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o fix MNC/MDSIO flags in PTRACERS so that (1) it works, and (2) its ready to be documented during the 20050801 DocFest
o for mnc output, fill the 'T' coordinate var with myTime and create a separate 'iter' variable for iteration count
remove "baseTime" (no used) from arg. list of DIFF_BASE_MULTIPLE and rename it: DIFFERENT_MULTIPLE
use baseTime as time origin ; DIFF_BASE_MULTIPLE replaces DIFFERENT_MULTIPLE
o more CF compliance: convert all MNC 'iter' variables to 'T' so that it becomes the coordinate variable for the 'T' dimension
o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that is called from DO_THE_MODEL_IO - rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE - introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq) - clean up PTRACERS_WRITE_TIMEAVE a little
o move useMNC and related runtime switches to PARAMS.h
o fixes for passing scalars to mnc_cw_*
o overhaul of IO so that we now have flags for MDSIO and/or MNC - all verification tests compile and run with linux_ia32_g77 - defaults are compatible with current input files--nothing should change if you were not previously using MNC - MNC output has been added in numerous places (eg. timeave) but there are still a few writes not yet do-able with MNC (this is in progress) - flags now allow for either/or/both use of MDSIO and MNC and documentation will soon follow - numerous small formatting cleanups for ProTeX
o first steps towards MNC-ification of PTRACERS - compiles and runs with linux_ia32_g77 - only outputs instantaneous tracer fields (so far!)
max number of passive tracers is now defined in PTRACERS_SIZE.h
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation of tracer Green's fucntions for ocean inversion project.
Added PTRACERS package This allows an arbitrary number of passive tracers to be integrated forward simultaneously with the dynamicaly model. + Implemented so far: - basic forward algorithm (time-stepping, advection, diffusion, convection) - I/O and checkpointing - GM/Redi *but* using the GM/Redi coefficient of Salt + Not implemented so far: - KPP - OBCS + No specific example supplied (yet) but global_ocean.90x40x15 has the necessary data.ptracer file. Simply use -enable=ptracers and uncomment line in data.pkg. PTRACER01 then reproduces Salt exactly. + This package is disabled by default since it increases storage.
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