tools/adjoint_options/README.patch

07-August-2013
Michael Vossbeck <Michael.Vossbeck@fastopt.com>
Patrick Heimbach <heimbach@mit.edu>

Background:
------------------------------
Building the adjoint/tangent linear codes of the MITgcm has been restricted to TAF version 2.3.8 since 3 April 2013 (checkpoint64g). On August 6th/7th MITgcm has been updated to be compliant with TAF default behavior ("-v2") and up-to-date TAF version (TAF-2.5.4 as of August 7) when generating adjont/tangent linear code).

Users who check out a fresh copy of MITgcm or perform an update from the repository will automatically receive all required changes. For those users wanting to stick to a specific (older) version of MITgcm, but also seek to use a more recent TAF version, a patch file, MITgcm-TAFv2.patch, is provided. Note however, that MIT does not provide further support regarding this patch.

In case, your local copy of MITgcm does not contain any differences in the list of affected files below, there is a fair chance to successfully apply this patch and get your local copy of MITgcm running with the current TAF version. 

To apply the patch, place the patch file into your toplevel directory of MITgcm, switch to that directory, and enter the following command:

patch -Np1 < MITgcm-TAFv2.patch


Affected files:
------------------------------
eesupp/src/exch1_ad.flow
pkg/cost/cost_ad.flow
pkg/autodiff/model_ad.flow
pkg/autodiff/system.flow
pkg/autodiff/autodiff_whtapeio_sync.flow
pkg/autodiff/common.flow
tools/genmake2
tools/adjoint_options/adjoint_diva
tools/adjoint_options/adjoint_diva_mpi
tools/adjoint_options/adjoint_default
tools/adjoint_options/adjoint_state_final
tools/adjoint_options/adjoint_tamc_compatibility
tools/adjoint_options/adjoint_f95
tools/adjoint_options/adjoint_default_mpi
verification/bottom_ctrl_5x5/code_ad/ad_optfile.local
verification/tutorial_global_oce_optim/code_ad/ad_optfile.local
verification/tutorial_dic_adjoffline/code_ad/ad_optfile.local
1	heimbach	1.1	07-August-2013
2			Michael Vossbeck <Michael.Vossbeck@fastopt.com>
3			Patrick Heimbach <heimbach@mit.edu>
4
5			Background:
6			------------------------------
7			Building the adjoint/tangent linear codes of the MITgcm has been restricted to TAF version 2.3.8 since 3 April 2013 (checkpoint64g). On August 6th/7th MITgcm has been updated to be compliant with TAF default behavior ("-v2") and up-to-date TAF version (TAF-2.5.4 as of August 7) when generating adjont/tangent linear code).
8
9			Users who check out a fresh copy of MITgcm or perform an update from the repository will automatically receive all required changes. For those users wanting to stick to a specific (older) version of MITgcm, but also seek to use a more recent TAF version, a patch file, MITgcm-TAFv2.patch, is provided. Note however, that MIT does not provide further support regarding this patch.
10
11			In case, your local copy of MITgcm does not contain any differences in the list of affected files below, there is a fair chance to successfully apply this patch and get your local copy of MITgcm running with the current TAF version.
12
13			To apply the patch, place the patch file into your toplevel directory of MITgcm, switch to that directory, and enter the following command:
14
15			patch -Np1 < MITgcm-TAFv2.patch
16
17
18			Affected files:
19			------------------------------
20			eesupp/src/exch1_ad.flow
21			pkg/cost/cost_ad.flow
22			pkg/autodiff/model_ad.flow
23			pkg/autodiff/system.flow
24			pkg/autodiff/autodiff_whtapeio_sync.flow
25			pkg/autodiff/common.flow
26			tools/genmake2
27			tools/adjoint_options/adjoint_diva
28			tools/adjoint_options/adjoint_diva_mpi
29			tools/adjoint_options/adjoint_default
30			tools/adjoint_options/adjoint_state_final
31			tools/adjoint_options/adjoint_tamc_compatibility
32			tools/adjoint_options/adjoint_f95
33			tools/adjoint_options/adjoint_default_mpi
34			verification/bottom_ctrl_5x5/code_ad/ad_optfile.local
35			verification/tutorial_global_oce_optim/code_ad/ad_optfile.local
36			verification/tutorial_dic_adjoffline/code_ad/ad_optfile.local