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Merging changes on MAIN between checkpoint43 and checkpoint43a-release1mods Command: cvs -q update -jcheckpoint43 -jcheckpoint43a-release1mods -d -P These changes are most of the changes between c43 and c44 except those that occured after "12:45 11 Jan 2002". As far as I can tell it is checkpoint43 with the following mods: o fix bug in mom_vi_del2uv o select when filters are applied ; add options to zonal_filter (data.zonfilt) o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) o update AIM experiments (NCEP input files) o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) o added some stuff for AD o Jamar wet-points This update does not contain the following mods that are in checkpoint44 o bug fix in pkg/generic_advdiff/ - thread related bug, bi,bj arguments in vertical advection routines o some changes to pkg/autodiff, pkg/cost, pkg/exf, pkg/ecco, verification/carbon and model/src/ related to adjoint o some new Matlab scripts for diagnosing model density - utils/matlab/dens_poly3.m and ini_poly3.m The list of exclusions is accurate based on a "cvs diff". The list of inclusions is based on the record in doc/tag-index which may not be complete.
Made sure each .F and .h file had the CVS keywords Header and Name at its start. Most had header but very few currently have Name, so lots of changes!
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Corrected array dimensions. Temporary scalars introduced to avoid storing by TAMC.
Changes to comply with packaging structure.
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