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each ptracer uses its own background vertical diffusivity
Explicit vertical diffusivity: use a 2.D vertical diffusivity array
add myTime & myIter to argument list of GAD_CALC_RHS
replace surfaceTendencyPtr by surfaceForcingPtr
max number of passive tracers is now defined in PTRACERS_SIZE.h
T & S: separate Vert.Advec.Scheme from horizontal Advec.Scheme
rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) to work with implicit vertical advection and AB
cosmetic changes
o initialisation of rFlx extended to full array (required by TAF) and shifted to thermodynamics o removed PTRACERS.h in ptracers routine o added surfacetendencyPtr to S/R parameter list pracers_forcing
modifications so gchem pkg is more versatile
o Mods and bug fixes to pkg/cal, pkg/exf, etc. needed for computation of tracer Green's fucntions for ocean inversion project.
checkpoint51f_post o Added on-the-fly spatial interpolation capability "USE_EXF_INTERPOLATION" to pkg/exf. This is a temporary Cartesian-grid hack until the super-duper ESMF coupler becomes available. Usage example is in verification/global_with_exf. o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, and pkg/kpp/kpp_transport_ptr.F for dealing with tracer non-local transport term.
o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM o made ptracers_forcing same as external_forcing_s
files needed for biogeochemistry package (gchem)
Added include of PARAMS.h which fixes broken compile of pkg/ptracers due to the recently added flag "forcing_In_AB".
apply rescaling (NONLIN_FRSURF) also to gNm1 to get a better conservation
* tracer forcing inside or outside Adams-Bashforh ; * modified after gad_calc_rhs changes ;
Bug fix: missing indices for argument. Reported by Stephanie way back before Christmas!
Added PTRACERS package This allows an arbitrary number of passive tracers to be integrated forward simultaneously with the dynamicaly model. + Implemented so far: - basic forward algorithm (time-stepping, advection, diffusion, convection) - I/O and checkpointing - GM/Redi *but* using the GM/Redi coefficient of Salt + Not implemented so far: - KPP - OBCS + No specific example supplied (yet) but global_ocean.90x40x15 has the necessary data.ptracer file. Simply use -enable=ptracers and uncomment line in data.pkg. PTRACER01 then reproduces Salt exactly. + This package is disabled by default since it increases storage.
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