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o more comments for the api_reference (protex)
o new "poster children" for the API reference: - generic_advdiff - mnc
o in the MNC_CW_xxx_[R|W]_yyy calls, move the yyy=[R|D|I] part to a string variable within the argument list so that the output types are now run-time selectable o fix a bug in the initialization order -- ini_mnc_io() must be called after grid initialization
o finish implementation of the separate unlimited-dim handling for the MNC_CW_*_R_* and MNC_CW_*_W_* functions
o new default for the "grid" files: do not include the halos
o edit all MNC subroutines so that myThid is the _last_ argument
o small bug-fix on the bi,bj indicies o add some exch2 info to the global attributes
o add MNC functionality to: - write all the per-tile grid information - mimic the functionality already in WRITE_STATE()
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