  $Name:  $
 #
 
@@ -15,13 +15,12 @@
 TAF=staf
 TAMC=tamc
 
-AD_TAMC_FLAGS='-reverse -admark ad -i4 -r4 -l tamc_ad.log'
-#AD_TAF_FLAGS='-z -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log'
-AD_TAF_FLAGS="-z -reverse -admark ad -i4 -r4 -l taf_ad.log -flow taf_ad_flow.log $AD_TAF_FLAGS"
-FTL_TAMC_FLAGS='-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log'
-FTL_TAF_FLAGS='-z -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log -flow taf_ftl_flow.log'
-SVD_TAMC_FLAGS='-reverse -forward -pure -i4 -r4 -l tamc_svd.log'
-SVD_TAF_FLAGS='-z -reverse -forward -pure -i4 -r4 -l taf_svd.log -flow taf_flow.log'
+AD_TAMC_FLAGS="-reverse -admark ad -i4 -r4 -l tamc_ad.log $AD_TAMC_FLAGS"
+AD_TAF_FLAGS="-v1 -reverse -admark ad -i4 -r4 -l taf_ad.log $AD_TAF_FLAGS"
+FTL_TAMC_FLAGS="-forward -ftlmark g_ -i4 -r4 -l tamc_ftl.log $FTL_TAMC_FLAGS"
+FTL_TAF_FLAGS="-v1 -forward -ftlmark g_ -i4 -r4 -l taf_ftl.log $FTL_TAF_FLAGS"
+SVD_TAMC_FLAGS="-reverse -forward -pure -i4 -r4 -l tamc_svd.log $SVD_TAMC_FLAGS"
+SVD_TAF_FLAGS="-v1 -reverse -forward -pure -i4 -r4 -l taf_svd.log $SVD_TAF_FLAGS"
 
 DIFF_FLAGS="-toplevel 'the_main_loop'    \
             -input 'xx_theta_dummy       \
@@ -53,7 +52,7 @@
                     xx_depth_dummy       \
                     xx_diffkr_dummy      \
                     xx_kapgm_dummy       \
-                    xx_kapredi_dummy       \
+                    xx_kapredi_dummy     \
                     xx_bottomdrag_dummy  \
                     xx_efluxy_dummy      \
                     xx_efluxp_dummy      \
@@ -62,9 +61,10 @@
                     xx_uvel_dummy        \
                     xx_vvel_dummy        \
                     xx_etan_dummy        \
-                    xx_siarea_dummy        \
-                    xx_siheff_dummy        \
-                    xx_sihsnow_dummy        \
+                    xx_siarea_dummy      \
+                    xx_siheff_dummy      \
+                    xx_sihsnow_dummy     \
+                    xx_shifwflx_dummy    \
                     xx_relaxsst_dummy    \
                     xx_relaxsss_dummy'   \
             -output 'fc'"